Wall clock time and date at job start Tue Mar 31 2020 05:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 109.46880 * 2 1 4 4 C 1.53000 * 109.46840 * 240.00135 * 2 1 3 5 5 N 1.46892 * 109.47037 * 120.00317 * 2 1 3 6 6 C 1.46843 * 111.00589 * 59.99846 * 5 2 1 7 7 C 1.53039 * 109.52681 * 185.83751 * 6 5 2 8 8 C 1.53118 * 109.27624 * 300.82289 * 7 6 5 9 9 N 1.46909 * 109.51899 * 177.55798 * 8 7 6 10 10 C 1.46903 * 110.99755 * 154.99921 * 9 8 7 11 11 C 1.52996 * 109.46985 * 179.97438 * 10 9 8 12 12 C 1.52996 * 109.47142 * 300.00381 * 11 10 9 13 13 C 1.53008 * 109.47150 * 59.99885 * 11 10 9 14 14 C 1.50697 * 109.47172 * 180.02562 * 11 10 9 15 15 H 1.07996 * 120.00096 * 357.60820 * 14 11 10 16 16 C 1.37876 * 119.99906 * 177.61100 * 14 11 10 17 17 N 1.31518 * 120.00294 * 6.34572 * 16 14 11 18 18 Si 1.86800 * 119.99899 * 186.34612 * 16 14 11 19 19 H 1.48503 * 109.46892 * 84.97318 * 18 16 14 20 20 H 1.48505 * 109.47400 * 204.97331 * 18 16 14 21 21 H 1.48497 * 109.47212 * 324.97633 * 18 16 14 22 22 C 1.53122 * 109.16283 * 57.65505 * 8 7 6 23 23 C 1.46850 * 110.99985 * 184.21366 * 5 2 1 24 24 H 1.08991 * 109.47003 * 299.99589 * 1 2 3 25 25 H 1.09000 * 109.47270 * 60.00029 * 1 2 3 26 26 H 1.09004 * 109.47027 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46753 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47145 * 300.00048 * 3 2 1 29 29 H 1.09003 * 109.46887 * 59.99991 * 3 2 1 30 30 H 1.08990 * 109.47411 * 299.99596 * 4 2 1 31 31 H 1.09000 * 109.47541 * 60.00374 * 4 2 1 32 32 H 1.09008 * 109.46568 * 179.97438 * 4 2 1 33 33 H 1.09001 * 109.45861 * 65.82329 * 6 5 2 34 34 H 1.08995 * 109.46354 * 305.85869 * 6 5 2 35 35 H 1.08997 * 109.49984 * 60.76669 * 7 6 5 36 36 H 1.09003 * 109.50299 * 180.88556 * 7 6 5 37 37 H 1.08999 * 109.52372 * 297.74399 * 8 7 6 38 38 H 1.00890 * 110.99710 * 278.95604 * 9 8 7 39 39 H 1.08996 * 109.47247 * 300.00213 * 10 9 8 40 40 H 1.09000 * 109.46739 * 60.00221 * 10 9 8 41 41 H 1.08999 * 109.47532 * 65.11057 * 12 11 10 42 42 H 1.09007 * 109.47358 * 185.10610 * 12 11 10 43 43 H 1.09003 * 109.47455 * 305.10266 * 12 11 10 44 44 H 1.09006 * 109.46817 * 60.00058 * 13 11 10 45 45 H 1.08996 * 109.47220 * 179.97438 * 13 11 10 46 46 H 1.08997 * 109.47451 * 300.00427 * 13 11 10 47 47 H 0.96996 * 120.00062 * 179.97438 * 17 16 14 48 48 H 1.08998 * 109.49927 * 182.40201 * 22 8 7 49 49 H 1.08997 * 109.49895 * 62.28473 * 22 8 7 50 50 H 1.09000 * 109.46095 * 294.17624 * 23 5 2 51 51 H 1.09004 * 109.46445 * 54.13970 * 23 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0197 -0.6925 1.1993 6 6 1.5489 -2.0830 1.2333 7 6 1.9541 -2.7280 2.5607 8 6 3.4782 -2.6819 2.7007 9 7 3.8691 -3.2469 3.9992 10 6 5.2426 -3.7663 3.9552 11 6 5.6132 -4.3444 5.3224 12 6 5.5168 -3.2465 6.3835 13 6 4.6496 -5.4797 5.6742 14 6 7.0223 -4.8767 5.2775 15 1 7.5826 -4.8445 4.3548 16 6 7.5962 -5.4049 6.4144 17 7 6.8759 -5.5594 7.5038 18 14 9.3971 -5.9010 6.4074 19 1 10.2387 -4.7143 6.7052 20 1 9.6276 -6.9430 7.4401 21 1 9.7569 -6.4402 5.0713 22 6 3.9471 -1.2269 2.6136 23 6 3.4842 -0.6255 1.2847 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6768 -1.7488 -1.2493 31 1 1.6767 -0.2074 -2.1393 32 1 3.1301 -0.7208 -1.2495 33 1 1.9959 -2.6380 0.4085 34 1 0.4634 -2.1014 1.1370 35 1 1.4962 -2.1818 3.3854 36 1 1.6181 -3.7648 2.5791 37 1 3.9353 -3.2607 1.8981 38 1 3.7634 -2.5661 4.7362 39 1 5.3113 -4.5481 3.1989 40 1 5.9290 -2.9574 3.7050 41 1 4.4800 -2.9244 6.4800 42 1 5.8673 -3.6340 7.3402 43 1 6.1345 -2.3989 6.0866 44 1 4.7182 -6.2619 4.9182 45 1 4.9138 -5.8919 6.6480 46 1 3.6305 -5.0943 5.7068 47 1 7.2796 -5.9313 8.3035 48 1 5.0351 -1.1913 2.6698 49 1 3.5206 -0.6571 3.4391 50 1 3.9221 -1.1873 0.4597 51 1 3.8042 0.4148 1.2258 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459684082.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:52 Heat of formation + Delta-G solvation = -10.571996 kcal Electronic energy + Delta-G solvation = -23846.501969 eV Core-core repulsion = 20780.042512 eV Total energy + Delta-G solvation = -3066.459457 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.96899 -37.33849 -35.49621 -32.95984 -31.05954 -30.99409 -28.66415 -27.55864 -27.46667 -25.52261 -25.19461 -24.30684 -22.65986 -22.35544 -20.03640 -18.93953 -18.30709 -16.51826 -15.82806 -15.14743 -14.94846 -14.61144 -14.52523 -14.27269 -14.13654 -13.77820 -13.48976 -13.17099 -12.82776 -12.64470 -12.45696 -12.10341 -12.01230 -11.95660 -11.75897 -11.71718 -11.29027 -11.21484 -11.11882 -11.05893 -10.86108 -10.80912 -10.62035 -10.56259 -10.31672 -10.19097 -10.11350 -9.96859 -9.35106 -8.98446 -8.60825 -8.29324 -8.24360 -7.57353 -5.88839 -3.98719 3.32919 3.39533 3.42098 3.76122 4.45432 4.57502 4.66341 4.80032 4.88950 4.99337 5.04766 5.24929 5.31935 5.35767 5.36002 5.37891 5.49564 5.55702 5.57599 5.62323 5.67058 5.68248 5.79511 5.83907 5.86387 5.94089 6.05332 6.11002 6.14037 6.22965 6.36261 6.40077 6.50991 6.55590 6.77483 6.92174 7.11306 7.12236 7.13801 7.20835 7.43846 7.53594 7.78904 7.80373 7.88875 8.06516 8.24900 8.40325 8.60108 9.02795 9.65804 11.11369 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.036010 B = 0.003243 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.375975 B = 8630.633177 C = 8889.700578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.100 3.900 3 C -0.141 4.141 4 C -0.181 4.181 5 N -0.524 5.524 6 C 0.052 3.948 7 C -0.102 4.102 8 C 0.087 3.913 9 N -0.681 5.681 10 C 0.077 3.923 11 C 0.069 3.931 12 C -0.132 4.132 13 C -0.119 4.119 14 C -0.507 4.507 15 H 0.051 0.949 16 C 0.065 3.935 17 N -0.883 5.883 18 Si 0.887 3.113 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.276 1.276 22 C -0.145 4.145 23 C 0.056 3.944 24 H 0.063 0.937 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.032 0.968 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.338 0.662 39 H 0.053 0.947 40 H 0.012 0.988 41 H 0.013 0.987 42 H 0.081 0.919 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.075 0.925 46 H 0.019 0.981 47 H 0.258 0.742 48 H 0.064 0.936 49 H 0.069 0.931 50 H 0.032 0.968 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.469 11.292 -14.145 21.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.011 3.989 3 C -0.199 4.199 4 C -0.240 4.240 5 N -0.249 5.249 6 C -0.076 4.076 7 C -0.140 4.140 8 C -0.024 4.024 9 N -0.311 5.311 10 C -0.052 4.052 11 C 0.068 3.932 12 C -0.190 4.190 13 C -0.177 4.177 14 C -0.546 4.546 15 H 0.069 0.931 16 C -0.136 4.136 17 N -0.522 5.522 18 Si 0.715 3.285 19 H -0.208 1.208 20 H -0.214 1.214 21 H -0.202 1.202 22 C -0.184 4.184 23 C -0.072 4.072 24 H 0.082 0.918 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.050 0.950 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.157 0.843 39 H 0.071 0.929 40 H 0.030 0.970 41 H 0.032 0.968 42 H 0.100 0.900 43 H 0.036 0.964 44 H 0.036 0.964 45 H 0.094 0.906 46 H 0.038 0.962 47 H 0.068 0.932 48 H 0.083 0.917 49 H 0.088 0.912 50 H 0.050 0.950 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.918 10.825 -13.647 21.106 hybrid contribution 2.020 0.138 -0.788 2.173 sum -9.898 10.963 -14.436 20.653 Atomic orbital electron populations 1.21889 0.93808 1.02024 1.01915 1.21055 0.95391 0.94258 0.88218 1.21927 1.01123 0.94831 1.01977 1.22500 1.01600 1.01184 0.98737 1.62181 1.10294 1.15081 1.37361 1.22197 1.00078 0.87803 0.97530 1.21551 0.95682 1.00399 0.96395 1.21584 0.95141 0.92230 0.93448 1.60676 1.26623 1.40067 1.03712 1.22155 0.85487 0.96711 1.00805 1.18084 0.94276 0.92290 0.88528 1.21806 0.96145 0.97391 1.03642 1.21664 0.95888 0.98019 1.02096 1.21115 0.98164 1.39565 0.95732 0.93081 1.24881 0.97400 0.95494 0.95775 1.69849 1.34906 1.45203 1.02258 0.86703 0.86029 0.78136 0.77628 1.20791 1.21368 1.20151 1.22343 1.00585 0.97992 0.97523 1.22107 0.87380 1.00642 0.97087 0.91769 0.92518 0.92446 0.92433 0.92467 0.91756 0.92302 0.92306 0.92468 0.94950 0.90636 0.91338 0.91104 0.91608 0.84311 0.92889 0.97011 0.96792 0.90042 0.96438 0.96446 0.90600 0.96182 0.93198 0.91712 0.91188 0.94988 0.90755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 8.25 37.16 0.31 -0.83 16 2 C 0.10 0.92 0.71 -131.60 -0.09 0.83 16 3 C -0.14 -1.19 8.12 37.16 0.30 -0.89 16 4 C -0.18 -1.59 7.79 37.16 0.29 -1.30 16 5 N -0.52 -5.76 4.47 -219.02 -0.98 -6.74 16 6 C 0.05 0.58 4.64 -3.84 -0.02 0.56 16 7 C -0.10 -1.34 5.70 -26.65 -0.15 -1.49 16 8 C 0.09 1.29 2.53 -67.58 -0.17 1.12 16 9 N -0.68 -12.22 5.47 -106.59 -0.58 -12.80 16 10 C 0.08 1.62 4.39 -3.82 -0.02 1.60 16 11 C 0.07 1.68 0.57 -155.66 -0.09 1.59 16 12 C -0.13 -3.15 7.82 37.16 0.29 -2.86 16 13 C -0.12 -2.95 8.12 37.16 0.30 -2.65 16 14 C -0.51 -13.81 8.01 -34.44 -0.28 -14.08 16 15 H 0.05 1.39 7.75 -52.49 -0.41 0.99 16 16 C 0.07 1.79 5.10 -17.82 -0.09 1.70 16 17 N -0.88 -24.70 9.38 55.43 0.52 -24.18 16 18 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 C -0.14 -1.96 5.35 -26.65 -0.14 -2.10 16 23 C 0.06 0.65 4.67 -3.83 -0.02 0.63 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.47 6.28 -51.93 -0.33 0.15 16 27 H 0.06 0.49 6.22 -51.93 -0.32 0.17 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.54 6.54 -51.93 -0.34 0.20 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.54 6.63 -51.92 -0.34 0.19 16 33 H 0.03 0.37 6.63 -51.93 -0.34 0.03 16 34 H 0.08 0.77 6.01 -51.93 -0.31 0.46 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.07 1.04 7.80 -51.93 -0.41 0.64 16 38 H 0.34 6.09 6.60 -39.30 -0.26 5.83 16 39 H 0.05 1.16 8.06 -51.93 -0.42 0.74 16 40 H 0.01 0.25 7.51 -51.93 -0.39 -0.14 16 41 H 0.01 0.29 6.84 -51.93 -0.36 -0.07 16 42 H 0.08 2.16 6.01 -51.93 -0.31 1.85 16 43 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.08 2.06 6.03 -51.93 -0.31 1.74 16 46 H 0.02 0.45 7.60 -51.93 -0.39 0.06 16 47 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 48 H 0.06 0.93 7.54 -51.93 -0.39 0.54 16 49 H 0.07 0.98 8.10 -51.93 -0.42 0.56 16 50 H 0.03 0.38 6.71 -51.93 -0.35 0.03 16 51 H 0.07 0.81 5.90 -51.93 -0.31 0.50 16 LS Contribution 364.29 15.07 5.49 5.49 Total: -1.00 -27.00 364.29 -9.80 -36.80 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -9.65 Total: 3.34 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: 0.42 Total: -18.16 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: -1.04 Total: -43.72 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -27.00 -9.80 -36.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459684082.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.228 kcal (2) G-P(sol) polarization free energy of solvation -26.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds