Wall clock time and date at job start Tue Mar 31 2020 05:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46498 * 109.46947 * 2 1 4 4 C 1.46500 * 119.99926 * 269.99500 * 3 2 1 5 5 C 1.50706 * 109.47358 * 270.00709 * 4 3 2 6 6 H 1.07992 * 119.99947 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99390 * 180.02562 * 5 4 3 8 8 N 1.31517 * 119.99254 * 179.97438 * 7 5 4 9 9 Si 1.86793 * 120.00679 * 359.97438 * 7 5 4 10 10 H 1.48506 * 109.47214 * 90.00059 * 9 7 5 11 11 H 1.48498 * 109.47200 * 210.00126 * 9 7 5 12 12 H 1.48497 * 109.47212 * 330.00422 * 9 7 5 13 13 C 1.34771 * 120.00239 * 90.00251 * 3 2 1 14 14 O 1.21277 * 120.00576 * 179.97438 * 13 3 2 15 15 C 1.50707 * 119.99908 * 359.97438 * 13 3 2 16 16 N 1.46897 * 109.47187 * 179.97438 * 15 13 3 17 17 C 1.46899 * 110.99599 * 66.04747 * 16 15 13 18 18 C 1.46894 * 111.00269 * 190.00093 * 16 15 13 19 19 C 1.53783 * 113.61701 * 180.02562 * 18 16 15 20 20 C 1.53785 * 87.07804 * 219.93397 * 19 18 16 21 21 C 1.53006 * 113.61096 * 139.97884 * 20 19 18 22 22 C 1.53002 * 113.61471 * 270.79457 * 20 19 18 23 23 C 1.53781 * 87.17620 * 25.38900 * 20 19 18 24 24 H 1.08996 * 109.47349 * 60.00251 * 1 2 3 25 25 H 1.08998 * 109.47193 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47005 * 299.99844 * 1 2 3 27 27 H 1.09001 * 109.47051 * 239.99642 * 2 1 3 28 28 H 1.09003 * 109.46599 * 120.00133 * 2 1 3 29 29 H 1.09004 * 109.46714 * 30.00823 * 4 3 2 30 30 H 1.08998 * 109.47206 * 149.99980 * 4 3 2 31 31 H 0.97001 * 120.00124 * 179.97438 * 8 7 5 32 32 H 1.09004 * 109.47130 * 60.00325 * 15 13 3 33 33 H 1.08994 * 109.47249 * 300.00111 * 15 13 3 34 34 H 1.08996 * 109.47270 * 183.95197 * 17 16 15 35 35 H 1.08998 * 109.47472 * 303.95277 * 17 16 15 36 36 H 1.09007 * 109.47209 * 63.95555 * 17 16 15 37 37 H 1.09004 * 112.85111 * 311.20201 * 18 16 15 38 38 H 1.08997 * 113.61737 * 105.38463 * 19 18 16 39 39 H 1.09000 * 113.61138 * 334.47603 * 19 18 16 40 40 H 1.09001 * 109.47002 * 181.52532 * 21 20 19 41 41 H 1.08993 * 109.46955 * 301.52970 * 21 20 19 42 42 H 1.09000 * 109.47050 * 61.52798 * 21 20 19 43 43 H 1.08999 * 109.47105 * 298.47603 * 22 20 19 44 44 H 1.09000 * 109.46611 * 58.47476 * 22 20 19 45 45 H 1.08998 * 109.47047 * 178.47668 * 22 20 19 46 46 H 1.08998 * 113.61545 * 89.15547 * 23 20 19 47 47 H 1.08993 * 113.61303 * 220.06004 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8349 -1.7038 6 1 4.3429 1.2308 -1.0958 7 6 4.1494 2.3904 -2.8775 8 7 5.3916 2.1840 -3.2569 9 14 3.0132 3.4359 -3.9287 10 1 3.1158 4.8561 -3.5069 11 1 3.4068 3.3136 -5.3554 12 1 1.6136 2.9693 -3.7596 13 6 2.2430 2.0166 1.1671 14 8 2.6477 3.1598 1.1672 15 6 1.9913 1.3063 2.4723 16 7 2.3103 2.2061 3.5888 17 6 1.3845 3.3460 3.6271 18 6 2.3062 1.4815 4.8666 19 6 2.6330 2.3690 6.0792 20 6 3.4621 1.1912 6.6183 21 6 4.7782 1.6169 7.2723 22 6 2.6562 0.2193 7.4826 23 6 3.6193 0.7328 5.1589 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.5817 1.6877 -2.0284 30 1 2.0956 3.1410 -1.1385 31 1 5.7177 2.5745 -4.0828 32 1 2.6213 0.4186 2.5303 33 1 0.9433 1.0125 2.5299 34 1 1.6854 4.0320 4.4189 35 1 1.4072 3.8649 2.6688 36 1 0.3739 2.9870 3.8221 37 1 1.4156 0.8678 5.0024 38 1 1.7641 2.6081 6.6922 39 1 3.2308 3.2457 5.8300 40 1 5.3216 0.7322 7.6045 41 1 5.3827 2.1644 6.5492 42 1 4.5679 2.2571 8.1290 43 1 2.2707 0.7443 8.3567 44 1 1.8243 -0.1792 6.9019 45 1 3.2996 -0.5994 7.8050 46 1 4.4871 1.1615 4.6577 47 1 3.5454 -0.3470 5.0301 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459739655.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:55 Heat of formation + Delta-G solvation = -33.447003 kcal Electronic energy + Delta-G solvation = -23323.704235 eV Core-core repulsion = 20120.419749 eV Total energy + Delta-G solvation = -3203.284486 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.24382 -40.37754 -37.22314 -36.38480 -34.84110 -31.96837 -31.01050 -30.18062 -28.70883 -28.23152 -26.53231 -25.70286 -24.39947 -23.75911 -21.53686 -19.84965 -19.13168 -19.09795 -18.05707 -17.27450 -16.84021 -16.44502 -15.94826 -15.82704 -15.63393 -14.92255 -14.75670 -14.65919 -14.48868 -14.43487 -13.88185 -13.80690 -13.61795 -13.55563 -13.41124 -13.18514 -12.79496 -12.63122 -12.58987 -12.53204 -12.43008 -12.34181 -12.01846 -11.87390 -11.73793 -11.71017 -11.58720 -11.16360 -10.90096 -10.83210 -10.46762 -9.40848 -9.17674 -8.33968 -6.38702 1.31195 1.35802 1.44026 1.83925 2.23169 2.30604 3.00113 3.05371 3.53289 3.68796 3.72834 3.84814 3.94105 4.08604 4.22368 4.33475 4.38374 4.42150 4.48739 4.57817 4.60710 4.63700 4.79090 4.81950 4.83447 4.90051 4.91581 4.96898 4.98625 4.99557 5.00624 5.05880 5.12163 5.22517 5.24809 5.26051 5.37163 5.47326 5.53497 5.65677 5.68340 5.98422 6.24628 6.27779 6.62704 6.76404 7.22399 7.49759 8.83287 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022967 B = 0.003921 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.861787 B = 7138.641514 C = 7507.775076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.098 3.902 3 N -0.603 5.603 4 C 0.228 3.772 5 C -0.535 4.535 6 H 0.026 0.974 7 C 0.010 3.990 8 N -0.946 5.946 9 Si 0.949 3.051 10 H -0.277 1.277 11 H -0.274 1.274 12 H -0.238 1.238 13 C 0.498 3.502 14 O -0.576 6.576 15 C 0.054 3.946 16 N -0.538 5.538 17 C 0.029 3.971 18 C 0.055 3.945 19 C -0.117 4.117 20 C -0.082 4.082 21 C -0.134 4.134 22 C -0.124 4.124 23 C -0.123 4.123 24 H 0.046 0.954 25 H 0.094 0.906 26 H 0.058 0.942 27 H 0.072 0.928 28 H 0.093 0.907 29 H 0.047 0.953 30 H 0.015 0.985 31 H 0.268 0.732 32 H 0.109 0.891 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.053 0.947 36 H 0.035 0.965 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.062 0.938 41 H 0.042 0.958 42 H 0.063 0.937 43 H 0.066 0.934 44 H 0.060 0.940 45 H 0.064 0.936 46 H 0.065 0.935 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.607 -6.783 20.159 24.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.024 4.024 3 N -0.335 5.335 4 C 0.106 3.894 5 C -0.573 4.573 6 H 0.045 0.955 7 C -0.188 4.188 8 N -0.586 5.586 9 Si 0.771 3.229 10 H -0.203 1.203 11 H -0.199 1.199 12 H -0.161 1.161 13 C 0.287 3.713 14 O -0.456 6.456 15 C -0.076 4.076 16 N -0.263 5.263 17 C -0.119 4.119 18 C -0.053 4.053 19 C -0.155 4.155 20 C -0.082 4.082 21 C -0.191 4.191 22 C -0.181 4.181 23 C -0.161 4.161 24 H 0.065 0.935 25 H 0.113 0.887 26 H 0.077 0.923 27 H 0.090 0.910 28 H 0.111 0.889 29 H 0.065 0.935 30 H 0.034 0.966 31 H 0.077 0.923 32 H 0.127 0.873 33 H 0.104 0.896 34 H 0.092 0.908 35 H 0.072 0.928 36 H 0.054 0.946 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.061 0.939 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.079 0.921 45 H 0.083 0.917 46 H 0.084 0.916 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.817 -5.987 19.937 23.937 hybrid contribution -0.287 0.415 -1.004 1.123 sum -12.103 -5.573 18.934 23.152 Atomic orbital electron populations 1.22144 0.93955 1.03625 1.01943 1.21755 0.95603 0.81227 1.03816 1.48079 1.64505 1.15192 1.05761 1.19240 0.94652 0.92885 0.82635 1.21578 0.97130 1.31997 1.06620 0.95514 1.25864 0.96732 0.97203 0.98982 1.70057 1.17430 1.46651 1.24500 0.85704 0.80442 0.78941 0.77780 1.20297 1.19886 1.16136 1.21205 0.77092 0.86744 0.86306 1.90602 1.46779 1.20508 1.87695 1.21909 1.02091 0.95790 0.87851 1.61780 1.52710 1.09300 1.02464 1.22346 0.93209 0.93682 1.02652 1.23301 0.98095 0.96403 0.87484 1.23081 1.00128 0.96973 0.95272 1.21677 0.96275 0.96246 0.94047 1.21699 0.95753 1.01332 1.00332 1.21587 0.99361 0.98099 0.99047 1.23162 0.97062 0.99860 0.96027 0.93472 0.88679 0.92263 0.90984 0.88877 0.93498 0.96647 0.92296 0.87323 0.89637 0.90817 0.92841 0.94631 0.90035 0.90257 0.90922 0.91939 0.93851 0.91818 0.91532 0.92107 0.91746 0.91642 0.90714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.49 10.24 71.98 0.74 -2.75 16 2 C 0.10 2.90 5.93 86.38 0.51 3.41 16 3 N -0.60 -24.91 2.46 -826.13 -2.03 -26.94 16 4 C 0.23 11.40 4.23 85.63 0.36 11.76 16 5 C -0.53 -32.30 9.94 25.60 0.25 -32.05 16 6 H 0.03 1.81 8.06 -2.91 -0.02 1.78 16 7 C 0.01 0.60 5.47 84.65 0.46 1.06 16 8 N -0.95 -61.07 13.96 21.45 0.30 -60.77 16 9 Si 0.95 45.45 27.47 68.60 1.88 47.34 16 10 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 11 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 12 H -0.24 -10.23 6.54 99.48 0.65 -9.58 16 13 C 0.50 20.76 7.37 87.66 0.65 21.40 16 14 O -0.58 -29.82 13.91 -3.02 -0.04 -29.86 16 15 C 0.05 1.59 3.97 85.56 0.34 1.93 16 16 N -0.54 -15.82 4.47 -898.16 -4.01 -19.83 16 17 C 0.03 0.82 8.97 127.69 1.14 1.97 16 18 C 0.05 1.17 2.85 45.50 0.13 1.30 16 19 C -0.12 -2.24 5.76 31.12 0.18 -2.06 16 20 C -0.08 -1.39 1.39 -51.65 -0.07 -1.46 16 21 C -0.13 -2.24 9.18 71.98 0.66 -1.58 16 22 C -0.12 -1.54 9.07 71.98 0.65 -0.89 16 23 C -0.12 -2.61 6.81 31.18 0.21 -2.40 16 24 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.06 1.20 7.22 -2.39 -0.02 1.19 16 27 H 0.07 2.30 8.07 -2.39 -0.02 2.28 16 28 H 0.09 2.23 6.44 -2.39 -0.02 2.21 16 29 H 0.05 2.15 7.13 -2.38 -0.02 2.14 16 30 H 0.02 0.83 6.85 -2.39 -0.02 0.81 16 31 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16 32 H 0.11 2.92 7.17 -2.38 -0.02 2.90 16 33 H 0.09 1.97 7.16 -2.39 -0.02 1.96 16 34 H 0.07 1.91 7.05 -2.39 -0.02 1.90 16 35 H 0.05 1.93 5.82 -2.39 -0.01 1.92 16 36 H 0.04 0.83 8.14 -2.38 -0.02 0.81 16 37 H 0.08 1.46 7.64 -2.39 -0.02 1.44 16 38 H 0.08 1.26 8.10 -2.39 -0.02 1.24 16 39 H 0.07 1.68 7.85 -2.39 -0.02 1.66 16 40 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.04 0.86 7.98 -2.39 -0.02 0.84 16 42 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.06 0.71 7.34 -2.39 -0.02 0.70 16 45 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.06 1.76 7.99 -2.39 -0.02 1.74 16 47 H 0.07 1.39 8.10 -2.39 -0.02 1.37 16 Total: -1.00 -77.63 365.43 3.18 -74.46 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: 0.85 Total: 15.96 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: 6.22 Total: -0.35 kcal Atomic # 7 Polarization: -101.80 SS G_CDS: -5.74 Total: -107.54 kcal Atomic # 8 Polarization: -29.82 SS G_CDS: -0.04 Total: -29.86 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 1.88 Total: 47.34 kcal Total: -77.63 3.18 -74.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459739655.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.011 kcal (2) G-P(sol) polarization free energy of solvation -77.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds