Wall clock time and date at job start Tue Mar 31 2020 05:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46843 * 110.99970 * 2 1 4 4 C 1.53042 * 109.52278 * 174.15687 * 3 2 1 5 5 C 1.53127 * 109.27596 * 59.17923 * 4 3 2 6 6 C 1.53123 * 109.15019 * 302.34079 * 5 4 3 7 7 H 1.08997 * 109.51083 * 297.71779 * 6 5 4 8 8 C 1.53000 * 109.49034 * 177.60705 * 6 5 4 9 9 C 1.53002 * 109.46936 * 175.20114 * 8 6 5 10 10 N 1.46908 * 109.47122 * 179.97438 * 9 8 6 11 11 C 1.46897 * 110.99889 * 179.97438 * 10 9 8 12 12 C 1.53005 * 109.47050 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.47096 * 300.00415 * 12 11 10 14 14 C 1.53000 * 109.46551 * 60.00125 * 12 11 10 15 15 C 1.52994 * 109.47068 * 180.02562 * 12 11 10 16 16 C 1.50698 * 109.46999 * 180.02562 * 15 12 11 17 17 H 1.08001 * 120.00128 * 0.02562 * 16 15 12 18 18 C 1.37876 * 120.00084 * 180.02562 * 16 15 12 19 19 N 1.31513 * 120.00068 * 179.97438 * 18 16 15 20 20 Si 1.86810 * 119.99935 * 359.97438 * 18 16 15 21 21 H 1.48494 * 109.46849 * 90.00298 * 20 18 16 22 22 H 1.48500 * 109.46959 * 210.00080 * 20 18 16 23 23 H 1.48500 * 109.46685 * 330.00204 * 20 18 16 24 24 C 1.46847 * 110.99982 * 235.78635 * 2 1 3 25 25 H 1.09000 * 109.47319 * 184.20936 * 1 2 3 26 26 H 1.09002 * 109.47520 * 304.21131 * 1 2 3 27 27 H 1.09003 * 109.47227 * 64.20889 * 1 2 3 28 28 H 1.08993 * 109.46313 * 294.17341 * 3 2 1 29 29 H 1.09004 * 109.46429 * 54.14692 * 3 2 1 30 30 H 1.08997 * 109.50758 * 179.11703 * 4 3 2 31 31 H 1.08999 * 109.50480 * 299.24136 * 4 3 2 32 32 H 1.09003 * 109.52393 * 62.24889 * 5 4 3 33 33 H 1.08998 * 109.52208 * 182.44010 * 5 4 3 34 34 H 1.09004 * 109.47259 * 295.20104 * 8 6 5 35 35 H 1.08997 * 109.47264 * 55.20180 * 8 6 5 36 36 H 1.08995 * 109.47306 * 299.99482 * 9 8 6 37 37 H 1.08997 * 109.47091 * 59.99959 * 9 8 6 38 38 H 1.00903 * 110.99462 * 56.04723 * 10 9 8 39 39 H 1.08995 * 109.47437 * 300.00026 * 11 10 9 40 40 H 1.09000 * 109.46878 * 60.00232 * 11 10 9 41 41 H 1.09005 * 109.47227 * 59.99933 * 13 12 11 42 42 H 1.09000 * 109.47363 * 179.97438 * 13 12 11 43 43 H 1.09000 * 109.47108 * 299.99936 * 13 12 11 44 44 H 1.08995 * 109.47330 * 60.00345 * 14 12 11 45 45 H 1.09011 * 109.46514 * 179.97438 * 14 12 11 46 46 H 1.08995 * 109.47499 * 299.99926 * 14 12 11 47 47 H 1.08994 * 109.47376 * 300.00572 * 15 12 11 48 48 H 1.09000 * 109.46896 * 60.00211 * 15 12 11 49 49 H 0.97005 * 120.00051 * 179.97438 * 19 18 16 50 50 H 1.09002 * 109.46481 * 305.85957 * 24 2 1 51 51 H 1.08994 * 109.46283 * 65.83811 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3341 0.1468 5 6 4.1188 0.5368 -1.0143 6 6 3.5180 -0.8716 -1.0205 7 1 3.7811 -1.3836 -0.0949 8 6 4.0682 -1.6560 -2.2133 9 6 3.5619 -3.0986 -2.1522 10 7 4.0896 -3.8517 -3.2979 11 6 3.6236 -5.2445 -3.2719 12 6 4.1921 -5.9950 -4.4780 13 6 3.7172 -5.3222 -5.7675 14 6 5.7208 -5.9675 -4.4215 15 6 3.7063 -7.4455 -4.4514 16 6 4.2666 -8.1849 -5.6389 17 1 4.9057 -7.6716 -6.3422 18 6 3.9635 -9.5166 -5.8278 19 7 4.4521 -10.1616 -6.8645 20 14 2.8586 -10.4046 -4.6110 21 1 1.4436 -10.2774 -5.0432 22 1 3.2331 -11.8406 -4.5591 23 1 3.0208 -9.8015 -3.2637 24 6 1.9952 -0.7709 -1.1337 25 1 -0.3634 -1.0249 0.0754 26 1 -0.3634 0.5778 0.8498 27 1 -0.3634 0.4471 -0.9253 28 1 1.7324 1.8608 -0.9375 29 1 1.5634 1.9257 0.8330 30 1 3.9099 2.3511 0.1311 31 1 3.7813 0.8567 1.0907 32 1 3.8887 1.0353 -1.9560 33 1 5.1997 0.4713 -0.8904 34 1 3.7313 -1.1916 -3.1401 35 1 5.1576 -1.6517 -2.1797 36 1 3.8987 -3.5630 -1.2255 37 1 2.4724 -3.1029 -2.1858 38 1 5.0973 -3.8082 -3.3258 39 1 3.9616 -5.7237 -2.3532 40 1 2.5346 -5.2641 -3.3126 41 1 4.0629 -4.2887 -5.7867 42 1 4.1224 -5.8566 -6.6267 43 1 2.6281 -5.3418 -5.8077 44 1 6.0591 -6.4467 -3.5030 45 1 6.1258 -6.5025 -5.2806 46 1 6.0665 -4.9340 -4.4408 47 1 4.0442 -7.9251 -3.5327 48 1 2.6172 -7.4647 -4.4918 49 1 4.2391 -11.0987 -6.9971 50 1 1.5633 -1.7716 -1.1242 51 1 1.7326 -0.2709 -2.0659 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459737634.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:13 Heat of formation + Delta-G solvation = -48.190473 kcal Electronic energy + Delta-G solvation = -22825.718534 eV Core-core repulsion = 19757.627818 eV Total energy + Delta-G solvation = -3068.090716 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.23481 -39.20305 -36.62019 -34.91571 -34.13041 -32.76223 -29.88968 -28.75341 -27.91619 -27.68432 -26.36984 -24.57561 -23.79761 -23.00916 -21.80955 -20.60430 -19.40529 -18.86795 -16.99341 -16.80773 -16.34609 -16.21704 -15.81180 -15.53528 -15.42879 -15.13360 -14.90429 -14.72030 -14.40284 -14.06017 -14.02291 -13.73058 -13.59714 -13.13407 -13.04108 -12.90257 -12.81949 -12.71203 -12.59595 -12.34554 -12.24408 -12.10177 -11.99164 -11.78172 -11.70803 -11.50001 -11.34804 -11.27378 -11.10392 -10.91441 -10.74528 -10.70132 -9.29432 -9.24613 -8.21812 -6.21992 1.35614 1.36963 1.48177 2.39334 2.98379 3.13097 3.27862 3.77961 3.91970 3.98223 4.09215 4.15678 4.20284 4.32052 4.37554 4.39495 4.45302 4.52297 4.56878 4.59876 4.68118 4.71319 4.76701 4.80339 4.86128 4.91750 4.95430 4.99167 5.00915 5.05116 5.07928 5.09438 5.13750 5.18132 5.19175 5.31746 5.37261 5.38607 5.45165 5.53277 5.56111 5.62569 5.76341 5.82378 6.12346 6.14748 6.17602 6.42267 6.57685 6.85268 7.40432 8.94392 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.029936 B = 0.002750 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.102041 B =10178.201285 C =10728.709918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.557 5.557 3 C 0.053 3.947 4 C -0.115 4.115 5 C -0.115 4.115 6 C -0.076 4.076 7 H 0.071 0.929 8 C -0.101 4.101 9 C 0.060 3.940 10 N -0.688 5.688 11 C 0.080 3.920 12 C -0.049 4.049 13 C -0.108 4.108 14 C -0.124 4.124 15 C -0.004 4.004 16 C -0.503 4.503 17 H 0.045 0.955 18 C 0.000 4.000 19 N -0.955 5.955 20 Si 0.941 3.059 21 H -0.271 1.271 22 H -0.288 1.288 23 H -0.250 1.250 24 C 0.061 3.939 25 H 0.067 0.933 26 H 0.077 0.923 27 H 0.024 0.976 28 H 0.029 0.971 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.026 0.974 37 H 0.066 0.934 38 H 0.343 0.657 39 H 0.024 0.976 40 H 0.062 0.938 41 H 0.066 0.934 42 H 0.028 0.972 43 H 0.036 0.964 44 H 0.043 0.957 45 H 0.036 0.964 46 H 0.067 0.933 47 H 0.012 0.988 48 H 0.010 0.990 49 H 0.262 0.738 50 H 0.070 0.930 51 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.109 25.039 16.429 30.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.282 5.282 3 C -0.075 4.075 4 C -0.153 4.153 5 C -0.152 4.152 6 C -0.095 4.095 7 H 0.090 0.910 8 C -0.139 4.139 9 C -0.069 4.069 10 N -0.320 5.320 11 C -0.049 4.049 12 C -0.049 4.049 13 C -0.166 4.166 14 C -0.181 4.181 15 C -0.042 4.042 16 C -0.541 4.541 17 H 0.063 0.937 18 C -0.196 4.196 19 N -0.597 5.597 20 Si 0.765 3.235 21 H -0.196 1.196 22 H -0.214 1.214 23 H -0.174 1.174 24 C -0.067 4.067 25 H 0.086 0.914 26 H 0.096 0.904 27 H 0.042 0.958 28 H 0.047 0.953 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.045 0.955 37 H 0.084 0.916 38 H 0.163 0.837 39 H 0.043 0.957 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.047 0.953 43 H 0.055 0.945 44 H 0.062 0.938 45 H 0.055 0.945 46 H 0.086 0.914 47 H 0.031 0.969 48 H 0.029 0.971 49 H 0.071 0.929 50 H 0.088 0.912 51 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -4.460 24.874 16.364 30.107 hybrid contribution -0.254 -1.143 -0.127 1.178 sum -4.714 23.732 16.237 29.138 Atomic orbital electron populations 1.22384 0.86713 1.02544 1.00786 1.61944 1.08244 1.14371 1.43611 1.22163 0.96209 0.88657 1.00489 1.21583 0.93943 1.00799 0.98933 1.21625 1.00389 0.94600 0.98614 1.21089 0.93726 0.96322 0.98397 0.91048 1.21486 1.00767 0.93514 0.98144 1.22019 1.00010 0.93975 0.90941 1.60511 1.15644 1.11913 1.43928 1.21848 0.99442 0.87846 0.95791 1.20355 0.95598 0.93983 0.95003 1.21508 0.99440 0.99437 0.96183 1.21693 0.95007 1.00628 1.00818 1.19606 0.95509 0.93713 0.95364 1.21426 1.28808 0.94968 1.08874 0.93699 1.25929 0.97721 0.98776 0.97127 1.70064 1.47795 1.10706 1.31093 0.85797 0.79367 0.77464 0.80831 1.19631 1.21393 1.17361 1.22169 0.95617 0.97929 0.90975 0.91394 0.90405 0.95759 0.95276 0.90094 0.90127 0.91569 0.92269 0.90972 0.91633 0.91162 0.95541 0.91602 0.83732 0.95745 0.91914 0.91476 0.95329 0.94479 0.93775 0.94487 0.91403 0.96937 0.97125 0.92892 0.91173 0.95406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.59 127.69 1.22 1.56 16 2 N -0.56 -9.24 4.91 -922.61 -4.53 -13.77 16 3 C 0.05 0.72 5.46 86.33 0.47 1.19 16 4 C -0.11 -1.42 6.09 30.65 0.19 -1.23 16 5 C -0.11 -1.54 5.29 30.68 0.16 -1.38 16 6 C -0.08 -1.20 2.35 -10.74 -0.03 -1.23 16 7 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 8 C -0.10 -1.72 4.95 30.59 0.15 -1.57 16 9 C 0.06 1.25 5.44 86.30 0.47 1.72 16 10 N -0.69 -17.49 5.71 -513.88 -2.94 -20.43 16 11 C 0.08 2.48 4.65 86.31 0.40 2.89 16 12 C -0.05 -1.86 0.60 -52.18 -0.03 -1.89 16 13 C -0.11 -4.15 8.06 71.98 0.58 -3.57 16 14 C -0.12 -4.48 7.89 71.98 0.57 -3.92 16 15 C 0.00 -0.19 3.11 29.85 0.09 -0.10 16 16 C -0.50 -28.53 8.20 25.60 0.21 -28.32 16 17 H 0.04 2.79 5.92 -2.91 -0.02 2.77 16 18 C 0.00 0.01 5.47 84.65 0.46 0.47 16 19 N -0.95 -60.50 13.96 21.45 0.30 -60.21 16 20 Si 0.94 45.17 27.47 68.60 1.88 47.06 16 21 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 22 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 23 H -0.25 -11.20 6.54 99.48 0.65 -10.55 16 24 C 0.06 1.05 4.48 86.32 0.39 1.44 16 25 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.08 0.90 8.09 -2.39 -0.02 0.89 16 27 H 0.02 0.34 8.14 -2.39 -0.02 0.32 16 28 H 0.03 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.08 0.95 8.09 -2.38 -0.02 0.93 16 30 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.06 1.21 8.14 -2.39 -0.02 1.20 16 35 H 0.07 1.12 8.14 -2.39 -0.02 1.11 16 36 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.07 1.44 6.59 -2.39 -0.02 1.43 16 38 H 0.34 8.21 6.77 -89.69 -0.61 7.60 16 39 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.07 2.24 7.60 -2.38 -0.02 2.23 16 42 H 0.03 1.24 6.62 -2.39 -0.02 1.23 16 43 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.04 1.56 6.62 -2.38 -0.02 1.55 16 46 H 0.07 1.99 6.57 -2.39 -0.02 1.98 16 47 H 0.01 0.58 7.20 -2.39 -0.02 0.56 16 48 H 0.01 0.49 7.57 -2.39 -0.02 0.47 16 49 H 0.26 15.63 8.31 -92.70 -0.77 14.86 16 50 H 0.07 1.30 6.59 -2.39 -0.02 1.28 16 51 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 Total: -1.00 -64.05 377.25 0.22 -63.84 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: 0.19 Total: 17.44 kcal Atomic # 6 Polarization: -39.25 SS G_CDS: 5.31 Total: -33.94 kcal Atomic # 7 Polarization: -87.23 SS G_CDS: -7.17 Total: -94.40 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.88 Total: 47.06 kcal Total: -64.05 0.22 -63.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459737634.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.648 kcal (2) G-P(sol) polarization free energy of solvation -64.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds