Wall clock time and date at job start Tue Mar 31 2020 05:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46901 * 111.00099 * 2 1 4 4 C 1.53004 * 109.47034 * 293.95512 * 3 2 1 5 5 C 1.50699 * 109.46972 * 179.97438 * 4 3 2 6 6 O 1.21281 * 120.00380 * 359.97438 * 5 4 3 7 7 N 1.34775 * 119.99902 * 179.97438 * 5 4 3 8 8 C 1.46502 * 119.99973 * 179.97438 * 7 5 4 9 9 C 1.53004 * 109.47044 * 180.02562 * 8 7 5 10 10 C 1.50699 * 109.46972 * 180.02562 * 9 8 7 11 11 H 1.07996 * 120.00419 * 359.97438 * 10 9 8 12 12 C 1.37883 * 120.00057 * 180.02562 * 10 9 8 13 13 N 1.31510 * 119.99881 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 120.00154 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47410 * 359.97438 * 14 12 10 16 16 H 1.48495 * 109.47421 * 120.00034 * 14 12 10 17 17 H 1.48500 * 109.47341 * 239.99852 * 14 12 10 18 18 C 1.46896 * 111.00236 * 123.95512 * 2 1 3 19 19 C 1.52997 * 109.46848 * 306.04597 * 18 2 1 20 20 C 1.52999 * 109.47317 * 179.97438 * 19 18 2 21 21 C 1.53005 * 109.47159 * 300.00546 * 20 19 18 22 22 C 1.52997 * 109.47452 * 59.99536 * 21 20 19 23 23 C 1.53000 * 109.47053 * 66.04311 * 18 2 1 24 24 H 1.08994 * 109.47338 * 296.04783 * 1 2 3 25 25 H 1.08998 * 109.46955 * 56.04897 * 1 2 3 26 26 H 1.09002 * 109.47088 * 176.04150 * 1 2 3 27 27 H 1.09003 * 109.46826 * 53.95172 * 3 2 1 28 28 H 1.08998 * 109.47297 * 173.95374 * 3 2 1 29 29 H 1.09003 * 109.47036 * 299.99531 * 4 3 2 30 30 H 1.08998 * 109.47192 * 59.99797 * 4 3 2 31 31 H 0.97002 * 120.00439 * 0.02562 * 7 5 4 32 32 H 1.09003 * 109.46958 * 299.99780 * 8 7 5 33 33 H 1.08998 * 109.47155 * 59.99976 * 8 7 5 34 34 H 1.09003 * 109.47036 * 299.99698 * 9 8 7 35 35 H 1.08998 * 109.47192 * 59.99965 * 9 8 7 36 36 H 0.96998 * 120.00155 * 179.97438 * 13 12 10 37 37 H 1.09002 * 109.47220 * 186.04666 * 18 2 1 38 38 H 1.08996 * 109.47853 * 300.00000 * 19 18 2 39 39 H 1.09002 * 109.47153 * 60.00028 * 19 18 2 40 40 H 1.09000 * 109.47486 * 180.02562 * 20 19 18 41 41 H 1.09002 * 109.46716 * 60.00091 * 20 19 18 42 42 H 1.09002 * 109.46935 * 299.99411 * 21 20 19 43 43 H 1.09001 * 109.46812 * 179.97438 * 21 20 19 44 44 H 1.08993 * 109.47194 * 179.97438 * 22 21 20 45 45 H 1.09002 * 109.46695 * 59.99734 * 22 21 20 46 46 H 1.08992 * 109.47399 * 300.00238 * 23 18 2 47 47 H 1.09004 * 109.46724 * 60.00724 * 23 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0574 -1.3183 5 6 2.1710 3.4645 -1.3180 6 8 2.7857 3.8782 -0.3578 7 7 1.9704 4.2634 -2.3848 8 6 2.4944 5.6314 -2.3844 9 6 2.1305 6.3174 -3.7027 10 6 2.6701 7.7245 -3.7024 11 1 3.2174 8.0928 -2.8474 12 6 2.4641 8.5421 -4.7935 13 7 1.7972 8.0938 -5.8345 14 14 3.1323 10.2864 -4.7929 15 1 3.8396 10.5452 -3.5130 16 1 4.0788 10.4543 -5.9247 17 1 2.0093 11.2468 -4.9402 18 6 1.9955 -0.7660 1.1375 19 6 1.3858 -0.2343 2.4362 20 6 1.9336 -1.0325 3.6210 21 6 1.5692 -2.5090 3.4534 22 6 2.1789 -3.0407 2.1547 23 6 1.6314 -2.2426 0.9703 24 1 -0.3634 0.4512 0.9232 25 1 -0.3633 0.5739 -0.8525 26 1 -0.3633 -1.0252 -0.0709 27 1 1.5610 1.9273 0.8309 28 1 3.0797 1.3444 0.1082 29 1 2.0658 1.5015 -2.1492 30 1 0.5472 2.0845 -1.4265 31 1 1.4784 3.9328 -3.1527 32 1 2.0589 6.1870 -1.5538 33 1 3.5786 5.6052 -2.2752 34 1 2.5657 5.7620 -4.5335 35 1 1.0463 6.3437 -3.8114 36 1 1.6519 8.6690 -6.6018 37 1 3.0798 -0.6611 1.1755 38 1 1.6450 0.8176 2.5554 39 1 0.3015 -0.3393 2.3982 40 1 1.4989 -0.6541 4.5461 41 1 3.0179 -0.9279 3.6592 42 1 0.4849 -2.6136 3.4152 43 1 1.9599 -3.0777 4.2973 44 1 1.9197 -4.0926 2.0356 45 1 3.2632 -2.9360 2.1930 46 1 0.5472 -2.3475 0.9323 47 1 2.0659 -2.6213 0.0451 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000547736467.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:17 Heat of formation + Delta-G solvation = -69.098401 kcal Electronic energy + Delta-G solvation = -22047.853346 eV Core-core repulsion = 18843.022899 eV Total energy + Delta-G solvation = -3204.830447 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.93292 -39.06332 -36.21173 -34.82587 -32.84749 -31.71235 -31.05263 -29.68526 -28.81748 -26.63424 -24.77858 -23.29969 -22.58518 -21.16229 -20.77659 -19.83104 -19.57482 -17.11203 -16.41412 -16.04945 -15.69656 -15.22551 -15.06373 -14.73971 -14.53462 -14.42905 -14.37303 -14.05854 -13.43181 -13.25428 -12.70798 -12.58052 -12.51277 -12.40847 -12.30627 -11.92421 -11.72624 -11.35671 -11.28966 -11.19425 -11.05950 -10.98364 -10.79654 -10.62692 -10.55297 -10.35204 -10.32987 -9.78818 -9.44570 -9.15899 -8.53858 -8.41022 -8.34263 -6.09743 -4.12431 3.04285 3.28057 3.35438 3.39928 3.46914 4.01100 4.38208 4.42359 4.46658 4.65125 4.80056 4.88537 4.94385 5.05750 5.10980 5.14983 5.21135 5.27323 5.29177 5.30189 5.33968 5.40969 5.43666 5.57979 5.73335 5.74598 5.80391 5.82289 5.83960 5.88558 5.94104 5.98462 6.09839 6.13214 6.35483 6.36030 6.74603 6.90487 6.92211 6.94643 7.52086 7.61886 7.88752 8.04150 8.27963 8.68317 8.93935 9.52406 11.01897 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.051055 B = 0.002268 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.297114 B =12340.396525 C =12633.710941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.538 5.538 3 C 0.071 3.929 4 C -0.138 4.138 5 C 0.505 3.495 6 O -0.555 6.555 7 N -0.723 5.723 8 C 0.121 3.879 9 C 0.012 3.988 10 C -0.521 4.521 11 H 0.060 0.940 12 C 0.058 3.942 13 N -0.894 5.894 14 Si 0.897 3.103 15 H -0.271 1.271 16 H -0.283 1.283 17 H -0.283 1.283 18 C 0.086 3.914 19 C -0.155 4.155 20 C -0.115 4.115 21 C -0.120 4.120 22 C -0.119 4.119 23 C -0.109 4.109 24 H 0.031 0.969 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.044 0.956 28 H 0.081 0.919 29 H 0.099 0.901 30 H 0.090 0.910 31 H 0.398 0.602 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.022 0.978 35 H 0.022 0.978 36 H 0.261 0.739 37 H 0.081 0.919 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.062 0.938 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.288 -23.010 14.180 27.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.260 5.260 3 C -0.057 4.057 4 C -0.179 4.179 5 C 0.291 3.709 6 O -0.434 6.434 7 N -0.373 5.373 8 C -0.001 4.001 9 C -0.025 4.025 10 C -0.560 4.560 11 H 0.078 0.922 12 C -0.144 4.144 13 N -0.533 5.533 14 Si 0.725 3.275 15 H -0.196 1.196 16 H -0.209 1.209 17 H -0.209 1.209 18 C -0.022 4.022 19 C -0.194 4.194 20 C -0.153 4.153 21 C -0.158 4.158 22 C -0.157 4.157 23 C -0.147 4.147 24 H 0.049 0.951 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.062 0.938 28 H 0.099 0.901 29 H 0.117 0.883 30 H 0.108 0.892 31 H 0.231 0.769 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.041 0.959 35 H 0.040 0.960 36 H 0.071 0.929 37 H 0.100 0.900 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.078 0.922 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.080 0.920 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.743 -22.855 14.237 27.066 hybrid contribution -0.279 1.309 0.170 1.349 sum -3.022 -21.546 14.407 26.095 Atomic orbital electron populations 1.22534 0.88002 1.02137 1.00853 1.62206 1.07830 1.13855 1.42131 1.21799 1.00890 0.87126 0.95845 1.21642 1.02549 0.93316 1.00368 1.20560 0.80139 0.87332 0.82900 1.90666 1.41964 1.76211 1.34602 1.46348 1.56782 1.15382 1.18767 1.21707 0.97989 0.79158 1.01256 1.19329 0.97431 0.95426 0.90358 1.21098 1.35384 0.97140 1.02332 0.92216 1.25008 0.95131 0.98807 0.95438 1.69963 1.40689 1.36565 1.06076 0.86454 0.78733 0.84231 0.78132 1.19593 1.20923 1.20945 1.21730 0.99544 0.93362 0.87567 1.22250 1.01138 1.00093 0.95920 1.21465 1.01051 0.95039 0.97786 1.21552 1.00708 0.95944 0.97560 1.21518 1.00548 0.99103 0.94512 1.21555 1.01078 0.93756 0.98332 0.95091 0.91208 0.91316 0.93813 0.90085 0.88296 0.89223 0.76860 0.92692 0.92622 0.95920 0.95964 0.92901 0.90037 0.91711 0.91545 0.92169 0.91917 0.92164 0.92163 0.91918 0.91906 0.91956 0.91164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 8.58 60.06 0.52 0.63 16 2 N -0.54 -5.38 4.71 -234.89 -1.11 -6.48 16 3 C 0.07 0.85 3.82 -3.82 -0.01 0.84 16 4 C -0.14 -1.67 5.63 -27.88 -0.16 -1.82 16 5 C 0.51 8.46 7.83 -10.99 -0.09 8.37 16 6 O -0.56 -11.40 15.98 5.56 0.09 -11.31 16 7 N -0.72 -12.62 5.56 -60.29 -0.33 -12.95 16 8 C 0.12 2.61 5.61 -4.04 -0.02 2.59 16 9 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 10 C -0.52 -14.54 9.11 -34.44 -0.31 -14.86 16 11 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 12 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 13 N -0.89 -26.20 13.29 55.43 0.74 -25.46 16 14 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 15 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 C 0.09 0.77 2.19 -67.72 -0.15 0.62 16 19 C -0.16 -1.33 4.45 -26.73 -0.12 -1.45 16 20 C -0.12 -0.86 5.92 -26.73 -0.16 -1.01 16 21 C -0.12 -0.78 5.92 -26.73 -0.16 -0.94 16 22 C -0.12 -0.78 5.92 -26.75 -0.16 -0.94 16 23 C -0.11 -0.83 5.12 -26.75 -0.14 -0.96 16 24 H 0.03 0.27 6.21 -51.93 -0.32 -0.05 16 25 H 0.07 0.59 6.30 -51.93 -0.33 0.26 16 26 H 0.07 0.53 6.47 -51.93 -0.34 0.19 16 27 H 0.04 0.57 7.01 -51.93 -0.36 0.21 16 28 H 0.08 1.06 7.89 -51.93 -0.41 0.65 16 29 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.09 0.93 6.47 -51.93 -0.34 0.60 16 31 H 0.40 5.97 8.47 -40.82 -0.35 5.62 16 32 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 34 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 37 H 0.08 0.79 7.93 -51.93 -0.41 0.37 16 38 H 0.06 0.65 6.91 -51.93 -0.36 0.29 16 39 H 0.07 0.57 6.33 -51.93 -0.33 0.24 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.06 0.46 6.55 -51.93 -0.34 0.12 16 47 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 361.37 15.07 5.45 5.45 Total: -1.00 -31.02 361.37 -9.88 -40.90 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -8.50 Total: 0.65 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: -1.20 Total: -7.25 kcal Atomic # 7 Polarization: -44.19 SS G_CDS: -0.71 Total: -44.89 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.09 Total: -11.31 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.02 -9.88 -40.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547736467.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.196 kcal (2) G-P(sol) polarization free energy of solvation -31.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds