Wall clock time and date at job start Tue Mar 31 2020 05:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46498 * 109.46947 * 2 1 4 4 C 1.46500 * 119.99926 * 269.99500 * 3 2 1 5 5 C 1.50706 * 109.47358 * 270.00709 * 4 3 2 6 6 H 1.07992 * 119.99947 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99390 * 180.02562 * 5 4 3 8 8 N 1.31517 * 119.99254 * 179.97438 * 7 5 4 9 9 Si 1.86793 * 120.00679 * 359.97438 * 7 5 4 10 10 H 1.48506 * 109.47214 * 90.00059 * 9 7 5 11 11 H 1.48498 * 109.47200 * 210.00126 * 9 7 5 12 12 H 1.48497 * 109.47212 * 330.00422 * 9 7 5 13 13 C 1.34771 * 120.00239 * 90.00251 * 3 2 1 14 14 O 1.21277 * 120.00576 * 179.97438 * 13 3 2 15 15 C 1.50707 * 119.99908 * 359.97438 * 13 3 2 16 16 N 1.46897 * 109.47187 * 179.97438 * 15 13 3 17 17 C 1.46899 * 110.99599 * 66.04747 * 16 15 13 18 18 C 1.46894 * 111.00269 * 190.00093 * 16 15 13 19 19 C 1.53783 * 113.61701 * 180.02562 * 18 16 15 20 20 C 1.53785 * 87.07804 * 219.93397 * 19 18 16 21 21 C 1.53006 * 113.61096 * 139.97884 * 20 19 18 22 22 C 1.53002 * 113.61471 * 270.79457 * 20 19 18 23 23 C 1.53781 * 87.17620 * 25.38900 * 20 19 18 24 24 H 1.08996 * 109.47349 * 60.00251 * 1 2 3 25 25 H 1.08998 * 109.47193 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47005 * 299.99844 * 1 2 3 27 27 H 1.09001 * 109.47051 * 239.99642 * 2 1 3 28 28 H 1.09003 * 109.46599 * 120.00133 * 2 1 3 29 29 H 1.09004 * 109.46714 * 30.00823 * 4 3 2 30 30 H 1.08998 * 109.47206 * 149.99980 * 4 3 2 31 31 H 0.97001 * 120.00124 * 179.97438 * 8 7 5 32 32 H 1.09004 * 109.47130 * 60.00325 * 15 13 3 33 33 H 1.08994 * 109.47249 * 300.00111 * 15 13 3 34 34 H 1.08996 * 109.47270 * 183.95197 * 17 16 15 35 35 H 1.08998 * 109.47472 * 303.95277 * 17 16 15 36 36 H 1.09007 * 109.47209 * 63.95555 * 17 16 15 37 37 H 1.09004 * 112.85111 * 311.20201 * 18 16 15 38 38 H 1.08997 * 113.61737 * 105.38463 * 19 18 16 39 39 H 1.09000 * 113.61138 * 334.47603 * 19 18 16 40 40 H 1.09001 * 109.47002 * 181.52532 * 21 20 19 41 41 H 1.08993 * 109.46955 * 301.52970 * 21 20 19 42 42 H 1.09000 * 109.47050 * 61.52798 * 21 20 19 43 43 H 1.08999 * 109.47105 * 298.47603 * 22 20 19 44 44 H 1.09000 * 109.46611 * 58.47476 * 22 20 19 45 45 H 1.08998 * 109.47047 * 178.47668 * 22 20 19 46 46 H 1.08998 * 113.61545 * 89.15547 * 23 20 19 47 47 H 1.08993 * 113.61303 * 220.06004 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8349 -1.7038 6 1 4.3429 1.2308 -1.0958 7 6 4.1494 2.3904 -2.8775 8 7 5.3916 2.1840 -3.2569 9 14 3.0132 3.4359 -3.9287 10 1 3.1158 4.8561 -3.5069 11 1 3.4068 3.3136 -5.3554 12 1 1.6136 2.9693 -3.7596 13 6 2.2430 2.0166 1.1671 14 8 2.6477 3.1598 1.1672 15 6 1.9913 1.3063 2.4723 16 7 2.3103 2.2061 3.5888 17 6 1.3845 3.3460 3.6271 18 6 2.3062 1.4815 4.8666 19 6 2.6330 2.3690 6.0792 20 6 3.4621 1.1912 6.6183 21 6 4.7782 1.6169 7.2723 22 6 2.6562 0.2193 7.4826 23 6 3.6193 0.7328 5.1589 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.5817 1.6877 -2.0284 30 1 2.0956 3.1410 -1.1385 31 1 5.7177 2.5745 -4.0828 32 1 2.6213 0.4186 2.5303 33 1 0.9433 1.0125 2.5299 34 1 1.6854 4.0320 4.4189 35 1 1.4072 3.8649 2.6688 36 1 0.3739 2.9870 3.8221 37 1 1.4156 0.8678 5.0024 38 1 1.7641 2.6081 6.6922 39 1 3.2308 3.2457 5.8300 40 1 5.3216 0.7322 7.6045 41 1 5.3827 2.1644 6.5492 42 1 4.5679 2.2571 8.1290 43 1 2.2707 0.7443 8.3567 44 1 1.8243 -0.1792 6.9019 45 1 3.2996 -0.5994 7.8050 46 1 4.4871 1.1615 4.6577 47 1 3.5454 -0.3470 5.0301 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459739655.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:56 Heat of formation + Delta-G solvation = -11.264521 kcal Electronic energy + Delta-G solvation = -23322.742331 eV Core-core repulsion = 20120.419749 eV Total energy + Delta-G solvation = -3202.322581 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.16337 -39.00669 -35.85072 -34.99718 -32.67763 -30.42450 -30.06463 -28.78408 -27.59400 -27.15650 -25.49828 -24.53119 -22.95547 -22.08780 -20.51507 -18.43115 -18.17553 -16.89832 -16.64057 -15.90883 -15.51388 -14.97405 -14.87101 -14.51679 -14.17745 -13.77065 -13.59559 -13.45328 -13.35651 -12.95202 -12.79525 -12.63144 -12.47410 -12.19829 -11.93615 -11.90506 -11.70312 -11.51942 -11.48104 -11.24117 -10.95436 -10.89581 -10.75229 -10.64740 -10.47189 -10.29403 -10.11475 -10.08862 -9.48785 -8.88333 -8.55159 -8.11200 -7.64579 -6.04828 -4.03019 3.31248 3.37084 3.39037 3.41839 3.66412 4.22238 4.35544 4.42769 4.53323 4.68769 4.73716 5.04011 5.11488 5.22093 5.28220 5.30542 5.37784 5.46097 5.48919 5.55443 5.56996 5.64871 5.67863 5.70836 5.73575 5.76618 5.79077 5.85140 5.86454 5.98254 6.00062 6.07438 6.15520 6.29860 6.32838 6.39751 6.46669 6.73208 6.97056 7.12172 7.28554 7.42597 7.65734 8.32706 8.51896 8.98692 9.08894 9.55802 11.08744 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022967 B = 0.003921 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.861787 B = 7138.641514 C = 7507.775076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.596 5.596 4 C 0.218 3.782 5 C -0.526 4.526 6 H 0.074 0.926 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.510 3.490 14 O -0.523 6.523 15 C 0.039 3.961 16 N -0.510 5.510 17 C 0.022 3.978 18 C 0.054 3.946 19 C -0.118 4.118 20 C -0.091 4.091 21 C -0.133 4.133 22 C -0.127 4.127 23 C -0.118 4.118 24 H 0.059 0.941 25 H 0.061 0.939 26 H 0.049 0.951 27 H 0.084 0.916 28 H 0.066 0.934 29 H 0.028 0.972 30 H 0.035 0.965 31 H 0.264 0.736 32 H 0.097 0.903 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.089 0.911 36 H 0.013 0.987 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.091 0.909 40 H 0.053 0.947 41 H 0.059 0.941 42 H 0.053 0.947 43 H 0.055 0.945 44 H 0.055 0.945 45 H 0.057 0.943 46 H 0.093 0.907 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.722 -5.515 18.705 21.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.017 4.017 3 N -0.328 5.328 4 C 0.097 3.903 5 C -0.565 4.565 6 H 0.092 0.908 7 C -0.130 4.130 8 N -0.537 5.537 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.296 3.704 14 O -0.399 6.399 15 C -0.092 4.092 16 N -0.234 5.234 17 C -0.126 4.126 18 C -0.055 4.055 19 C -0.156 4.156 20 C -0.092 4.092 21 C -0.191 4.191 22 C -0.184 4.184 23 C -0.156 4.156 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.068 0.932 27 H 0.103 0.897 28 H 0.084 0.916 29 H 0.046 0.954 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.115 0.885 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.108 0.892 36 H 0.032 0.968 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.110 0.890 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.074 0.926 45 H 0.076 0.924 46 H 0.112 0.888 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.903 -4.663 18.458 21.016 hybrid contribution -1.298 0.067 -0.615 1.438 sum -10.201 -4.596 17.843 21.061 Atomic orbital electron populations 1.22233 0.96934 1.01491 1.02096 1.21419 0.93243 0.84050 1.03036 1.47945 1.64554 1.13346 1.07003 1.19610 0.97232 0.93302 0.80106 1.21346 0.95364 1.32747 1.07012 0.90756 1.24858 0.94975 0.95832 0.97381 1.69902 1.15121 1.45104 1.23561 0.86854 0.81451 0.81648 0.79736 1.19937 1.21129 1.19141 1.20181 0.78438 0.87098 0.84722 1.90629 1.44473 1.18000 1.86773 1.22022 1.00069 0.96394 0.90710 1.61846 1.51846 1.08602 1.01140 1.22494 0.92014 0.93674 1.04415 1.23174 0.97281 0.96089 0.88936 1.23114 0.99611 0.97396 0.95494 1.21682 0.96098 0.96564 0.94843 1.21699 0.95960 1.00949 1.00452 1.21596 0.99420 0.98366 0.99061 1.23178 0.98269 0.99419 0.94713 0.92217 0.92028 0.93204 0.89726 0.91560 0.95423 0.94721 0.92625 0.88531 0.92843 0.91649 0.89202 0.96834 0.92120 0.91911 0.89022 0.92782 0.92163 0.92833 0.92563 0.92616 0.92422 0.88809 0.91835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 10.24 37.16 0.38 -1.76 16 2 C 0.11 1.67 5.93 -4.04 -0.02 1.64 16 3 N -0.60 -12.31 2.46 -175.05 -0.43 -12.74 16 4 C 0.22 5.39 4.23 -5.19 -0.02 5.36 16 5 C -0.53 -15.32 9.94 -34.44 -0.34 -15.66 16 6 H 0.07 2.38 8.06 -52.49 -0.42 1.96 16 7 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 8 N -0.90 -28.04 13.96 55.43 0.77 -27.27 16 9 Si 0.88 21.84 27.47 -169.99 -4.67 17.17 16 10 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 13 C 0.51 10.53 7.37 -10.98 -0.08 10.44 16 14 O -0.52 -12.99 13.91 5.56 0.08 -12.91 16 15 C 0.04 0.61 3.97 -4.97 -0.02 0.59 16 16 N -0.51 -7.74 4.47 -235.24 -1.05 -8.79 16 17 C 0.02 0.32 8.97 60.06 0.54 0.86 16 18 C 0.05 0.63 2.85 -66.81 -0.19 0.44 16 19 C -0.12 -1.24 5.76 -25.92 -0.15 -1.39 16 20 C -0.09 -0.86 1.39 -153.69 -0.21 -1.08 16 21 C -0.13 -1.19 9.18 37.16 0.34 -0.85 16 22 C -0.13 -1.01 9.07 37.16 0.34 -0.67 16 23 C -0.12 -1.32 6.81 -25.83 -0.18 -1.50 16 24 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.60 7.22 -51.93 -0.37 0.23 16 27 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 28 H 0.07 0.88 6.44 -51.93 -0.33 0.55 16 29 H 0.03 0.65 7.13 -51.93 -0.37 0.28 16 30 H 0.03 0.92 6.85 -51.93 -0.36 0.56 16 31 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 32 H 0.10 1.39 7.17 -51.93 -0.37 1.02 16 33 H 0.05 0.72 7.16 -51.93 -0.37 0.34 16 34 H 0.06 0.86 7.05 -51.93 -0.37 0.50 16 35 H 0.09 1.59 5.82 -51.93 -0.30 1.29 16 36 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 37 H 0.06 0.67 7.64 -51.93 -0.40 0.27 16 38 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 39 H 0.09 1.07 7.85 -51.93 -0.41 0.66 16 40 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.59 7.98 -51.93 -0.41 0.17 16 42 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.05 0.44 7.34 -51.93 -0.38 0.05 16 45 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.09 1.23 7.99 -51.93 -0.41 0.82 16 47 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 LS Contribution 365.43 15.07 5.51 5.51 Total: -1.00 -33.53 365.43 -8.18 -41.71 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -8.67 Total: -1.13 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: 0.28 Total: -1.55 kcal Atomic # 7 Polarization: -48.09 SS G_CDS: -0.71 Total: -48.79 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: 0.08 Total: -12.91 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.67 Total: 17.17 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.53 -8.18 -41.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459739655.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.444 kcal (2) G-P(sol) polarization free energy of solvation -33.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds