Wall clock time and date at job start Tue Mar 31 2020 05:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46892 * 111.00306 * 2 1 4 4 C 1.50701 * 109.46993 * 66.04420 * 3 2 1 5 5 H 1.07994 * 120.00328 * 0.02562 * 4 3 2 6 6 C 1.37887 * 119.99865 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00027 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 119.99584 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47468 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47108 * 120.00613 * 8 6 4 11 11 H 1.48507 * 109.47091 * 240.00414 * 8 6 4 12 12 C 1.46906 * 110.99925 * 236.04735 * 2 1 3 13 13 C 1.52998 * 109.47197 * 199.76710 * 12 2 1 14 14 H 1.09003 * 109.47068 * 302.16128 * 13 12 2 15 15 O 1.42905 * 109.47031 * 62.15935 * 13 12 2 16 16 C 1.52999 * 109.47318 * 182.15693 * 13 12 2 17 17 N 1.46901 * 109.47409 * 179.97438 * 16 13 12 18 18 C 1.46893 * 111.00024 * 180.02562 * 17 16 13 19 19 C 1.50702 * 109.47178 * 180.02562 * 18 17 16 20 20 C 1.29437 * 117.96576 * 94.73173 * 19 18 17 21 21 C 1.50063 * 124.07904 * 180.23719 * 20 19 18 22 22 C 1.53018 * 110.20036 * 343.32235 * 21 20 19 23 23 C 1.53394 * 108.44012 * 49.24749 * 22 21 20 24 24 C 1.50073 * 117.95951 * 274.99859 * 19 18 17 25 25 H 1.08999 * 109.47031 * 54.96694 * 1 2 3 26 26 H 1.09002 * 109.47006 * 174.96219 * 1 2 3 27 27 H 1.08993 * 109.46940 * 294.96483 * 1 2 3 28 28 H 1.08994 * 109.47530 * 186.04788 * 3 2 1 29 29 H 1.09008 * 109.47253 * 306.04661 * 3 2 1 30 30 H 0.97000 * 119.99606 * 179.97438 * 7 6 4 31 31 H 1.09000 * 109.46958 * 319.76806 * 12 2 1 32 32 H 1.09002 * 109.47247 * 79.76447 * 12 2 1 33 33 H 0.96701 * 114.00201 * 59.99801 * 15 13 12 34 34 H 1.08995 * 109.47044 * 300.00138 * 16 13 12 35 35 H 1.09002 * 109.46836 * 59.99632 * 16 13 12 36 36 H 1.00901 * 110.99676 * 56.04861 * 17 16 13 37 37 H 1.09006 * 109.47427 * 300.00241 * 18 17 16 38 38 H 1.08997 * 109.47301 * 59.99976 * 18 17 16 39 39 H 1.08003 * 117.95738 * 0.47474 * 20 19 18 40 40 H 1.09007 * 109.48220 * 223.00080 * 21 20 19 41 41 H 1.08995 * 109.18075 * 103.45278 * 21 20 19 42 42 H 1.08999 * 109.64461 * 289.55815 * 22 21 20 43 43 H 1.09002 * 109.81599 * 169.03464 * 22 21 20 44 44 H 1.09001 * 109.64276 * 172.88435 * 23 22 21 45 45 H 1.08994 * 109.64225 * 52.24667 * 23 22 21 46 46 H 1.08998 * 109.35787 * 283.05578 * 24 19 18 47 47 H 1.09002 * 109.35642 * 42.77974 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0470 1.2984 5 1 1.0746 1.5112 2.0488 6 6 2.0278 3.3491 1.5289 7 7 2.7130 4.0015 0.6154 8 14 1.5840 4.1863 3.1387 9 1 0.8166 3.2438 3.9918 10 1 2.8259 4.5929 3.8441 11 1 0.7569 5.3880 2.8601 12 6 1.9955 -0.7660 -1.1377 13 6 3.4455 -1.1649 -0.8566 14 1 4.0400 -0.2695 -0.6748 15 8 3.4925 -2.0098 0.2950 16 6 4.0109 -1.9161 -2.0636 17 7 5.4034 -2.2986 -1.7941 18 6 5.9805 -3.0231 -2.9342 19 6 7.4060 -3.3987 -2.6212 20 6 7.6304 -4.5767 -2.1343 21 6 8.9924 -5.0903 -1.7692 22 6 10.0748 -4.2268 -2.4207 23 6 9.7564 -2.7534 -2.1363 24 6 8.4765 -2.3812 -2.8879 25 1 -0.3633 0.5899 -0.8415 26 1 -0.3633 -1.0237 -0.0902 27 1 -0.3633 0.4337 0.9316 28 1 3.0797 1.3443 -0.1083 29 1 1.5612 1.9273 -0.8310 30 1 2.9876 4.9176 0.7775 31 1 1.3932 -1.6630 -1.2815 32 1 1.9552 -0.1531 -2.0382 33 1 2.9842 -2.8273 0.2040 34 1 3.4165 -2.8115 -2.2453 35 1 3.9750 -1.2717 -2.9420 36 1 5.4714 -2.8432 -0.9473 37 1 5.4001 -3.9264 -3.1222 38 1 5.9579 -2.3862 -3.8184 39 1 6.7852 -5.2323 -1.9849 40 1 9.0966 -6.1198 -2.1119 41 1 9.1085 -5.0588 -0.6859 42 1 10.0824 -4.3989 -3.4969 43 1 11.0495 -4.4783 -2.0026 44 1 10.5792 -2.1275 -2.4817 45 1 9.6076 -2.6107 -1.0661 46 1 8.6828 -2.3457 -3.9576 47 1 8.1353 -1.4016 -2.5530 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566121336.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:25 Heat of formation + Delta-G solvation = -49.617854 kcal Electronic energy + Delta-G solvation = -22249.234086 eV Core-core repulsion = 19045.248379 eV Total energy + Delta-G solvation = -3203.985707 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.05788 -38.06185 -35.94227 -34.88518 -32.44837 -31.80522 -30.87639 -29.42950 -27.28095 -26.20378 -24.35959 -23.36027 -23.04143 -21.53243 -21.39226 -20.01708 -17.71372 -16.75188 -16.34624 -15.89975 -15.52251 -15.06161 -14.74917 -14.46595 -14.38337 -14.32075 -13.88254 -13.69447 -13.48545 -13.20046 -12.64536 -12.53074 -12.50882 -12.23013 -11.94991 -11.86784 -11.67614 -11.35271 -11.11116 -10.95920 -10.91208 -10.66165 -10.58956 -10.58226 -10.36250 -10.33259 -9.72336 -9.58928 -9.10245 -8.98497 -8.38352 -8.34815 -7.16669 -5.97224 -3.97492 2.06116 3.35217 3.42376 3.47765 4.16302 4.47756 4.51920 4.54823 4.74929 4.81255 4.93609 5.02407 5.11900 5.21955 5.31475 5.34565 5.38529 5.41165 5.45798 5.47295 5.52573 5.64031 5.66992 5.74581 5.77330 5.82391 5.83608 5.97189 6.04081 6.07001 6.10599 6.16786 6.37373 6.48731 6.58264 6.73487 6.85816 7.00242 7.32749 7.35659 7.43981 7.85208 8.09559 8.15585 8.25525 8.60435 9.09955 9.66200 11.13975 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020236 B = 0.003013 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.322274 B = 9290.111878 C =10080.064816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.532 5.532 3 C 0.192 3.808 4 C -0.503 4.503 5 H 0.063 0.937 6 C 0.053 3.947 7 N -0.899 5.899 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.286 1.286 12 C 0.026 3.974 13 C 0.117 3.883 14 H 0.111 0.889 15 O -0.541 6.541 16 C 0.029 3.971 17 N -0.677 5.677 18 C 0.089 3.911 19 C -0.107 4.107 20 C -0.159 4.159 21 C -0.087 4.087 22 C -0.120 4.120 23 C -0.121 4.121 24 C -0.081 4.081 25 H 0.011 0.989 26 H 0.041 0.959 27 H 0.072 0.928 28 H 0.032 0.968 29 H -0.011 1.011 30 H 0.260 0.740 31 H 0.058 0.942 32 H 0.032 0.968 33 H 0.358 0.642 34 H 0.026 0.974 35 H 0.078 0.922 36 H 0.349 0.651 37 H 0.029 0.971 38 H 0.075 0.925 39 H 0.098 0.902 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.066 0.934 46 H 0.068 0.932 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.536 -17.913 -9.172 22.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.256 5.256 3 C 0.067 3.933 4 C -0.541 4.541 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.539 5.539 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.212 1.212 12 C -0.104 4.104 13 C 0.057 3.943 14 H 0.129 0.871 15 O -0.343 6.343 16 C -0.101 4.101 17 N -0.309 5.309 18 C -0.039 4.039 19 C -0.107 4.107 20 C -0.178 4.178 21 C -0.124 4.124 22 C -0.158 4.158 23 C -0.158 4.158 24 C -0.118 4.118 25 H 0.029 0.971 26 H 0.060 0.940 27 H 0.091 0.909 28 H 0.050 0.950 29 H 0.006 0.994 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.051 0.949 33 H 0.203 0.797 34 H 0.045 0.955 35 H 0.096 0.904 36 H 0.168 0.832 37 H 0.047 0.953 38 H 0.093 0.907 39 H 0.116 0.884 40 H 0.086 0.914 41 H 0.090 0.910 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.085 0.915 46 H 0.087 0.913 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 10.389 -16.856 -8.741 21.644 hybrid contribution -1.414 -0.298 -0.224 1.462 sum 8.975 -17.154 -8.965 21.335 Atomic orbital electron populations 1.22191 0.88908 0.98504 1.01141 1.62039 1.06462 1.17901 1.39165 1.19797 0.95575 0.81393 0.96546 1.21188 1.34495 0.96782 1.01664 0.91881 1.24993 0.95370 0.97404 0.96969 1.69968 1.38578 1.11365 1.34035 0.86449 0.78140 0.79219 0.83658 1.19685 1.20992 1.21215 1.22676 0.95946 0.98011 0.93724 1.21983 0.95119 0.93575 0.83658 0.87093 1.86708 1.73823 1.34320 1.39478 1.22692 0.88436 0.98887 1.00041 1.60322 1.17909 1.47572 1.05133 1.21074 0.91786 0.96336 0.94754 1.20791 0.95236 0.94986 0.99716 1.21905 0.97875 0.96766 1.01254 1.20394 0.92405 0.98930 1.00697 1.21600 0.98033 0.95458 1.00696 1.21610 0.97261 0.95951 1.00988 1.20362 0.93034 0.98416 0.99983 0.97054 0.94014 0.90940 0.94989 0.99374 0.93052 0.92388 0.94947 0.79743 0.95545 0.90371 0.83206 0.95277 0.90707 0.88367 0.91446 0.90961 0.91996 0.91935 0.91791 0.91521 0.91330 0.89971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.81 9.31 60.07 0.56 1.37 16 2 N -0.53 -11.70 4.59 -244.37 -1.12 -12.82 16 3 C 0.19 5.12 4.55 -4.98 -0.02 5.10 16 4 C -0.50 -14.54 8.58 -34.44 -0.30 -14.83 16 5 H 0.06 1.82 7.10 -52.49 -0.37 1.45 16 6 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -27.28 13.29 55.43 0.74 -26.55 16 8 Si 0.90 22.19 29.54 -169.99 -5.02 17.17 16 9 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 C 0.03 0.46 4.65 -3.82 -0.02 0.44 16 13 C 0.12 1.94 3.31 -26.73 -0.09 1.85 16 14 H 0.11 2.27 6.73 -51.93 -0.35 1.92 16 15 O -0.54 -9.07 12.58 -35.23 -0.44 -9.51 16 16 C 0.03 0.38 5.39 -3.82 -0.02 0.36 16 17 N -0.68 -8.71 6.49 -115.06 -0.75 -9.46 16 18 C 0.09 0.97 5.69 -4.98 -0.03 0.94 16 19 C -0.11 -1.11 5.35 -100.94 -0.54 -1.65 16 20 C -0.16 -1.52 9.37 -35.90 -0.34 -1.85 16 21 C -0.09 -0.71 6.11 -28.18 -0.17 -0.89 16 22 C -0.12 -0.95 6.01 -26.52 -0.16 -1.11 16 23 C -0.12 -1.08 6.01 -26.51 -0.16 -1.24 16 24 C -0.08 -0.81 5.80 -28.17 -0.16 -0.97 16 25 H 0.01 0.22 8.08 -51.93 -0.42 -0.20 16 26 H 0.04 0.69 7.85 -51.93 -0.41 0.28 16 27 H 0.07 1.52 7.01 -51.93 -0.36 1.16 16 28 H 0.03 0.91 6.60 -51.93 -0.34 0.57 16 29 H -0.01 -0.33 8.07 -51.92 -0.42 -0.75 16 30 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 31 H 0.06 0.87 7.75 -51.93 -0.40 0.46 16 32 H 0.03 0.58 8.00 -51.93 -0.42 0.16 16 33 H 0.36 4.51 9.05 45.56 0.41 4.92 16 34 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.35 4.56 8.11 -39.29 -0.32 4.24 16 37 H 0.03 0.30 7.80 -51.93 -0.40 -0.11 16 38 H 0.07 0.81 8.11 -51.93 -0.42 0.39 16 39 H 0.10 0.89 7.74 -52.48 -0.41 0.49 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.48 8.12 -51.93 -0.42 0.06 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 46 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 371.10 15.07 5.59 5.59 Total: -1.00 -31.51 371.10 -10.54 -42.05 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -7.99 Total: 4.53 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: -1.54 Total: -11.01 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: -1.13 Total: -48.83 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: -0.44 Total: -9.51 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.51 -10.54 -42.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566121336.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.567 kcal (2) G-P(sol) polarization free energy of solvation -31.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds