Wall clock time and date at job start Tue Mar 31 2020 05:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.47445 * 2 1 4 4 C 1.46496 * 119.99738 * 270.00231 * 3 2 1 5 5 C 1.50700 * 109.47086 * 269.99351 * 4 3 2 6 6 H 1.08002 * 119.99895 * 0.02562 * 5 4 3 7 7 C 1.37881 * 120.00201 * 180.02562 * 5 4 3 8 8 N 1.31512 * 119.99677 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00169 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47177 * 59.99752 * 9 7 5 11 11 H 1.48497 * 109.47375 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47070 * 299.99888 * 9 7 5 13 13 C 1.34778 * 120.00045 * 89.99592 * 3 2 1 14 14 O 1.21283 * 119.99670 * 180.02562 * 13 3 2 15 15 C 1.50698 * 120.00106 * 0.02562 * 13 3 2 16 16 N 1.46898 * 109.46938 * 179.97438 * 15 13 3 17 17 C 1.46908 * 110.99755 * 189.99472 * 16 15 13 18 18 C 1.53004 * 109.46804 * 71.70968 * 17 16 15 19 19 C 1.52995 * 117.49933 * 245.03874 * 18 17 16 20 20 C 1.52996 * 117.49994 * 176.41539 * 18 17 16 21 21 C 1.46897 * 111.00184 * 66.04915 * 16 15 13 22 22 C 1.53001 * 109.47259 * 194.12176 * 21 16 15 23 23 C 1.52998 * 109.47785 * 74.11728 * 21 16 15 24 24 H 1.09004 * 109.47025 * 300.00350 * 1 2 3 25 25 H 1.09002 * 109.46971 * 59.99623 * 1 2 3 26 26 H 1.08995 * 109.47254 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47025 * 239.99650 * 2 1 3 28 28 H 1.09003 * 109.47331 * 119.99976 * 2 1 3 29 29 H 1.08998 * 109.47419 * 30.00095 * 4 3 2 30 30 H 1.09006 * 109.47184 * 149.99829 * 4 3 2 31 31 H 0.97004 * 119.99881 * 180.02562 * 8 7 5 32 32 H 1.08999 * 109.46967 * 59.99529 * 15 13 3 33 33 H 1.09002 * 109.46931 * 299.99822 * 15 13 3 34 34 H 1.08996 * 109.47052 * 191.70390 * 17 16 15 35 35 H 1.08999 * 109.47230 * 311.70970 * 17 16 15 36 36 H 1.08998 * 115.55094 * 30.74068 * 18 17 16 37 37 H 1.09011 * 117.49894 * 359.97438 * 19 18 17 38 38 H 1.08996 * 117.50594 * 145.01978 * 19 18 17 39 39 H 1.09000 * 117.50050 * 214.98335 * 20 18 17 40 40 H 1.09004 * 117.49586 * 359.97438 * 20 18 17 41 41 H 1.09002 * 109.46979 * 314.11558 * 21 16 15 42 42 H 1.09004 * 109.47360 * 63.30854 * 22 21 16 43 43 H 1.08991 * 109.47370 * 183.31433 * 22 21 16 44 44 H 1.09005 * 109.47061 * 303.31286 * 22 21 16 45 45 H 1.09002 * 109.47001 * 59.99843 * 23 21 16 46 46 H 1.09003 * 109.47275 * 180.02562 * 23 21 16 47 47 H 1.08999 * 109.46941 * 300.00093 * 23 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0717 -1.2687 5 6 3.6858 1.8349 -1.7037 6 1 4.3427 1.2302 -1.0961 7 6 4.1495 2.3904 -2.8775 8 7 3.3497 3.1272 -3.6171 9 14 5.9135 2.0963 -3.4170 10 1 6.1403 0.6396 -3.5953 11 1 6.1614 2.7974 -4.7024 12 1 6.8413 2.6186 -2.3819 13 6 2.2430 2.0165 1.1672 14 8 2.6469 3.1601 1.1671 15 6 1.9923 1.3060 2.4723 16 7 2.3109 2.2059 3.5888 17 6 2.3076 1.4811 4.8666 18 6 3.5328 0.5673 4.9377 19 6 3.2870 -0.9424 4.9721 20 6 3.7565 -0.2148 6.2335 21 6 1.3845 3.3453 3.6276 22 6 1.9427 4.4251 4.5567 23 6 0.0235 2.8786 4.1479 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.5817 1.6877 -2.0284 30 1 2.0956 3.1410 -1.1384 31 1 3.6758 3.5177 -4.4430 32 1 2.6227 0.4187 2.5299 33 1 0.9444 1.0116 2.5302 34 1 2.3388 2.1952 5.6895 35 1 1.4013 0.8801 4.9411 36 1 4.4152 0.9218 4.4051 37 1 2.2525 -1.2847 4.9446 38 1 4.0077 -1.5814 4.4621 39 1 4.7862 -0.3750 6.5533 40 1 3.0311 -0.0780 7.0355 41 1 1.2690 3.7540 2.6237 42 1 2.8841 4.7994 4.1545 43 1 1.2282 5.2447 4.6317 44 1 2.1136 4.0004 5.5460 45 1 0.1390 2.4698 5.1518 46 1 -0.6641 3.7240 4.1763 47 1 -0.3742 2.1093 3.4860 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000533034762.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:54 Heat of formation + Delta-G solvation = -7.373958 kcal Electronic energy + Delta-G solvation = -23723.817690 eV Core-core repulsion = 20521.663816 eV Total energy + Delta-G solvation = -3202.153874 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.69592 -38.08868 -36.47757 -35.08938 -32.79323 -31.67953 -30.06127 -28.61484 -27.10286 -26.73626 -24.73208 -22.97153 -22.53645 -22.22979 -20.86908 -19.56568 -18.14830 -16.57062 -16.29015 -16.09233 -15.66492 -15.20210 -14.85657 -14.43780 -14.14007 -13.90857 -13.43660 -13.32248 -13.22039 -13.06840 -12.71575 -12.38258 -11.96445 -11.94949 -11.84467 -11.61656 -11.56986 -11.42368 -11.27853 -11.14330 -10.98265 -10.88234 -10.67535 -10.54258 -10.46347 -10.26346 -10.07437 -9.90663 -9.57185 -8.73807 -8.38435 -8.04303 -7.56492 -5.99446 -4.03630 3.35194 3.39534 3.42262 3.54218 3.63620 3.81498 4.21585 4.49748 4.72902 4.84449 4.93904 5.05669 5.15882 5.20513 5.29701 5.33208 5.35358 5.42636 5.49504 5.51525 5.54713 5.66123 5.67929 5.73607 5.77620 5.81102 5.83764 5.89328 5.95731 6.01404 6.05791 6.06998 6.24676 6.26316 6.41296 6.49685 6.51128 7.06072 7.26595 7.32812 7.50699 7.63391 7.97799 8.29674 8.52062 8.96772 9.22175 9.61458 11.08556 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.015905 B = 0.004743 C = 0.004563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.084937 B = 5902.393975 C = 6134.686580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.107 3.893 3 N -0.600 5.600 4 C 0.249 3.751 5 C -0.524 4.524 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.276 1.276 13 C 0.506 3.494 14 O -0.524 6.524 15 C 0.037 3.963 16 N -0.510 5.510 17 C 0.085 3.915 18 C -0.144 4.144 19 C -0.185 4.185 20 C -0.180 4.180 21 C 0.070 3.930 22 C -0.136 4.136 23 C -0.186 4.186 24 H 0.048 0.952 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.081 0.919 28 H 0.062 0.938 29 H 0.030 0.970 30 H 0.042 0.958 31 H 0.263 0.737 32 H 0.097 0.903 33 H 0.054 0.946 34 H 0.081 0.919 35 H 0.035 0.965 36 H 0.114 0.886 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.103 0.897 42 H 0.066 0.934 43 H 0.053 0.947 44 H 0.048 0.952 45 H 0.054 0.946 46 H 0.059 0.941 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.236 -7.200 17.273 19.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.333 5.333 4 C 0.129 3.871 5 C -0.563 4.563 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.292 3.708 14 O -0.400 6.400 15 C -0.094 4.094 16 N -0.233 5.233 17 C -0.043 4.043 18 C -0.163 4.163 19 C -0.222 4.222 20 C -0.217 4.217 21 C -0.038 4.038 22 C -0.193 4.193 23 C -0.244 4.244 24 H 0.067 0.933 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.100 0.900 28 H 0.081 0.919 29 H 0.048 0.952 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.115 0.885 33 H 0.072 0.928 34 H 0.099 0.901 35 H 0.053 0.947 36 H 0.132 0.868 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.109 0.891 41 H 0.121 0.879 42 H 0.085 0.915 43 H 0.072 0.928 44 H 0.067 0.933 45 H 0.073 0.927 46 H 0.079 0.921 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.550 -6.275 16.992 18.945 hybrid contribution 0.140 -0.697 -0.309 0.775 sum -5.410 -6.972 16.683 18.873 Atomic orbital electron populations 1.22221 0.97008 1.01277 1.02163 1.21382 0.93320 0.84487 1.02539 1.48258 1.64188 1.13164 1.07733 1.19217 0.96126 0.93565 0.78155 1.21410 0.96970 1.31729 1.06142 0.92569 1.24922 0.97747 0.94966 0.96429 1.69924 1.35704 1.33523 1.14394 0.86578 0.84984 0.78186 0.77785 1.20313 1.21232 1.20183 1.20176 0.78713 0.87138 0.84751 1.90641 1.44655 1.17878 1.86809 1.22080 1.00196 0.96372 0.90797 1.61784 1.51540 1.08470 1.01503 1.21708 0.94654 0.95553 0.92403 1.22384 1.00919 0.92170 1.00833 1.23054 1.02116 0.95232 1.01840 1.22909 1.02168 1.05054 0.91587 1.21873 0.88518 0.91389 1.02012 1.21753 1.01711 0.97468 0.98399 1.22526 0.99188 1.01774 1.00956 0.93336 0.92032 0.92269 0.90021 0.91935 0.95220 0.94010 0.92751 0.88484 0.92787 0.90122 0.94735 0.86794 0.89112 0.88867 0.88903 0.89130 0.87872 0.91538 0.92764 0.93305 0.92726 0.92145 0.92998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 10.24 37.16 0.38 -1.89 16 2 C 0.11 1.73 5.93 -4.04 -0.02 1.71 16 3 N -0.60 -12.74 2.46 -175.06 -0.43 -13.17 16 4 C 0.25 6.54 5.16 -5.20 -0.03 6.52 16 5 C -0.52 -15.02 9.39 -34.44 -0.32 -15.34 16 6 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.90 -26.90 13.29 55.43 0.74 -26.16 16 9 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 13 C 0.51 10.61 7.26 -10.99 -0.08 10.53 16 14 O -0.52 -13.20 14.03 5.56 0.08 -13.12 16 15 C 0.04 0.57 3.76 -4.98 -0.02 0.55 16 16 N -0.51 -7.61 4.12 -228.08 -0.94 -8.55 16 17 C 0.08 0.99 3.85 -3.82 -0.01 0.97 16 18 C -0.14 -1.63 4.98 -90.62 -0.45 -2.08 16 19 C -0.19 -1.80 10.12 -26.74 -0.27 -2.07 16 20 C -0.18 -1.65 10.25 -26.73 -0.27 -1.92 16 21 C 0.07 1.02 2.49 -67.71 -0.17 0.85 16 22 C -0.14 -1.76 9.28 37.16 0.34 -1.42 16 23 C -0.19 -2.17 8.43 37.16 0.31 -1.85 16 24 H 0.05 0.63 7.22 -51.93 -0.38 0.25 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 28 H 0.06 0.85 6.44 -51.93 -0.33 0.52 16 29 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 30 H 0.04 1.24 7.42 -51.93 -0.39 0.86 16 31 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.10 1.42 6.46 -51.93 -0.34 1.09 16 33 H 0.05 0.75 5.67 -51.93 -0.29 0.46 16 34 H 0.08 0.89 6.10 -51.93 -0.32 0.58 16 35 H 0.03 0.38 6.88 -51.93 -0.36 0.02 16 36 H 0.11 1.52 8.14 -51.93 -0.42 1.09 16 37 H 0.09 0.82 8.04 -51.92 -0.42 0.40 16 38 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.10 1.88 5.79 -51.93 -0.30 1.58 16 42 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.05 0.55 6.36 -51.93 -0.33 0.22 16 45 H 0.05 0.56 6.63 -51.93 -0.34 0.22 16 46 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.05 0.62 6.76 -51.93 -0.35 0.27 16 LS Contribution 366.66 15.07 5.53 5.53 Total: -1.00 -32.22 366.66 -9.09 -41.32 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -8.33 Total: 0.78 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: -0.71 Total: -3.79 kcal Atomic # 7 Polarization: -47.25 SS G_CDS: -0.63 Total: -47.88 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: 0.08 Total: -13.12 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.22 -9.09 -41.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000533034762.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.943 kcal (2) G-P(sol) polarization free energy of solvation -32.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds