Wall clock time and date at job start Tue Mar 31 2020 05:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47162 * 2 1 4 4 N 1.46903 * 109.47359 * 120.00279 * 2 1 3 5 5 C 1.48073 * 111.00114 * 194.03217 * 4 2 1 6 6 C 1.50784 * 112.87978 * 192.21748 * 5 4 2 7 7 C 1.54527 * 108.92890 * 92.73311 * 6 5 4 8 8 N 1.40090 * 111.44575 * 283.90609 * 7 6 5 9 9 C 1.46899 * 110.99539 * 188.18065 * 8 7 6 10 10 C 1.53003 * 109.47000 * 279.75930 * 9 8 7 11 11 C 1.52999 * 109.47154 * 292.43219 * 10 9 8 12 12 C 1.53008 * 109.47068 * 52.43148 * 10 9 8 13 13 C 1.53000 * 109.47048 * 172.42958 * 10 9 8 14 14 C 1.50698 * 109.47071 * 180.02562 * 13 10 9 15 15 H 1.08001 * 120.00216 * 0.02562 * 14 13 10 16 16 C 1.37881 * 119.99875 * 179.97438 * 14 13 10 17 17 N 1.31522 * 119.99847 * 179.97438 * 16 14 13 18 18 Si 1.86798 * 120.00115 * 0.02562 * 16 14 13 19 19 H 1.48495 * 109.46961 * 89.99789 * 18 16 14 20 20 H 1.48499 * 109.46850 * 210.00100 * 18 16 14 21 21 H 1.48500 * 109.46778 * 329.99783 * 18 16 14 22 22 C 1.47686 * 114.57636 * 61.47930 * 8 7 6 23 23 C 1.47747 * 110.99894 * 66.43311 * 4 2 1 24 24 H 1.08999 * 109.46919 * 64.33159 * 1 2 3 25 25 H 1.08995 * 109.46781 * 184.33309 * 1 2 3 26 26 H 1.08998 * 109.46518 * 304.33134 * 1 2 3 27 27 H 1.08997 * 109.47246 * 240.00281 * 2 1 3 28 28 H 1.09002 * 109.47254 * 185.42006 * 3 2 1 29 29 H 1.09002 * 109.47528 * 305.42304 * 3 2 1 30 30 H 1.09002 * 109.47205 * 65.42629 * 3 2 1 31 31 H 1.09003 * 108.78766 * 313.11385 * 5 4 2 32 32 H 1.09000 * 108.78951 * 71.43832 * 5 4 2 33 33 H 1.09006 * 109.62020 * 332.87400 * 6 5 4 34 34 H 1.09001 * 109.51854 * 212.53691 * 6 5 4 35 35 H 1.08992 * 109.07679 * 163.41772 * 7 6 5 36 36 H 1.09000 * 109.07212 * 44.38759 * 7 6 5 37 37 H 1.08998 * 109.47337 * 39.76205 * 9 8 7 38 38 H 1.08999 * 109.46963 * 159.76343 * 9 8 7 39 39 H 1.08992 * 109.47241 * 83.13381 * 11 10 9 40 40 H 1.09000 * 109.46660 * 203.13524 * 11 10 9 41 41 H 1.09003 * 109.46764 * 323.12643 * 11 10 9 42 42 H 1.08996 * 109.46980 * 43.21233 * 12 10 9 43 43 H 1.08997 * 109.46919 * 163.21478 * 12 10 9 44 44 H 1.09002 * 109.46518 * 283.21116 * 12 10 9 45 45 H 1.08998 * 109.47070 * 300.00080 * 13 10 9 46 46 H 1.08997 * 109.47202 * 59.99820 * 13 10 9 47 47 H 0.96995 * 119.99632 * 180.02562 * 17 16 14 48 48 H 1.09003 * 109.73754 * 38.32359 * 22 8 7 49 49 H 1.08996 * 109.73517 * 159.02199 * 22 8 7 50 50 H 1.09001 * 108.99165 * 324.31473 * 23 4 2 51 51 H 1.09001 * 108.99138 * 205.56247 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 3.4610 -0.4289 1.4131 6 6 4.0764 -1.3381 2.4467 7 6 4.6739 -2.5732 1.7358 8 7 3.6740 -3.4746 1.3482 9 6 4.2586 -4.7272 0.8509 10 6 4.7135 -4.5379 -0.5976 11 6 3.4898 -4.3434 -1.4952 12 6 5.6161 -3.3060 -0.6919 13 6 5.4896 -5.7749 -1.0542 14 6 5.9381 -5.5882 -2.4807 15 1 5.6945 -4.6781 -3.0088 16 6 6.6605 -6.5789 -3.1115 17 7 7.0516 -6.4162 -4.3566 18 14 7.0826 -8.1527 -2.1980 19 1 6.0033 -9.1510 -2.4071 20 1 8.3654 -8.6951 -2.7132 21 1 7.2146 -7.8628 -0.7476 22 6 2.6946 -2.9293 0.3867 23 6 1.6763 -2.1290 1.1587 24 1 -0.3633 0.4451 -0.9263 25 1 -0.3633 -1.0247 0.0776 26 1 -0.3632 0.5796 0.8487 27 1 1.8933 -0.5138 -0.8900 28 1 3.1257 1.4440 -0.0971 29 1 1.5996 1.9837 -0.8374 30 1 1.7582 1.9275 0.9346 31 1 3.9866 -0.5645 0.4678 32 1 3.5846 0.6043 1.7377 33 1 3.3114 -1.6588 3.1540 34 1 4.8655 -0.8050 2.9771 35 1 5.3631 -3.0759 2.4142 36 1 5.2203 -2.2454 0.8515 37 1 5.1150 -4.9987 1.4681 38 1 3.5119 -5.5199 0.8966 39 1 3.1774 -3.2997 -1.4625 40 1 3.7441 -4.6147 -2.5198 41 1 2.6763 -4.9775 -1.1427 42 1 6.3136 -3.3017 0.1456 43 1 6.1730 -3.3345 -1.6285 44 1 5.0045 -2.4043 -0.6602 45 1 6.3613 -5.9134 -0.4148 46 1 4.8466 -6.6525 -0.9870 47 1 7.5595 -7.1133 -4.8004 48 1 3.2026 -2.2846 -0.3306 49 1 2.1997 -3.7464 -0.1380 50 1 0.7006 -2.2472 0.6872 51 1 1.6245 -2.5103 2.1785 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000505302211.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:01 Heat of formation + Delta-G solvation = 41.420331 kcal Electronic energy + Delta-G solvation = -24885.948164 eV Core-core repulsion = 21821.743263 eV Total energy + Delta-G solvation = -3064.204900 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.61964 -37.93771 -35.12538 -32.87323 -32.05553 -31.78194 -28.28478 -28.16185 -27.60828 -26.91681 -25.07851 -24.46955 -22.15904 -21.45841 -20.41046 -19.07471 -18.21406 -16.76545 -16.53062 -15.97816 -15.55453 -14.98396 -14.80627 -14.22471 -13.94824 -13.49475 -13.39954 -13.32117 -13.00311 -12.76903 -12.60479 -12.28180 -12.27474 -12.13374 -11.75971 -11.65013 -11.41514 -11.28621 -11.18238 -10.89432 -10.83876 -10.77714 -10.65491 -10.52407 -10.39465 -10.22565 -10.19501 -9.82584 -9.76681 -9.56579 -9.04154 -8.54129 -8.16276 -7.48280 -6.04962 -4.01467 3.29281 3.37238 3.40653 3.82776 4.26488 4.44358 4.79361 4.89972 4.94529 5.06402 5.20505 5.27688 5.28607 5.35791 5.45186 5.47310 5.53242 5.55341 5.64067 5.65046 5.70579 5.76892 5.78783 5.83100 5.92569 5.96842 6.02926 6.08656 6.09918 6.14096 6.15687 6.24459 6.26691 6.31442 6.39996 6.42964 6.56994 6.57889 6.85805 7.06073 7.13011 7.17015 7.20873 7.24554 7.39462 7.48931 7.74995 7.80102 8.53595 8.99495 9.58107 11.08032 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.026378 B = 0.004328 C = 0.004122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.219524 B = 6468.659430 C = 6791.739177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.075 3.925 3 C -0.148 4.148 4 N -0.542 5.542 5 C 0.061 3.939 6 C -0.121 4.121 7 C 0.037 3.963 8 N -0.545 5.545 9 C 0.065 3.935 10 C -0.079 4.079 11 C -0.153 4.153 12 C -0.138 4.138 13 C -0.001 4.001 14 C -0.510 4.510 15 H 0.076 0.924 16 C 0.065 3.935 17 N -0.905 5.905 18 Si 0.877 3.123 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.266 1.266 22 C 0.019 3.981 23 C 0.050 3.950 24 H 0.055 0.945 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.039 0.961 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.030 0.970 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.052 0.948 40 H 0.072 0.928 41 H 0.043 0.957 42 H 0.045 0.955 43 H 0.073 0.927 44 H 0.039 0.961 45 H 0.013 0.987 46 H 0.011 0.989 47 H 0.262 0.738 48 H 0.051 0.949 49 H 0.097 0.903 50 H 0.070 0.930 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.289 12.201 11.868 19.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.033 4.033 3 C -0.205 4.205 4 N -0.268 5.268 5 C -0.066 4.066 6 C -0.160 4.160 7 C -0.092 4.092 8 N -0.267 5.267 9 C -0.062 4.062 10 C -0.080 4.080 11 C -0.209 4.209 12 C -0.195 4.195 13 C -0.039 4.039 14 C -0.548 4.548 15 H 0.094 0.906 16 C -0.135 4.135 17 N -0.544 5.544 18 Si 0.704 3.296 19 H -0.204 1.204 20 H -0.215 1.215 21 H -0.191 1.191 22 C -0.109 4.109 23 C -0.077 4.077 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.057 0.943 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.049 0.951 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.071 0.929 40 H 0.090 0.910 41 H 0.062 0.938 42 H 0.064 0.936 43 H 0.092 0.908 44 H 0.057 0.943 45 H 0.032 0.968 46 H 0.029 0.971 47 H 0.072 0.928 48 H 0.069 0.931 49 H 0.115 0.885 50 H 0.088 0.912 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.660 12.231 12.531 20.500 hybrid contribution 1.278 -1.153 -1.056 2.019 sum -9.383 11.078 11.475 18.505 Atomic orbital electron populations 1.21870 0.94497 1.02098 1.01548 1.21579 0.95585 0.94606 0.91520 1.21932 1.00944 0.95623 1.02046 1.62211 1.15797 1.11166 1.37628 1.21847 0.87284 0.99431 0.97995 1.21609 1.00313 0.95792 0.98247 1.21795 0.93931 0.93544 0.99956 1.59340 1.18664 1.06238 1.42497 1.22409 0.98394 0.90796 0.94634 1.21011 0.95731 0.97503 0.93787 1.22624 0.96370 0.99966 1.01973 1.22233 0.98913 0.95639 1.02684 1.19577 0.94593 0.92447 0.97296 1.21120 1.33654 1.04305 0.95723 0.90606 1.25022 0.95545 0.98289 0.94677 1.69913 1.38734 1.34319 1.11471 0.86830 0.77860 0.84117 0.80761 1.20409 1.21548 1.19102 1.23262 0.94462 0.99402 0.93784 1.22202 0.97730 0.85890 1.01912 0.92593 0.92376 0.92109 0.94279 0.92719 0.92415 0.91909 0.95128 0.91398 0.90372 0.91302 0.91713 0.92450 0.91657 0.91359 0.92927 0.90963 0.93814 0.93643 0.90794 0.94277 0.96823 0.97102 0.92842 0.93119 0.88549 0.91165 0.89843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.25 37.16 0.34 -0.98 16 2 C 0.08 0.80 2.60 -67.71 -0.18 0.63 16 3 C -0.15 -1.39 8.29 37.16 0.31 -1.08 16 4 N -0.54 -6.23 4.62 -227.67 -1.05 -7.28 16 5 C 0.06 0.71 3.79 -4.29 -0.02 0.69 16 6 C -0.12 -1.40 5.68 -27.04 -0.15 -1.55 16 7 C 0.04 0.49 4.08 -6.54 -0.03 0.47 16 8 N -0.54 -7.72 4.15 -239.69 -1.00 -8.71 16 9 C 0.06 1.05 4.74 -3.82 -0.02 1.03 16 10 C -0.08 -1.47 0.53 -154.50 -0.08 -1.55 16 11 C -0.15 -2.76 6.89 37.16 0.26 -2.50 16 12 C -0.14 -2.53 6.64 37.16 0.25 -2.28 16 13 C 0.00 -0.03 3.11 -27.88 -0.09 -0.11 16 14 C -0.51 -13.89 7.63 -34.44 -0.26 -14.15 16 15 H 0.08 2.22 6.31 -52.49 -0.33 1.89 16 16 C 0.07 1.87 5.47 -17.81 -0.10 1.77 16 17 N -0.91 -27.55 13.96 55.43 0.77 -26.78 16 18 Si 0.88 21.62 27.47 -169.99 -4.67 16.95 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 22 C 0.02 0.25 2.94 -4.51 -0.01 0.24 16 23 C 0.05 0.60 5.10 -4.47 -0.02 0.58 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.54 6.11 -51.93 -0.32 0.23 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.04 0.47 7.61 -51.93 -0.40 0.08 16 28 H 0.05 0.53 6.85 -51.93 -0.36 0.17 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.03 0.40 6.25 -51.93 -0.32 0.07 16 32 H 0.07 0.72 7.07 -51.93 -0.37 0.36 16 33 H 0.08 0.96 7.19 -51.93 -0.37 0.59 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.87 7.73 -51.93 -0.40 0.47 16 36 H 0.06 0.84 2.99 -51.93 -0.16 0.68 16 37 H 0.06 1.07 7.65 -51.93 -0.40 0.67 16 38 H 0.07 1.10 7.95 -51.93 -0.41 0.68 16 39 H 0.05 0.86 4.36 -51.93 -0.23 0.63 16 40 H 0.07 1.54 6.24 -51.93 -0.32 1.21 16 41 H 0.04 0.73 6.69 -51.93 -0.35 0.38 16 42 H 0.04 0.79 6.71 -51.93 -0.35 0.44 16 43 H 0.07 1.58 6.25 -51.93 -0.32 1.26 16 44 H 0.04 0.65 4.48 -51.93 -0.23 0.42 16 45 H 0.01 0.32 7.20 -51.93 -0.37 -0.05 16 46 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 47 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 48 H 0.05 0.76 3.01 -51.93 -0.16 0.60 16 49 H 0.10 1.36 4.76 -51.93 -0.25 1.11 16 50 H 0.07 0.78 5.78 -51.93 -0.30 0.48 16 51 H 0.08 1.07 7.19 -51.93 -0.37 0.69 16 LS Contribution 340.65 15.07 5.13 5.13 Total: -1.00 -28.44 340.65 -9.37 -37.81 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -8.76 Total: 1.68 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: 0.20 Total: -18.81 kcal Atomic # 7 Polarization: -41.50 SS G_CDS: -1.27 Total: -42.78 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.95 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -28.44 -9.37 -37.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000505302211.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.233 kcal (2) G-P(sol) polarization free energy of solvation -28.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds