Wall clock time and date at job start Tue Mar 31 2020 05:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46894 * 110.99947 * 2 1 4 4 C 1.52997 * 109.47515 * 66.04655 * 3 2 1 5 5 C 1.53000 * 109.47060 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.46886 * 180.02562 * 5 4 3 7 7 N 1.46902 * 109.46901 * 180.02562 * 6 5 4 8 8 C 1.46907 * 110.99665 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.46765 * 179.97438 * 8 7 6 10 10 C 1.53001 * 109.47312 * 299.99782 * 9 8 7 11 11 C 1.53007 * 109.47294 * 60.00374 * 9 8 7 12 12 C 1.53003 * 109.47071 * 179.97438 * 9 8 7 13 13 C 1.50699 * 109.47401 * 180.02562 * 12 9 8 14 14 H 1.08003 * 119.99570 * 0.02562 * 13 12 9 15 15 C 1.37880 * 120.00202 * 180.02562 * 13 12 9 16 16 N 1.31513 * 119.99939 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00174 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47159 * 89.99656 * 17 15 13 19 19 H 1.48494 * 109.47579 * 210.00102 * 17 15 13 20 20 H 1.48505 * 109.47119 * 330.00112 * 17 15 13 21 21 C 1.46898 * 110.99543 * 236.04312 * 2 1 3 22 22 C 1.52999 * 117.50237 * 7.70319 * 21 2 1 23 23 C 1.52998 * 117.50188 * 299.03911 * 21 2 1 24 24 H 1.08997 * 109.47044 * 59.99771 * 1 2 3 25 25 H 1.09001 * 109.47499 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47124 * 299.99969 * 1 2 3 27 27 H 1.09002 * 109.47104 * 306.04387 * 3 2 1 28 28 H 1.08998 * 109.46828 * 186.05219 * 3 2 1 29 29 H 1.09002 * 109.47153 * 59.99762 * 4 3 2 30 30 H 1.09001 * 109.46832 * 299.99953 * 4 3 2 31 31 H 1.09001 * 109.47194 * 299.99650 * 5 4 3 32 32 H 1.08992 * 109.47399 * 59.99823 * 5 4 3 33 33 H 1.09001 * 109.47109 * 299.99380 * 6 5 4 34 34 H 1.09002 * 109.47508 * 59.99571 * 6 5 4 35 35 H 1.00898 * 111.00229 * 56.04458 * 7 6 5 36 36 H 1.08995 * 109.46981 * 299.99659 * 8 7 6 37 37 H 1.08993 * 109.47289 * 60.00009 * 8 7 6 38 38 H 1.09002 * 109.47029 * 60.00405 * 10 9 8 39 39 H 1.09000 * 109.47152 * 180.02562 * 10 9 8 40 40 H 1.08994 * 109.46831 * 300.00107 * 10 9 8 41 41 H 1.08995 * 109.47463 * 59.99444 * 11 9 8 42 42 H 1.09000 * 109.47228 * 179.97438 * 11 9 8 43 43 H 1.08999 * 109.46431 * 299.99522 * 11 9 8 44 44 H 1.09005 * 109.47127 * 300.00342 * 12 9 8 45 45 H 1.09004 * 109.47149 * 59.99839 * 12 9 8 46 46 H 0.96999 * 120.00341 * 180.02562 * 16 15 13 47 47 H 1.09004 * 115.54525 * 153.37466 * 21 2 1 48 48 H 1.08995 * 117.49846 * 0.02562 * 22 21 2 49 49 H 1.08999 * 117.49509 * 145.02121 * 22 21 2 50 50 H 1.09001 * 117.50084 * 214.98372 * 23 21 2 51 51 H 1.09000 * 117.49562 * 359.97438 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0575 1.3182 5 6 2.1793 3.4860 1.3178 6 6 1.8159 4.1719 2.6363 7 7 2.3413 5.5437 2.6357 8 6 2.0101 6.2348 3.8891 9 6 2.5731 7.6569 3.8514 10 6 4.0932 7.5995 3.6870 11 6 1.9610 8.4168 2.6729 12 6 2.2277 8.3769 5.1565 13 6 2.7817 9.7779 5.1192 14 1 3.3254 10.1206 4.2512 15 6 2.5945 10.6221 6.1931 16 7 1.9328 10.2046 7.2502 17 14 3.2818 12.3585 6.1471 18 1 2.2692 13.2765 5.5665 19 1 3.6136 12.7962 7.5268 20 1 4.5091 12.3830 5.3114 21 6 1.9953 -0.7660 -1.1376 22 6 0.9929 -1.2528 -2.1860 23 6 1.6335 -2.2505 -1.2177 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.5611 1.9273 -0.8309 28 1 3.0797 1.3443 -0.1084 29 1 2.0658 1.5016 2.1492 30 1 0.5472 2.0845 1.4264 31 1 3.2636 3.4594 1.2094 32 1 1.7446 4.0416 0.4870 33 1 0.7316 4.1986 2.7452 34 1 2.2509 3.6161 3.4670 35 1 2.0026 6.0603 1.8379 36 1 0.9272 6.2754 4.0064 37 1 2.4465 5.6938 4.7286 38 1 4.3389 7.0867 2.7570 39 1 4.4944 8.6126 3.6606 40 1 4.5292 7.0582 4.5266 41 1 0.8781 8.4577 2.7900 42 1 2.3617 9.4301 2.6463 43 1 2.2067 7.9040 1.7430 44 1 1.1447 8.4178 5.2732 45 1 2.6634 7.8357 5.9964 46 1 1.8007 10.7987 8.0056 47 1 2.9846 -0.4696 -1.4865 48 1 -0.0571 -1.0042 -2.0319 49 1 1.3228 -1.2769 -3.2246 50 1 2.3844 -2.9306 -1.6197 51 1 1.0052 -2.6587 -0.4261 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453597000.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:05 Heat of formation + Delta-G solvation = 4.158124 kcal Electronic energy + Delta-G solvation = -21986.890417 eV Core-core repulsion = 18921.069706 eV Total energy + Delta-G solvation = -3065.820711 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.33146 -37.77954 -36.04474 -34.38811 -32.53780 -31.52296 -28.16832 -26.99064 -26.42157 -26.28148 -24.66548 -22.85081 -22.61411 -21.70979 -21.04837 -20.35509 -17.82057 -17.06137 -16.24103 -16.12541 -15.76920 -14.99992 -14.84109 -14.49083 -14.30730 -13.93049 -13.74425 -13.21492 -12.96604 -12.72959 -12.57748 -12.32900 -12.11412 -11.98109 -11.91278 -11.74772 -11.49896 -11.42409 -11.22993 -10.98250 -10.92741 -10.85333 -10.75790 -10.62439 -10.58298 -10.45324 -10.21922 -10.07865 -9.65054 -8.98443 -8.79927 -8.51763 -8.29633 -8.03865 -5.94102 -3.94133 3.24316 3.34601 3.41183 3.44269 3.62901 4.38713 4.45070 4.52172 4.54572 4.61013 4.72956 4.80552 4.95057 5.10550 5.19728 5.24194 5.25538 5.39482 5.41481 5.43093 5.43737 5.57861 5.62189 5.67243 5.71587 5.73683 5.76670 5.84336 5.90833 6.01985 6.19756 6.22755 6.30809 6.37952 6.54641 6.65291 6.69744 6.72698 6.82416 6.85951 7.23912 7.26974 7.29660 7.45224 7.71216 7.75132 7.88812 8.06368 8.50978 9.11266 9.68449 11.17555 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.058096 B = 0.002019 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.842282 B =13866.870194 C =14004.883305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.511 5.511 3 C 0.057 3.943 4 C -0.115 4.115 5 C -0.115 4.115 6 C 0.059 3.941 7 N -0.688 5.688 8 C 0.070 3.930 9 C -0.059 4.059 10 C -0.116 4.116 11 C -0.129 4.129 12 C 0.033 3.967 13 C -0.506 4.506 14 H 0.059 0.941 15 C 0.053 3.947 16 N -0.898 5.898 17 Si 0.888 3.112 18 H -0.282 1.282 19 H -0.288 1.288 20 H -0.274 1.274 21 C 0.021 3.979 22 C -0.221 4.221 23 C -0.171 4.171 24 H 0.031 0.969 25 H 0.067 0.933 26 H 0.074 0.926 27 H 0.035 0.965 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.022 0.978 34 H 0.069 0.931 35 H 0.336 0.664 36 H 0.022 0.978 37 H 0.065 0.935 38 H 0.042 0.958 39 H 0.054 0.946 40 H 0.039 0.961 41 H 0.039 0.961 42 H 0.064 0.936 43 H 0.033 0.967 44 H 0.012 0.988 45 H 0.015 0.985 46 H 0.258 0.742 47 H 0.118 0.882 48 H 0.099 0.901 49 H 0.093 0.907 50 H 0.097 0.903 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.083 -21.363 -17.135 27.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.232 5.232 3 C -0.070 4.070 4 C -0.153 4.153 5 C -0.153 4.153 6 C -0.071 4.071 7 N -0.320 5.320 8 C -0.059 4.059 9 C -0.060 4.060 10 C -0.173 4.173 11 C -0.186 4.186 12 C -0.004 4.004 13 C -0.545 4.545 14 H 0.077 0.923 15 C -0.147 4.147 16 N -0.538 5.538 17 Si 0.716 3.284 18 H -0.209 1.209 19 H -0.214 1.214 20 H -0.199 1.199 21 C -0.089 4.089 22 C -0.260 4.260 23 C -0.209 4.209 24 H 0.049 0.951 25 H 0.086 0.914 26 H 0.092 0.908 27 H 0.053 0.947 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.041 0.959 34 H 0.087 0.913 35 H 0.155 0.845 36 H 0.040 0.960 37 H 0.084 0.916 38 H 0.061 0.939 39 H 0.073 0.927 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.083 0.917 43 H 0.052 0.948 44 H 0.030 0.970 45 H 0.033 0.967 46 H 0.068 0.932 47 H 0.135 0.865 48 H 0.117 0.883 49 H 0.111 0.889 50 H 0.115 0.885 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.352 -21.707 -16.290 27.173 hybrid contribution -1.024 1.488 -0.706 1.940 sum -2.376 -20.218 -16.996 26.520 Atomic orbital electron populations 1.22549 0.87493 1.01965 1.01127 1.61858 1.07843 1.13952 1.39591 1.22182 1.00262 0.87113 0.97438 1.21565 1.01030 0.95355 0.97356 1.21511 1.01888 0.94456 0.97458 1.21921 0.96710 0.90763 0.97690 1.60578 1.63579 1.02267 1.05550 1.22098 0.97208 0.95574 0.90978 1.20637 0.95440 0.91703 0.98192 1.21594 0.95140 1.00904 0.99666 1.21769 0.99626 1.01021 0.96198 1.19127 0.96417 0.94635 0.90232 1.21247 1.34211 0.97423 1.01584 0.92290 1.25027 0.95590 0.98370 0.95705 1.69967 1.41691 1.36003 1.06094 0.86655 0.79371 0.85200 0.77131 1.20859 1.21384 1.19921 1.22692 0.98415 0.95482 0.92303 1.23570 0.99808 1.06125 0.96510 1.23059 1.03690 0.92344 1.01816 0.95079 0.91432 0.90754 0.94655 0.90526 0.90921 0.92104 0.90996 0.92434 0.95943 0.91260 0.84484 0.95997 0.91637 0.93885 0.92726 0.94194 0.94160 0.91734 0.94808 0.96960 0.96672 0.93191 0.86464 0.88276 0.88890 0.88499 0.88573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 7.95 60.07 0.48 0.60 16 2 N -0.51 -4.32 4.97 -234.89 -1.17 -5.49 16 3 C 0.06 0.48 4.93 -3.83 -0.02 0.46 16 4 C -0.11 -1.01 5.14 -26.73 -0.14 -1.15 16 5 C -0.11 -1.14 5.47 -26.73 -0.15 -1.28 16 6 C 0.06 0.72 5.69 -3.82 -0.02 0.70 16 7 N -0.69 -10.13 5.71 -113.78 -0.65 -10.78 16 8 C 0.07 1.24 4.65 -3.82 -0.02 1.22 16 9 C -0.06 -1.20 0.60 -154.50 -0.09 -1.30 16 10 C -0.12 -2.29 8.07 37.16 0.30 -1.99 16 11 C -0.13 -2.42 7.89 37.16 0.29 -2.13 16 12 C 0.03 0.85 4.04 -27.88 -0.11 0.74 16 13 C -0.51 -13.98 7.65 -34.44 -0.26 -14.25 16 14 H 0.06 1.58 5.68 -52.48 -0.30 1.29 16 15 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 16 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 17 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 21 C 0.02 0.15 6.11 -67.71 -0.41 -0.26 16 22 C -0.22 -1.43 9.51 -26.69 -0.25 -1.69 16 23 C -0.17 -1.13 9.99 -26.69 -0.27 -1.39 16 24 H 0.03 0.22 7.23 -51.93 -0.38 -0.15 16 25 H 0.07 0.46 6.63 -51.93 -0.34 0.12 16 26 H 0.07 0.55 6.47 -51.93 -0.34 0.22 16 27 H 0.04 0.29 8.12 -51.93 -0.42 -0.13 16 28 H 0.08 0.62 7.96 -51.93 -0.41 0.21 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.53 6.55 -51.93 -0.34 0.19 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.34 4.74 6.77 -39.29 -0.27 4.47 16 36 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.04 0.76 7.60 -51.93 -0.39 0.37 16 39 H 0.05 1.15 6.62 -51.93 -0.34 0.80 16 40 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.06 1.31 6.61 -51.93 -0.34 0.97 16 43 H 0.03 0.54 6.57 -51.93 -0.34 0.19 16 44 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 47 H 0.12 0.80 7.93 -51.93 -0.41 0.39 16 48 H 0.10 0.64 5.90 -51.93 -0.31 0.34 16 49 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 50 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 51 H 0.10 0.66 7.56 -51.93 -0.39 0.27 16 LS Contribution 386.34 15.07 5.82 5.82 Total: -1.00 -29.33 386.34 -11.01 -40.34 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -9.96 Total: -0.03 kcal Atomic # 6 Polarization: -19.50 SS G_CDS: -0.77 Total: -20.27 kcal Atomic # 7 Polarization: -41.50 SS G_CDS: -1.08 Total: -42.58 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -29.33 -11.01 -40.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453597000.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.497 kcal (2) G-P(sol) polarization free energy of solvation -29.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds