Wall clock time and date at job start Tue Mar 31 2020 05:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46843 * 110.99970 * 2 1 4 4 C 1.53042 * 109.52278 * 174.15687 * 3 2 1 5 5 C 1.53127 * 109.27596 * 59.17923 * 4 3 2 6 6 C 1.53123 * 109.15019 * 302.34079 * 5 4 3 7 7 H 1.08997 * 109.51083 * 297.71779 * 6 5 4 8 8 C 1.53000 * 109.49034 * 177.60705 * 6 5 4 9 9 C 1.53002 * 109.46936 * 175.20114 * 8 6 5 10 10 N 1.46908 * 109.47122 * 179.97438 * 9 8 6 11 11 C 1.46897 * 110.99889 * 179.97438 * 10 9 8 12 12 C 1.53005 * 109.47050 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.47096 * 300.00415 * 12 11 10 14 14 C 1.53000 * 109.46551 * 60.00125 * 12 11 10 15 15 C 1.52994 * 109.47068 * 180.02562 * 12 11 10 16 16 C 1.50698 * 109.46999 * 180.02562 * 15 12 11 17 17 H 1.08001 * 120.00128 * 0.02562 * 16 15 12 18 18 C 1.37876 * 120.00084 * 180.02562 * 16 15 12 19 19 N 1.31513 * 120.00068 * 179.97438 * 18 16 15 20 20 Si 1.86810 * 119.99935 * 359.97438 * 18 16 15 21 21 H 1.48494 * 109.46849 * 90.00298 * 20 18 16 22 22 H 1.48500 * 109.46959 * 210.00080 * 20 18 16 23 23 H 1.48500 * 109.46685 * 330.00204 * 20 18 16 24 24 C 1.46847 * 110.99982 * 235.78635 * 2 1 3 25 25 H 1.09000 * 109.47319 * 184.20936 * 1 2 3 26 26 H 1.09002 * 109.47520 * 304.21131 * 1 2 3 27 27 H 1.09003 * 109.47227 * 64.20889 * 1 2 3 28 28 H 1.08993 * 109.46313 * 294.17341 * 3 2 1 29 29 H 1.09004 * 109.46429 * 54.14692 * 3 2 1 30 30 H 1.08997 * 109.50758 * 179.11703 * 4 3 2 31 31 H 1.08999 * 109.50480 * 299.24136 * 4 3 2 32 32 H 1.09003 * 109.52393 * 62.24889 * 5 4 3 33 33 H 1.08998 * 109.52208 * 182.44010 * 5 4 3 34 34 H 1.09004 * 109.47259 * 295.20104 * 8 6 5 35 35 H 1.08997 * 109.47264 * 55.20180 * 8 6 5 36 36 H 1.08995 * 109.47306 * 299.99482 * 9 8 6 37 37 H 1.08997 * 109.47091 * 59.99959 * 9 8 6 38 38 H 1.00903 * 110.99462 * 56.04723 * 10 9 8 39 39 H 1.08995 * 109.47437 * 300.00026 * 11 10 9 40 40 H 1.09000 * 109.46878 * 60.00232 * 11 10 9 41 41 H 1.09005 * 109.47227 * 59.99933 * 13 12 11 42 42 H 1.09000 * 109.47363 * 179.97438 * 13 12 11 43 43 H 1.09000 * 109.47108 * 299.99936 * 13 12 11 44 44 H 1.08995 * 109.47330 * 60.00345 * 14 12 11 45 45 H 1.09011 * 109.46514 * 179.97438 * 14 12 11 46 46 H 1.08995 * 109.47499 * 299.99926 * 14 12 11 47 47 H 1.08994 * 109.47376 * 300.00572 * 15 12 11 48 48 H 1.09000 * 109.46896 * 60.00211 * 15 12 11 49 49 H 0.97005 * 120.00051 * 179.97438 * 19 18 16 50 50 H 1.09002 * 109.46481 * 305.85957 * 24 2 1 51 51 H 1.08994 * 109.46283 * 65.83811 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3341 0.1468 5 6 4.1188 0.5368 -1.0143 6 6 3.5180 -0.8716 -1.0205 7 1 3.7811 -1.3836 -0.0949 8 6 4.0682 -1.6560 -2.2133 9 6 3.5619 -3.0986 -2.1522 10 7 4.0896 -3.8517 -3.2979 11 6 3.6236 -5.2445 -3.2719 12 6 4.1921 -5.9950 -4.4780 13 6 3.7172 -5.3222 -5.7675 14 6 5.7208 -5.9675 -4.4215 15 6 3.7063 -7.4455 -4.4514 16 6 4.2666 -8.1849 -5.6389 17 1 4.9057 -7.6716 -6.3422 18 6 3.9635 -9.5166 -5.8278 19 7 4.4521 -10.1616 -6.8645 20 14 2.8586 -10.4046 -4.6110 21 1 1.4436 -10.2774 -5.0432 22 1 3.2331 -11.8406 -4.5591 23 1 3.0208 -9.8015 -3.2637 24 6 1.9952 -0.7709 -1.1337 25 1 -0.3634 -1.0249 0.0754 26 1 -0.3634 0.5778 0.8498 27 1 -0.3634 0.4471 -0.9253 28 1 1.7324 1.8608 -0.9375 29 1 1.5634 1.9257 0.8330 30 1 3.9099 2.3511 0.1311 31 1 3.7813 0.8567 1.0907 32 1 3.8887 1.0353 -1.9560 33 1 5.1997 0.4713 -0.8904 34 1 3.7313 -1.1916 -3.1401 35 1 5.1576 -1.6517 -2.1797 36 1 3.8987 -3.5630 -1.2255 37 1 2.4724 -3.1029 -2.1858 38 1 5.0973 -3.8082 -3.3258 39 1 3.9616 -5.7237 -2.3532 40 1 2.5346 -5.2641 -3.3126 41 1 4.0629 -4.2887 -5.7867 42 1 4.1224 -5.8566 -6.6267 43 1 2.6281 -5.3418 -5.8077 44 1 6.0591 -6.4467 -3.5030 45 1 6.1258 -6.5025 -5.2806 46 1 6.0665 -4.9340 -4.4408 47 1 4.0442 -7.9251 -3.5327 48 1 2.6172 -7.4647 -4.4918 49 1 4.2391 -11.0987 -6.9971 50 1 1.5633 -1.7716 -1.1242 51 1 1.7326 -0.2709 -2.0659 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459737634.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:14 Heat of formation + Delta-G solvation = -30.090565 kcal Electronic energy + Delta-G solvation = -22824.933663 eV Core-core repulsion = 19757.627818 eV Total energy + Delta-G solvation = -3067.305845 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.54626 -37.78660 -35.55691 -33.81780 -32.46728 -31.71423 -28.39286 -27.37907 -27.04942 -26.34676 -25.03989 -23.59793 -22.72540 -21.64951 -21.03203 -19.93720 -17.78891 -16.77062 -16.16402 -15.98734 -15.30470 -14.86973 -14.85435 -14.48614 -14.30559 -13.90203 -13.62761 -13.56847 -13.14323 -13.04262 -12.63046 -12.51176 -12.33038 -12.30155 -12.05121 -11.92884 -11.62784 -11.35702 -11.18524 -11.02140 -10.90895 -10.85751 -10.74385 -10.57560 -10.48625 -10.33547 -10.30576 -9.76062 -9.66136 -9.24436 -8.87397 -8.63381 -8.47800 -8.10923 -5.98102 -3.94064 3.33740 3.41237 3.44951 3.61738 4.26751 4.49443 4.50117 4.56517 4.68121 4.78769 5.03195 5.09209 5.12380 5.21216 5.24518 5.27369 5.34965 5.35298 5.46976 5.50861 5.56552 5.60247 5.64323 5.67497 5.70557 5.76709 5.81549 5.85991 5.91099 5.99975 6.13166 6.18588 6.26787 6.29872 6.45395 6.62458 6.72606 6.76455 6.79163 6.82512 7.10575 7.16526 7.22705 7.34732 7.36282 7.49490 7.68156 7.87782 8.62072 9.07944 9.65170 11.15025 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.029936 B = 0.002750 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.102041 B =10178.201285 C =10728.709918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.545 5.545 3 C 0.055 3.945 4 C -0.117 4.117 5 C -0.116 4.116 6 C -0.082 4.082 7 H 0.077 0.923 8 C -0.111 4.111 9 C 0.057 3.943 10 N -0.687 5.687 11 C 0.068 3.932 12 C -0.049 4.049 13 C -0.117 4.117 14 C -0.130 4.130 15 C -0.005 4.005 16 C -0.506 4.506 17 H 0.078 0.922 18 C 0.064 3.936 19 N -0.906 5.906 20 Si 0.876 3.124 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.267 1.267 24 C 0.059 3.941 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.024 0.976 28 H 0.031 0.969 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.024 0.976 37 H 0.068 0.932 38 H 0.338 0.662 39 H 0.022 0.978 40 H 0.064 0.936 41 H 0.044 0.956 42 H 0.059 0.941 43 H 0.038 0.962 44 H 0.039 0.961 45 H 0.069 0.931 46 H 0.036 0.964 47 H 0.012 0.988 48 H 0.010 0.990 49 H 0.261 0.739 50 H 0.078 0.922 51 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.546 23.309 14.243 27.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.269 5.269 3 C -0.073 4.073 4 C -0.155 4.155 5 C -0.154 4.154 6 C -0.101 4.101 7 H 0.096 0.904 8 C -0.149 4.149 9 C -0.073 4.073 10 N -0.319 5.319 11 C -0.061 4.061 12 C -0.049 4.049 13 C -0.175 4.175 14 C -0.188 4.188 15 C -0.043 4.043 16 C -0.544 4.544 17 H 0.096 0.904 18 C -0.136 4.136 19 N -0.546 5.546 20 Si 0.703 3.297 21 H -0.205 1.205 22 H -0.216 1.216 23 H -0.192 1.192 24 C -0.069 4.069 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.043 0.957 28 H 0.049 0.951 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.043 0.957 37 H 0.087 0.913 38 H 0.157 0.843 39 H 0.040 0.960 40 H 0.083 0.917 41 H 0.063 0.937 42 H 0.078 0.922 43 H 0.057 0.943 44 H 0.058 0.942 45 H 0.088 0.912 46 H 0.055 0.945 47 H 0.030 0.970 48 H 0.028 0.972 49 H 0.071 0.929 50 H 0.096 0.904 51 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -3.896 23.117 14.163 27.389 hybrid contribution -0.464 -0.677 0.598 1.016 sum -4.359 22.440 14.761 27.211 Atomic orbital electron populations 1.22351 0.87290 1.02407 1.00318 1.61913 1.07536 1.13634 1.43865 1.22099 0.95776 0.89250 1.00220 1.21588 0.94345 1.00074 0.99505 1.21637 1.00017 0.95361 0.98378 1.21163 0.94019 0.95767 0.99199 0.90434 1.21583 1.00437 0.94868 0.98031 1.21994 1.00173 0.93231 0.91862 1.60565 1.15236 1.13520 1.42558 1.22120 0.99759 0.86674 0.97549 1.20415 0.94927 0.96104 0.93484 1.21610 0.99767 0.98664 0.97415 1.21777 0.95761 0.99043 1.02190 1.19632 0.95768 0.91333 0.97540 1.21142 1.30051 0.94836 1.08364 0.90423 1.25022 0.95855 0.97612 0.95153 1.69911 1.45645 1.10260 1.28774 0.86846 0.81340 0.78820 0.82649 1.20451 1.21589 1.19180 1.22219 0.95305 0.98300 0.91031 0.91220 0.91495 0.95724 0.95056 0.91009 0.91610 0.91120 0.92177 0.91661 0.91146 0.91862 0.95747 0.91335 0.84279 0.95991 0.91747 0.93678 0.92173 0.94296 0.94183 0.91183 0.94550 0.96964 0.97184 0.92914 0.90407 0.94768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.59 60.06 0.58 0.77 16 2 N -0.55 -4.94 4.91 -242.97 -1.19 -6.13 16 3 C 0.05 0.42 5.46 -3.83 -0.02 0.40 16 4 C -0.12 -0.85 6.09 -26.64 -0.16 -1.01 16 5 C -0.12 -0.91 5.29 -26.60 -0.14 -1.05 16 6 C -0.08 -0.73 2.35 -90.54 -0.21 -0.94 16 7 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 8 C -0.11 -1.08 4.95 -26.73 -0.13 -1.21 16 9 C 0.06 0.66 5.44 -3.82 -0.02 0.64 16 10 N -0.69 -9.63 5.71 -113.78 -0.65 -10.28 16 11 C 0.07 1.13 4.65 -3.82 -0.02 1.11 16 12 C -0.05 -0.95 0.60 -154.51 -0.09 -1.05 16 13 C -0.12 -2.28 8.06 37.16 0.30 -1.98 16 14 C -0.13 -2.42 7.89 37.16 0.29 -2.12 16 15 C 0.00 -0.12 3.11 -27.89 -0.09 -0.20 16 16 C -0.51 -14.07 8.20 -34.44 -0.28 -14.35 16 17 H 0.08 2.30 5.92 -52.49 -0.31 1.99 16 18 C 0.06 1.86 5.47 -17.82 -0.10 1.76 16 19 N -0.91 -27.95 13.96 55.43 0.77 -27.18 16 20 Si 0.88 21.95 27.47 -169.99 -4.67 17.28 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 23 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 24 C 0.06 0.55 4.48 -3.84 -0.02 0.53 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 27 H 0.02 0.19 8.14 -51.93 -0.42 -0.24 16 28 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.07 0.82 6.59 -51.93 -0.34 0.48 16 38 H 0.34 4.57 6.77 -39.29 -0.27 4.30 16 39 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.04 0.79 7.60 -51.93 -0.39 0.39 16 42 H 0.06 1.29 6.62 -51.93 -0.34 0.95 16 43 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.07 1.46 6.62 -51.92 -0.34 1.12 16 46 H 0.04 0.57 6.57 -51.93 -0.34 0.23 16 47 H 0.01 0.29 7.20 -51.93 -0.37 -0.08 16 48 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 49 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 50 H 0.08 0.76 6.59 -51.93 -0.34 0.42 16 51 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 377.25 15.07 5.69 5.69 Total: -1.00 -29.60 377.25 -10.39 -39.99 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -10.22 Total: -0.67 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: -0.12 Total: -18.70 kcal Atomic # 7 Polarization: -42.52 SS G_CDS: -1.07 Total: -43.59 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.67 Total: 17.28 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.60 -10.39 -39.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459737634.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.904 kcal (2) G-P(sol) polarization free energy of solvation -29.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds