Wall clock time and date at job start Tue Mar 31 2020 05:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46903 * 110.99771 * 2 1 4 4 C 1.46897 * 111.00036 * 123.95276 * 2 1 3 5 5 C 1.53003 * 109.46740 * 66.04856 * 4 2 1 6 6 C 1.53007 * 109.46821 * 180.02562 * 5 4 2 7 7 C 1.53003 * 109.46821 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.46695 * 179.97438 * 7 6 5 9 9 O 1.21296 * 120.00535 * 353.53821 * 8 7 6 10 10 N 1.34783 * 119.99658 * 173.53466 * 8 7 6 11 11 C 1.37092 * 119.99974 * 356.29338 * 10 8 7 12 12 H 1.07993 * 119.99927 * 232.08763 * 11 10 8 13 13 C 1.38955 * 119.99932 * 52.09031 * 11 10 8 14 14 N 1.31407 * 120.00086 * 26.89776 * 13 11 10 15 15 Si 1.86801 * 119.99861 * 206.89822 * 13 11 10 16 16 H 1.48497 * 109.47125 * 59.99692 * 15 13 11 17 17 H 1.48501 * 109.47258 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47087 * 299.99736 * 15 13 11 19 19 C 1.46503 * 119.99837 * 176.01540 * 10 8 7 20 20 C 1.54259 * 110.03575 * 237.91020 * 19 10 8 21 21 C 1.54957 * 104.16212 * 217.13936 * 20 19 10 22 22 C 1.54886 * 102.77959 * 37.88552 * 21 20 19 23 23 C 1.53877 * 110.02882 * 120.69198 * 19 10 8 24 24 H 1.09006 * 109.47126 * 296.04803 * 1 2 3 25 25 H 1.09006 * 109.46823 * 56.04153 * 1 2 3 26 26 H 1.08992 * 109.47314 * 176.04469 * 1 2 3 27 27 H 1.09005 * 109.47171 * 183.95189 * 3 2 1 28 28 H 1.09001 * 109.47412 * 303.95336 * 3 2 1 29 29 H 1.09002 * 109.47431 * 63.95627 * 3 2 1 30 30 H 1.09000 * 109.47227 * 306.05117 * 4 2 1 31 31 H 1.08995 * 109.47171 * 186.04528 * 4 2 1 32 32 H 1.08992 * 109.47188 * 59.99934 * 5 4 2 33 33 H 1.09002 * 109.46861 * 299.99429 * 5 4 2 34 34 H 1.08992 * 109.47486 * 59.99881 * 6 5 4 35 35 H 1.09002 * 109.46744 * 299.99264 * 6 5 4 36 36 H 1.09000 * 109.47047 * 59.99916 * 7 6 5 37 37 H 1.08995 * 109.47021 * 299.99528 * 7 6 5 38 38 H 0.97000 * 119.99826 * 184.89277 * 14 13 11 39 39 H 1.09000 * 110.01435 * 359.30423 * 19 10 8 40 40 H 1.09003 * 110.48532 * 335.78921 * 20 19 10 41 41 H 1.08999 * 110.48971 * 98.42191 * 20 19 10 42 42 H 1.08996 * 110.72140 * 279.57080 * 21 20 19 43 43 H 1.09004 * 110.92214 * 156.29253 * 21 20 19 44 44 H 1.08998 * 110.49052 * 203.40538 * 22 21 20 45 45 H 1.09002 * 110.60168 * 80.81430 * 22 21 20 46 46 H 1.08999 * 110.02946 * 238.57062 * 23 19 10 47 47 H 1.09000 * 110.03096 * 359.97438 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 1.6314 -2.2426 0.9702 6 6 2.1792 -3.0403 2.1554 7 6 1.8147 -4.5169 1.9884 8 6 2.3548 -5.3026 3.1554 9 8 3.0689 -4.7612 3.9728 10 7 2.0441 -6.6071 3.2910 11 6 1.1764 -7.2002 2.4108 12 1 0.3252 -7.7522 2.7808 13 6 1.3923 -7.0912 1.0424 14 7 2.6104 -6.9165 0.5813 15 14 -0.0489 -7.1929 -0.1415 16 1 -1.0130 -6.1038 0.1575 17 1 0.4440 -7.0496 -1.5350 18 1 -0.7235 -8.5070 0.0116 19 6 2.6384 -7.3927 4.3754 20 6 3.4068 -8.5979 3.7952 21 6 3.1421 -9.7399 4.8086 22 6 1.6657 -9.5036 5.2131 23 6 1.5320 -7.9681 5.2769 24 1 -0.3634 0.4513 0.9233 25 1 -0.3633 0.5741 -0.8524 26 1 -0.3633 -1.0251 -0.0709 27 1 3.0828 1.3433 -0.0708 28 1 1.5898 1.9164 -0.8524 29 1 1.7044 1.8724 0.9233 30 1 1.5610 -0.3873 2.0628 31 1 3.0797 -0.6611 1.1756 32 1 2.0658 -2.6213 0.0451 33 1 0.5471 -2.3474 0.9323 34 1 1.7446 -2.6615 3.0804 35 1 3.2635 -2.9355 2.1938 36 1 2.2491 -4.8960 1.0634 37 1 0.7304 -4.6213 1.9503 38 1 2.7536 -6.7694 -0.3667 39 1 3.3116 -6.7684 4.9628 40 1 3.0162 -8.8621 2.8124 41 1 4.4728 -8.3784 3.7364 42 1 3.7990 -9.6479 5.6735 43 1 3.2619 -10.7150 4.3364 44 1 1.4620 -9.9452 6.1886 45 1 0.9917 -9.9142 4.4613 46 1 1.6689 -7.6237 6.3020 47 1 0.5530 -7.6624 4.9078 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000562177156.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:17 Heat of formation + Delta-G solvation = -50.856812 kcal Electronic energy + Delta-G solvation = -23320.418058 eV Core-core repulsion = 20116.378626 eV Total energy + Delta-G solvation = -3204.039432 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -38.94564 -37.69255 -36.67859 -34.08900 -33.67627 -31.40257 -29.07076 -27.91436 -27.60190 -26.97826 -24.95250 -24.22485 -21.67090 -20.43908 -19.96433 -19.27325 -19.19757 -16.39545 -15.74320 -15.64093 -15.26595 -15.16190 -14.67503 -14.64071 -14.39242 -14.19248 -13.48111 -13.31107 -12.63084 -12.51382 -12.40382 -12.20256 -12.03697 -11.71071 -11.64335 -11.57762 -11.22584 -11.03984 -10.91788 -10.72978 -10.53036 -10.45807 -10.44584 -10.34761 -10.31650 -10.24543 -9.95610 -9.85159 -9.61044 -8.66708 -8.34431 -8.19352 -7.27445 -6.38233 -4.16570 3.14153 3.23570 3.25100 3.98690 4.09711 4.21928 4.85435 4.85963 5.10599 5.14805 5.30679 5.36200 5.40337 5.41307 5.54119 5.59193 5.64136 5.74611 5.78656 5.85613 5.95420 6.05259 6.11554 6.22217 6.25487 6.34775 6.37072 6.44120 6.47082 6.53358 6.57179 6.58367 6.67691 6.77098 6.84957 6.96799 7.03368 7.09063 7.09569 7.16744 7.28314 7.36932 7.48476 8.05679 8.68637 8.96183 9.67175 10.10464 10.62648 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019517 B = 0.004490 C = 0.003922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.332327 B = 6234.529378 C = 7137.362454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.550 5.550 3 C 0.025 3.975 4 C 0.056 3.944 5 C -0.115 4.115 6 C -0.100 4.100 7 C -0.128 4.128 8 C 0.510 3.490 9 O -0.616 6.616 10 N -0.448 5.448 11 C -0.337 4.337 12 H 0.080 0.920 13 C 0.057 3.943 14 N -0.844 5.844 15 Si 0.892 3.108 16 H -0.270 1.270 17 H -0.283 1.283 18 H -0.273 1.273 19 C 0.131 3.869 20 C -0.120 4.120 21 C -0.123 4.123 22 C -0.116 4.116 23 C -0.126 4.126 24 H 0.023 0.977 25 H 0.063 0.937 26 H 0.074 0.926 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.022 0.978 30 H 0.032 0.968 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.053 0.947 35 H 0.062 0.938 36 H 0.108 0.892 37 H 0.075 0.925 38 H 0.270 0.730 39 H 0.076 0.924 40 H 0.092 0.908 41 H 0.049 0.951 42 H 0.055 0.945 43 H 0.056 0.944 44 H 0.051 0.949 45 H 0.064 0.936 46 H 0.051 0.949 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.219 5.658 0.216 6.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.274 5.274 3 C -0.124 4.124 4 C -0.072 4.072 5 C -0.153 4.153 6 C -0.139 4.139 7 C -0.167 4.167 8 C 0.301 3.699 9 O -0.503 6.503 10 N -0.167 5.167 11 C -0.465 4.465 12 H 0.098 0.902 13 C -0.150 4.150 14 N -0.479 5.479 15 Si 0.718 3.282 16 H -0.195 1.195 17 H -0.208 1.208 18 H -0.198 1.198 19 C 0.027 3.973 20 C -0.159 4.159 21 C -0.161 4.161 22 C -0.154 4.154 23 C -0.165 4.165 24 H 0.042 0.958 25 H 0.082 0.918 26 H 0.092 0.908 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.041 0.959 30 H 0.050 0.950 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.126 0.874 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.094 0.906 40 H 0.110 0.890 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.069 0.931 45 H 0.083 0.917 46 H 0.069 0.931 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.592 5.630 0.013 6.198 hybrid contribution -0.949 0.249 -0.084 0.985 sum -3.541 5.879 -0.071 6.863 Atomic orbital electron populations 1.22436 0.87620 1.02684 0.99967 1.62003 1.07973 1.13389 1.44006 1.22367 1.00780 0.89136 1.00079 1.22208 1.00069 0.94423 0.90500 1.21620 1.00862 0.92997 0.99773 1.21300 1.01112 0.94903 0.96541 1.21663 1.01814 0.92935 1.00307 1.20418 0.81315 0.82191 0.85999 1.90476 1.42998 1.70647 1.46187 1.43461 1.40999 1.06223 1.26041 1.19047 1.04587 1.36885 0.85942 0.90190 1.25448 0.95818 0.95673 0.98103 1.70141 1.19437 1.43042 1.15283 0.86568 0.82665 0.79312 0.79677 1.19480 1.20835 1.19771 1.21565 0.93565 0.92533 0.89610 1.22593 0.98962 0.94005 1.00303 1.22451 0.96271 0.98603 0.98763 1.22252 0.96908 0.96334 0.99889 1.22399 1.00611 0.94927 0.98566 0.95839 0.91800 0.90766 0.91426 0.91678 0.95931 0.94964 0.90810 0.91264 0.92321 0.92780 0.91973 0.87434 0.90679 0.91991 0.90614 0.88982 0.93209 0.92633 0.92472 0.93058 0.91720 0.93067 0.91149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.32 60.06 0.56 0.81 16 2 N -0.55 -7.28 5.02 -251.25 -1.26 -8.54 16 3 C 0.02 0.27 9.57 60.07 0.57 0.84 16 4 C 0.06 0.79 4.96 -3.82 -0.02 0.77 16 5 C -0.11 -1.86 5.14 -26.73 -0.14 -2.00 16 6 C -0.10 -1.93 4.53 -26.73 -0.12 -2.06 16 7 C -0.13 -2.87 3.86 -27.88 -0.11 -2.98 16 8 C 0.51 13.03 7.26 -10.98 -0.08 12.95 16 9 O -0.62 -16.93 15.34 5.54 0.09 -16.84 16 10 N -0.45 -11.03 2.37 -106.54 -0.25 -11.28 16 11 C -0.34 -8.23 6.79 -14.93 -0.10 -8.33 16 12 H 0.08 1.93 7.29 -52.49 -0.38 1.55 16 13 C 0.06 1.38 3.35 -17.47 -0.06 1.32 16 14 N -0.84 -21.49 11.58 55.50 0.64 -20.85 16 15 Si 0.89 18.82 29.63 -169.99 -5.04 13.78 16 16 H -0.27 -5.61 7.11 56.52 0.40 -5.20 16 17 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 18 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 19 C 0.13 2.93 3.29 -66.81 -0.22 2.71 16 20 C -0.12 -2.51 6.42 -25.04 -0.16 -2.67 16 21 C -0.12 -2.06 6.91 -24.70 -0.17 -2.23 16 22 C -0.12 -1.92 6.83 -25.07 -0.17 -2.09 16 23 C -0.13 -2.41 6.26 -25.61 -0.16 -2.57 16 24 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.06 0.65 8.12 -51.93 -0.42 0.23 16 26 H 0.07 0.91 6.47 -51.93 -0.34 0.57 16 27 H 0.07 0.69 8.12 -51.93 -0.42 0.27 16 28 H 0.06 0.61 8.12 -51.93 -0.42 0.19 16 29 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.03 0.45 8.12 -51.93 -0.42 0.03 16 31 H 0.07 1.04 8.06 -51.93 -0.42 0.62 16 32 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.06 0.92 6.55 -51.93 -0.34 0.58 16 34 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.06 1.27 8.03 -51.93 -0.42 0.85 16 36 H 0.11 2.57 5.46 -51.93 -0.28 2.29 16 37 H 0.07 1.66 7.75 -51.93 -0.40 1.25 16 38 H 0.27 6.57 8.32 -40.82 -0.34 6.23 16 39 H 0.08 1.80 6.95 -51.93 -0.36 1.44 16 40 H 0.09 2.17 7.02 -51.93 -0.36 1.81 16 41 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.07 1.41 6.95 -51.93 -0.36 1.05 16 LS Contribution 362.49 15.07 5.46 5.46 Total: -1.00 -27.55 362.49 -9.45 -37.00 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -8.72 Total: 6.79 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: -0.37 Total: -5.51 kcal Atomic # 7 Polarization: -39.81 SS G_CDS: -0.87 Total: -40.68 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: 0.09 Total: -16.84 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.04 Total: 13.78 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -27.55 -9.45 -37.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562177156.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.856 kcal (2) G-P(sol) polarization free energy of solvation -27.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds