Wall clock time and date at job start Tue Mar 31 2020 05:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47032 * 2 1 4 4 C 1.52999 * 109.47281 * 119.99653 * 2 1 3 5 5 H 1.09004 * 109.50764 * 180.61941 * 4 2 1 6 6 C 1.53048 * 109.49150 * 300.67552 * 4 2 1 7 7 N 1.46958 * 109.36867 * 178.37011 * 6 4 2 8 8 C 1.46892 * 111.00112 * 176.81261 * 7 6 4 9 9 C 1.52997 * 109.47042 * 211.05685 * 8 7 6 10 10 C 1.52998 * 109.47613 * 180.91688 * 9 8 7 11 11 C 1.53006 * 109.47494 * 300.91857 * 9 8 7 12 12 C 1.53006 * 109.47182 * 60.91685 * 9 8 7 13 13 C 1.50706 * 109.47056 * 180.02562 * 12 9 8 14 14 H 1.07995 * 120.00128 * 0.02562 * 13 12 9 15 15 C 1.37871 * 119.99698 * 180.02562 * 13 12 9 16 16 N 1.31521 * 120.00122 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00070 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47369 * 60.00026 * 17 15 13 19 19 H 1.48502 * 109.47427 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47218 * 299.99909 * 17 15 13 21 21 C 1.46958 * 110.87510 * 300.68262 * 7 6 4 22 22 C 1.53048 * 109.36754 * 59.31671 * 21 7 6 23 23 N 1.46951 * 109.36594 * 301.59736 * 22 21 7 24 24 C 1.46901 * 110.99992 * 183.18774 * 23 22 21 25 25 H 1.09007 * 109.47526 * 296.38775 * 1 2 3 26 26 H 1.09000 * 109.47893 * 56.39383 * 1 2 3 27 27 H 1.09002 * 109.47190 * 176.39526 * 1 2 3 28 28 H 1.08999 * 109.47320 * 240.00204 * 2 1 3 29 29 H 1.08995 * 109.47319 * 180.02562 * 3 2 1 30 30 H 1.09007 * 109.46695 * 300.00158 * 3 2 1 31 31 H 1.09002 * 109.47366 * 59.99744 * 3 2 1 32 32 H 1.08999 * 109.49258 * 58.39799 * 6 4 2 33 33 H 1.09007 * 109.50677 * 298.34664 * 6 4 2 34 34 H 1.08994 * 109.47737 * 331.05596 * 8 7 6 35 35 H 1.09006 * 109.47453 * 91.05889 * 8 7 6 36 36 H 1.08998 * 109.47005 * 64.60298 * 10 9 8 37 37 H 1.08998 * 109.47833 * 184.60659 * 10 9 8 38 38 H 1.09004 * 109.47128 * 304.60895 * 10 9 8 39 39 H 1.08993 * 109.46861 * 70.34206 * 11 9 8 40 40 H 1.08998 * 109.47152 * 190.35048 * 11 9 8 41 41 H 1.09004 * 109.46729 * 310.34585 * 11 9 8 42 42 H 1.08996 * 109.47033 * 300.00011 * 12 9 8 43 43 H 1.09000 * 109.46875 * 60.00054 * 12 9 8 44 44 H 0.96997 * 119.99915 * 179.97438 * 16 15 13 45 45 H 1.09005 * 109.49117 * 299.34863 * 21 7 6 46 46 H 1.09003 * 109.48717 * 179.28952 * 21 7 6 47 47 H 1.09001 * 109.48549 * 181.62872 * 22 21 7 48 48 H 1.08998 * 109.50738 * 61.58149 * 22 21 7 49 49 H 1.09002 * 109.47056 * 53.70025 * 24 23 22 50 50 H 1.08999 * 109.47048 * 293.70073 * 24 23 22 51 51 H 1.08998 * 109.46843 * 173.70265 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.1300 -0.7119 1.2554 6 6 1.5163 -0.0099 2.4991 7 7 1.9754 -0.7273 3.6966 8 6 1.5557 -0.0317 4.9204 9 6 2.5909 -0.2679 6.0219 10 6 2.1425 0.4377 7.3033 11 6 2.7216 -1.7694 6.2856 12 6 3.9442 0.2916 5.5785 13 6 4.9640 0.0583 6.6633 14 1 4.6759 -0.4396 7.5772 15 6 6.2648 0.4806 6.4888 16 7 6.6158 1.0865 5.3755 17 14 7.5292 0.1908 7.8329 18 1 7.6562 -1.2667 8.0872 19 1 8.8426 0.7340 7.4026 20 1 7.0941 0.8743 9.0775 21 6 1.4970 -2.1169 3.6902 22 6 2.0208 -2.8282 2.4403 23 7 1.5616 -2.1107 1.2429 24 6 1.9813 -2.8064 0.0190 25 1 -0.3634 0.4568 0.9206 26 1 -0.3635 0.5688 -0.8559 27 1 -0.3634 -1.0256 -0.0646 28 1 1.8933 -0.5138 -0.8900 29 1 3.1299 1.4426 -0.0005 30 1 1.6765 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 0.4265 0.0048 2.4795 33 1 1.8934 1.0127 2.5209 34 1 1.4745 1.0369 4.7214 35 1 0.5879 -0.4157 5.2430 36 1 1.2197 -0.0165 7.6642 37 1 2.9176 0.3385 8.0631 38 1 1.9705 1.4938 7.0953 39 1 3.2128 -2.2458 5.4372 40 1 3.3145 -1.9300 7.1860 41 1 1.7303 -2.2020 6.4213 42 1 4.2637 -0.2111 4.6657 43 1 3.8511 1.3613 5.3907 44 1 7.5309 1.3839 5.2529 45 1 0.4071 -2.1262 3.6841 46 1 1.8604 -2.6307 4.5802 47 1 1.6434 -3.8505 2.4188 48 1 3.1105 -2.8432 2.4598 49 1 1.6523 -3.8447 0.0603 50 1 3.0676 -2.7725 -0.0637 51 1 1.5355 -2.3180 -0.8475 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488596217.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:35 Heat of formation + Delta-G solvation = -1.842355 kcal Electronic energy + Delta-G solvation = -24638.801685 eV Core-core repulsion = 21572.720773 eV Total energy + Delta-G solvation = -3066.080911 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.78824 -37.35983 -34.90427 -34.08977 -32.12785 -29.70486 -28.35259 -27.07961 -26.92428 -26.46754 -25.03043 -23.91779 -22.97924 -22.28295 -20.46607 -18.70446 -17.74156 -16.21113 -15.99607 -15.45302 -15.05047 -14.68641 -14.48328 -14.26478 -13.90423 -13.82090 -13.35307 -13.01136 -12.87612 -12.69712 -12.35886 -12.26852 -11.94869 -11.86393 -11.80551 -11.63386 -11.32265 -11.08746 -11.02141 -10.93576 -10.88816 -10.70552 -10.54834 -10.53382 -10.27656 -10.24932 -10.16611 -9.79861 -9.44478 -8.91302 -8.70315 -8.20559 -8.19562 -7.65895 -5.84723 -3.83969 3.39351 3.44076 3.46152 4.00409 4.30285 4.56645 4.81420 4.97856 5.10527 5.26123 5.34329 5.41304 5.49388 5.50550 5.51108 5.62061 5.67257 5.71777 5.72638 5.76732 5.86911 5.89722 5.93443 5.97449 6.02137 6.06574 6.13214 6.17188 6.19651 6.22422 6.30554 6.33936 6.42007 6.45835 6.46834 6.57556 6.79130 6.83948 7.10151 7.17336 7.20487 7.28874 7.42154 7.61156 7.68382 7.89454 8.11169 8.27000 8.62628 9.23237 9.77483 11.26471 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.018692 B = 0.004741 C = 0.004496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.568320 B = 5904.759531 C = 6226.366790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.089 4.089 3 C -0.150 4.150 4 C 0.092 3.908 5 H 0.052 0.948 6 C 0.063 3.937 7 N -0.524 5.524 8 C 0.071 3.929 9 C -0.056 4.056 10 C -0.129 4.129 11 C -0.124 4.124 12 C 0.046 3.954 13 C -0.507 4.507 14 H 0.054 0.946 15 C 0.056 3.944 16 N -0.896 5.896 17 Si 0.882 3.118 18 H -0.279 1.279 19 H -0.290 1.290 20 H -0.279 1.279 21 C 0.044 3.956 22 C 0.057 3.943 23 N -0.538 5.538 24 C 0.022 3.978 25 H 0.055 0.945 26 H 0.043 0.957 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.036 0.964 33 H 0.079 0.921 34 H 0.061 0.939 35 H 0.024 0.976 36 H 0.027 0.973 37 H 0.066 0.934 38 H 0.041 0.959 39 H 0.059 0.941 40 H 0.053 0.947 41 H 0.024 0.976 42 H 0.032 0.968 43 H 0.005 0.995 44 H 0.257 0.743 45 H 0.030 0.970 46 H 0.098 0.902 47 H 0.072 0.928 48 H 0.044 0.956 49 H 0.063 0.937 50 H 0.024 0.976 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.631 -4.708 -9.824 16.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.108 4.108 3 C -0.207 4.207 4 C -0.017 4.017 5 H 0.070 0.930 6 C -0.065 4.065 7 N -0.247 5.247 8 C -0.056 4.056 9 C -0.056 4.056 10 C -0.187 4.187 11 C -0.181 4.181 12 C 0.009 3.991 13 C -0.546 4.546 14 H 0.072 0.928 15 C -0.144 4.144 16 N -0.536 5.536 17 Si 0.711 3.289 18 H -0.205 1.205 19 H -0.216 1.216 20 H -0.205 1.205 21 C -0.084 4.084 22 C -0.071 4.071 23 N -0.263 5.263 24 C -0.126 4.126 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.054 0.946 33 H 0.097 0.903 34 H 0.079 0.921 35 H 0.042 0.958 36 H 0.046 0.954 37 H 0.085 0.915 38 H 0.061 0.939 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.043 0.957 42 H 0.050 0.950 43 H 0.024 0.976 44 H 0.066 0.934 45 H 0.048 0.952 46 H 0.116 0.884 47 H 0.091 0.909 48 H 0.063 0.937 49 H 0.081 0.919 50 H 0.043 0.957 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.478 -4.633 -9.904 16.591 hybrid contribution 0.888 -0.104 0.693 1.132 sum -11.590 -4.736 -9.211 15.543 Atomic orbital electron populations 1.21779 0.94821 1.02029 1.00963 1.21156 0.96543 0.95961 0.97162 1.21892 1.01393 0.95677 1.01780 1.21699 0.97815 0.87668 0.94483 0.92976 1.22293 0.97454 0.97576 0.89148 1.61977 1.59677 1.01466 1.01617 1.22240 0.95887 0.97429 0.90089 1.20590 0.97595 0.95160 0.92269 1.21775 0.99341 0.99051 0.98558 1.21879 0.98215 0.96170 1.01793 1.19002 0.88262 0.95180 0.96664 1.21314 0.94097 1.36757 1.02410 0.92824 1.24976 0.98417 0.95780 0.95269 1.69969 1.18065 1.40467 1.25144 0.86824 0.81108 0.78355 0.82645 1.20489 1.21552 1.20494 1.22596 0.97066 0.90356 0.98388 1.22167 0.98746 0.96729 0.89482 1.62192 1.59764 1.02174 1.02137 1.22379 0.98311 0.98809 0.93091 0.92622 0.93744 0.91961 0.91351 0.92428 0.92849 0.92144 0.94557 0.90321 0.92056 0.95775 0.95363 0.91464 0.93948 0.92201 0.92836 0.95705 0.94980 0.97616 0.93351 0.95224 0.88411 0.90942 0.93749 0.91865 0.95705 0.91334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 8.72 37.15 0.32 -1.16 16 2 C -0.09 -1.02 2.29 -90.62 -0.21 -1.23 16 3 C -0.15 -1.70 8.86 37.16 0.33 -1.37 16 4 C 0.09 1.28 1.77 -67.66 -0.12 1.16 16 5 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 6 C 0.06 0.97 4.06 -3.77 -0.02 0.95 16 7 N -0.52 -8.95 3.71 -234.47 -0.87 -9.82 16 8 C 0.07 1.25 4.23 -3.83 -0.02 1.24 16 9 C -0.06 -1.12 0.60 -154.50 -0.09 -1.21 16 10 C -0.13 -2.46 8.28 37.16 0.31 -2.16 16 11 C -0.12 -2.34 6.35 37.16 0.24 -2.11 16 12 C 0.05 1.17 3.87 -27.88 -0.11 1.06 16 13 C -0.51 -14.03 7.69 -34.44 -0.26 -14.30 16 14 H 0.05 1.44 5.74 -52.49 -0.30 1.14 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 16 N -0.90 -27.18 13.29 55.43 0.74 -26.45 16 17 Si 0.88 21.89 29.54 -169.99 -5.02 16.86 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 C 0.04 0.67 4.94 -3.77 -0.02 0.65 16 22 C 0.06 0.79 5.62 -3.77 -0.02 0.77 16 23 N -0.54 -7.06 4.11 -234.74 -0.97 -8.03 16 24 C 0.02 0.25 9.06 60.07 0.54 0.79 16 25 H 0.05 0.63 6.19 -51.93 -0.32 0.31 16 26 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.69 7.73 -51.93 -0.40 0.29 16 28 H 0.07 0.75 6.38 -51.93 -0.33 0.42 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.71 6.48 -51.93 -0.34 0.37 16 32 H 0.04 0.53 6.26 -51.93 -0.32 0.21 16 33 H 0.08 1.25 6.38 -51.93 -0.33 0.92 16 34 H 0.06 1.09 7.66 -51.93 -0.40 0.69 16 35 H 0.02 0.39 7.81 -51.93 -0.41 -0.01 16 36 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 1.39 6.48 -51.93 -0.34 1.05 16 38 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.06 1.18 6.34 -51.93 -0.33 0.85 16 40 H 0.05 1.07 6.96 -51.93 -0.36 0.71 16 41 H 0.02 0.40 7.51 -51.93 -0.39 0.01 16 42 H 0.03 0.90 7.63 -51.93 -0.40 0.50 16 43 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 44 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 45 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 46 H 0.10 1.51 4.11 -51.93 -0.21 1.30 16 47 H 0.07 0.87 8.11 -51.93 -0.42 0.45 16 48 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 49 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 50 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 51 H 0.07 0.68 6.38 -51.93 -0.33 0.35 16 LS Contribution 365.75 15.07 5.51 5.51 Total: -1.00 -29.42 365.75 -9.54 -38.96 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -9.71 Total: -1.63 kcal Atomic # 6 Polarization: -16.19 SS G_CDS: 0.78 Total: -15.41 kcal Atomic # 7 Polarization: -43.20 SS G_CDS: -1.10 Total: -44.30 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.42 -9.54 -38.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488596217.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.118 kcal (2) G-P(sol) polarization free energy of solvation -29.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds