Wall clock time and date at job start Tue Mar 31 2020 05:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46847 * 111.00238 * 2 1 4 4 C 1.53032 * 109.52355 * 185.83504 * 3 2 1 5 5 C 1.53116 * 109.28129 * 300.82582 * 4 3 2 6 6 C 1.53112 * 109.16332 * 57.65506 * 5 4 3 7 7 H 1.09002 * 109.50756 * 62.32641 * 6 5 4 8 8 C 1.52994 * 109.50626 * 182.40644 * 6 5 4 9 9 C 1.52999 * 109.47696 * 184.99870 * 8 6 5 10 10 N 1.46890 * 109.47676 * 179.97438 * 9 8 6 11 11 C 1.46901 * 111.00688 * 179.97438 * 10 9 8 12 12 C 1.52992 * 109.47859 * 180.02562 * 11 10 9 13 13 C 1.53006 * 109.47223 * 59.99693 * 12 11 10 14 14 C 1.52999 * 109.46961 * 300.00342 * 12 11 10 15 15 C 1.52997 * 109.47482 * 179.97438 * 12 11 10 16 16 C 1.50701 * 109.47212 * 179.97438 * 15 12 11 17 17 H 1.07998 * 120.00129 * 0.02562 * 16 15 12 18 18 C 1.37880 * 119.99861 * 179.97438 * 16 15 12 19 19 N 1.31510 * 119.99913 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99734 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47432 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.46890 * 120.00210 * 20 18 16 23 23 H 1.48501 * 109.47062 * 240.00257 * 20 18 16 24 24 C 1.46849 * 110.99759 * 124.21551 * 2 1 3 25 25 H 1.09006 * 109.46957 * 63.95423 * 1 2 3 26 26 H 1.09002 * 109.47171 * 183.94848 * 1 2 3 27 27 H 1.08991 * 109.47412 * 303.95486 * 1 2 3 28 28 H 1.09000 * 109.45651 * 65.82194 * 3 2 1 29 29 H 1.08992 * 109.45238 * 305.85523 * 3 2 1 30 30 H 1.09003 * 109.50235 * 180.87553 * 4 3 2 31 31 H 1.08999 * 109.53318 * 60.78873 * 4 3 2 32 32 H 1.09002 * 109.52036 * 297.74488 * 5 4 3 33 33 H 1.09003 * 109.52142 * 177.56051 * 5 4 3 34 34 H 1.09005 * 109.47264 * 64.99487 * 8 6 5 35 35 H 1.09002 * 109.47187 * 304.99828 * 8 6 5 36 36 H 1.09005 * 109.47077 * 59.99503 * 9 8 6 37 37 H 1.09002 * 109.46769 * 300.00214 * 9 8 6 38 38 H 1.00905 * 111.00280 * 303.95982 * 10 9 8 39 39 H 1.09002 * 109.46980 * 59.99769 * 11 10 9 40 40 H 1.09001 * 109.46628 * 300.00190 * 11 10 9 41 41 H 1.08993 * 109.46955 * 180.02562 * 13 12 11 42 42 H 1.09000 * 109.47050 * 300.00346 * 13 12 11 43 43 H 1.09001 * 109.47002 * 60.00080 * 13 12 11 44 44 H 1.09002 * 109.46716 * 299.99630 * 14 12 11 45 45 H 1.09000 * 109.47486 * 59.99547 * 14 12 11 46 46 H 1.09001 * 109.47362 * 180.02562 * 14 12 11 47 47 H 1.09002 * 109.47153 * 59.99783 * 15 12 11 48 48 H 1.09001 * 109.46832 * 299.99974 * 15 12 11 49 49 H 0.97002 * 119.99768 * 179.97438 * 19 18 16 50 50 H 1.09003 * 109.46565 * 54.14085 * 24 2 1 51 51 H 1.09005 * 109.45890 * 294.17588 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3341 -0.1466 5 6 4.1188 0.5368 1.0144 6 6 3.5182 -0.8716 1.0208 7 1 3.7820 -1.3840 0.0956 8 6 4.0679 -1.6560 2.2138 9 6 3.5657 -3.0998 2.1501 10 7 4.0941 -3.8531 3.2951 11 6 3.6310 -5.2469 3.2674 12 6 4.2000 -5.9976 4.4729 13 6 3.7228 -5.3273 5.7629 14 6 5.7287 -5.9669 4.4177 15 6 3.7172 -7.4491 4.4443 16 6 4.2782 -8.1887 5.6315 17 1 4.9151 -7.6747 6.3362 18 6 3.9776 -9.5212 5.8185 19 7 3.2017 -10.1470 4.9607 20 14 4.6724 -10.4377 7.2905 21 1 5.5092 -9.5146 8.0985 22 1 3.5569 -10.9523 8.1248 23 1 5.5030 -11.5747 6.8186 24 6 1.9952 -0.7709 1.1337 25 1 -0.3633 0.4513 -0.9234 26 1 -0.3633 -1.0252 0.0708 27 1 -0.3634 0.5739 0.8523 28 1 1.7325 1.8607 0.9376 29 1 1.5634 1.9255 -0.8330 30 1 3.9100 2.3512 -0.1310 31 1 3.7820 0.8571 -1.0906 32 1 3.8887 1.0353 1.9561 33 1 5.1998 0.4713 0.8906 34 1 3.7280 -1.1936 3.1405 35 1 5.1575 -1.6487 2.1824 36 1 3.9056 -3.5622 1.2234 37 1 2.4761 -3.1071 2.1815 38 1 5.1016 -3.8069 3.3245 39 1 3.9706 -5.7244 2.3482 40 1 2.5419 -5.2688 3.3072 41 1 4.1285 -5.8618 6.6217 42 1 4.0664 -4.2931 5.7835 43 1 2.6337 -5.3491 5.8023 44 1 6.0687 -6.4444 3.4988 45 1 6.0723 -4.9326 4.4384 46 1 6.1342 -6.5021 5.2764 47 1 4.0568 -7.9270 3.5254 48 1 2.6281 -7.4706 4.4839 49 1 2.9904 -11.0845 5.0921 50 1 1.5633 -1.7717 1.1242 51 1 1.7324 -0.2710 2.0660 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459737612.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:12 Heat of formation + Delta-G solvation = -33.723109 kcal Electronic energy + Delta-G solvation = -22770.200573 eV Core-core repulsion = 19702.737209 eV Total energy + Delta-G solvation = -3067.463364 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.50657 -37.66906 -35.48414 -33.77122 -32.48543 -31.65043 -28.17685 -27.04772 -26.80111 -26.29431 -25.01438 -23.60355 -22.80608 -21.87686 -20.98293 -19.90170 -17.79517 -16.23454 -16.12663 -15.90696 -15.25556 -14.86185 -14.80351 -14.57625 -14.19950 -13.99647 -13.58827 -13.46151 -13.10930 -12.80543 -12.65247 -12.44889 -12.25055 -12.05730 -11.94382 -11.91248 -11.50458 -11.31674 -11.13814 -10.95136 -10.85057 -10.75258 -10.69384 -10.53547 -10.47586 -10.29984 -10.21815 -10.05132 -9.64855 -8.98107 -8.78694 -8.59516 -8.29968 -8.02612 -5.94271 -3.94146 3.33698 3.41462 3.45085 3.65458 4.31906 4.50240 4.54275 4.60270 4.72938 4.82850 5.06783 5.13688 5.15836 5.25170 5.29822 5.31898 5.38794 5.41623 5.51538 5.55282 5.60284 5.65088 5.72277 5.74733 5.77833 5.81534 5.86807 5.91096 6.01186 6.04809 6.18465 6.27856 6.33227 6.38614 6.55117 6.69780 6.80176 6.82694 6.83119 6.86140 7.24303 7.27409 7.29576 7.46059 7.71885 7.75826 7.89010 8.06458 8.51079 9.11569 9.68548 11.17504 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.036712 B = 0.002563 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.504015 B =10922.001005 C =11340.091002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.545 5.545 3 C 0.055 3.945 4 C -0.117 4.117 5 C -0.116 4.116 6 C -0.082 4.082 7 H 0.077 0.923 8 C -0.111 4.111 9 C 0.057 3.943 10 N -0.688 5.688 11 C 0.070 3.930 12 C -0.058 4.058 13 C -0.115 4.115 14 C -0.129 4.129 15 C 0.033 3.967 16 C -0.505 4.505 17 H 0.059 0.941 18 C 0.053 3.947 19 N -0.898 5.898 20 Si 0.887 3.113 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.286 1.286 24 C 0.059 3.941 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.024 0.976 28 H 0.031 0.969 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.024 0.976 37 H 0.068 0.932 38 H 0.337 0.663 39 H 0.022 0.978 40 H 0.064 0.936 41 H 0.054 0.946 42 H 0.042 0.958 43 H 0.038 0.962 44 H 0.039 0.961 45 H 0.033 0.967 46 H 0.064 0.936 47 H 0.012 0.988 48 H 0.015 0.985 49 H 0.258 0.742 50 H 0.078 0.922 51 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.808 23.019 -9.886 25.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.269 5.269 3 C -0.073 4.073 4 C -0.155 4.155 5 C -0.154 4.154 6 C -0.102 4.102 7 H 0.096 0.904 8 C -0.149 4.149 9 C -0.073 4.073 10 N -0.320 5.320 11 C -0.058 4.058 12 C -0.059 4.059 13 C -0.173 4.173 14 C -0.186 4.186 15 C -0.005 4.005 16 C -0.543 4.543 17 H 0.078 0.922 18 C -0.147 4.147 19 N -0.538 5.538 20 Si 0.716 3.284 21 H -0.198 1.198 22 H -0.212 1.212 23 H -0.212 1.212 24 C -0.069 4.069 25 H 0.085 0.915 26 H 0.088 0.912 27 H 0.043 0.957 28 H 0.049 0.951 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.042 0.958 37 H 0.087 0.913 38 H 0.156 0.844 39 H 0.040 0.960 40 H 0.083 0.917 41 H 0.073 0.927 42 H 0.061 0.939 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.052 0.948 46 H 0.083 0.917 47 H 0.031 0.969 48 H 0.033 0.967 49 H 0.068 0.932 50 H 0.097 0.903 51 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -1.239 22.832 -9.923 24.926 hybrid contribution 0.462 -0.692 0.737 1.112 sum -0.776 22.140 -9.186 23.983 Atomic orbital electron populations 1.22355 0.87280 1.02117 1.00619 1.61913 1.07539 1.13618 1.43865 1.22092 0.95753 0.89260 1.00202 1.21583 0.94358 1.00045 0.99520 1.21632 0.99996 0.95399 0.98350 1.21164 0.94037 0.95723 0.99237 0.90415 1.21583 1.00393 0.94945 0.97976 1.21986 1.00191 0.93131 0.91945 1.60566 1.15172 1.13718 1.42551 1.22092 0.99807 0.86286 0.97652 1.20622 0.94535 0.97550 0.93167 1.21594 0.99837 0.98420 0.97429 1.21768 0.96248 0.98717 1.01884 1.19135 0.96226 0.88126 0.96997 1.21281 1.29347 0.94684 1.09019 0.92243 1.25025 0.95452 0.97879 0.96337 1.69979 1.37178 1.10481 1.36153 0.86608 0.78842 0.79898 0.83089 1.19777 1.21171 1.21203 1.22229 0.95306 0.98292 0.91040 0.91460 0.91222 0.95742 0.95067 0.91024 0.91645 0.91114 0.92211 0.91691 0.91211 0.91927 0.95758 0.91329 0.84449 0.95970 0.91731 0.92739 0.93916 0.94248 0.94143 0.94797 0.91745 0.96929 0.96700 0.93243 0.90346 0.94815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.62 60.07 0.58 0.78 16 2 N -0.55 -5.12 4.91 -242.96 -1.19 -6.31 16 3 C 0.05 0.44 5.46 -3.84 -0.02 0.42 16 4 C -0.12 -0.88 6.09 -26.66 -0.16 -1.04 16 5 C -0.12 -0.94 5.29 -26.61 -0.14 -1.08 16 6 C -0.08 -0.76 2.35 -90.54 -0.21 -0.98 16 7 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 8 C -0.11 -1.12 4.94 -26.73 -0.13 -1.25 16 9 C 0.06 0.70 5.44 -3.83 -0.02 0.68 16 10 N -0.69 -10.10 5.71 -113.79 -0.65 -10.75 16 11 C 0.07 1.24 4.65 -3.83 -0.02 1.23 16 12 C -0.06 -1.18 0.60 -154.51 -0.09 -1.27 16 13 C -0.12 -2.27 8.06 37.16 0.30 -1.98 16 14 C -0.13 -2.42 7.89 37.16 0.29 -2.13 16 15 C 0.03 0.83 4.04 -27.88 -0.11 0.72 16 16 C -0.50 -13.94 7.65 -34.44 -0.26 -14.20 16 17 H 0.06 1.60 5.68 -52.49 -0.30 1.30 16 18 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 19 N -0.90 -27.09 13.29 55.43 0.74 -26.35 16 20 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 21 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 C 0.06 0.57 4.48 -3.83 -0.02 0.56 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.56 8.02 -51.93 -0.42 0.14 16 27 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.03 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 37 H 0.07 0.87 6.59 -51.93 -0.34 0.53 16 38 H 0.34 4.74 6.77 -39.29 -0.27 4.47 16 39 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.05 1.14 6.62 -51.93 -0.34 0.80 16 42 H 0.04 0.76 7.60 -51.93 -0.39 0.36 16 43 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.03 0.54 6.57 -51.93 -0.34 0.20 16 46 H 0.06 1.31 6.62 -51.93 -0.34 0.97 16 47 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 49 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 50 H 0.08 0.81 6.51 -51.93 -0.34 0.47 16 51 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 380.78 15.07 5.74 5.74 Total: -1.00 -29.28 380.78 -10.76 -40.04 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -10.25 Total: -0.97 kcal Atomic # 6 Polarization: -18.00 SS G_CDS: -0.12 Total: -18.13 kcal Atomic # 7 Polarization: -42.31 SS G_CDS: -1.11 Total: -43.41 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.28 -10.76 -40.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459737612.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.320 kcal (2) G-P(sol) polarization free energy of solvation -29.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds