Wall clock time and date at job start Tue Mar 31 2020 05:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46902 * 110.99305 * 2 1 4 4 C 1.50702 * 109.47206 * 293.94981 * 3 2 1 5 5 H 1.07990 * 119.99891 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99588 * 179.97438 * 4 3 2 7 7 N 1.31519 * 119.99568 * 179.97438 * 6 4 3 8 8 Si 1.86800 * 120.00409 * 0.02562 * 6 4 3 9 9 H 1.48502 * 109.47442 * 89.99373 * 8 6 4 10 10 H 1.48498 * 109.47152 * 209.99930 * 8 6 4 11 11 H 1.48506 * 109.46689 * 329.99562 * 8 6 4 12 12 C 1.46899 * 110.99991 * 123.95060 * 2 1 3 13 13 C 1.52998 * 109.46858 * 163.94840 * 12 2 1 14 14 H 1.09003 * 109.47469 * 55.04211 * 13 12 2 15 15 O 1.42900 * 109.47173 * 295.04684 * 13 12 2 16 16 C 1.53000 * 109.47107 * 175.04575 * 13 12 2 17 17 N 1.46904 * 109.47085 * 184.99848 * 16 13 12 18 18 C 1.46902 * 110.99534 * 180.02562 * 17 16 13 19 19 C 1.50703 * 109.46547 * 180.02562 * 18 17 16 20 20 C 1.29436 * 117.96487 * 94.73749 * 19 18 17 21 21 C 1.50071 * 124.07974 * 180.23493 * 20 19 18 22 22 C 1.53022 * 110.19767 * 343.31682 * 21 20 19 23 23 C 1.53391 * 108.43949 * 49.24750 * 22 21 20 24 24 C 1.50069 * 117.96030 * 274.99762 * 19 18 17 25 25 H 1.08998 * 109.47439 * 65.32228 * 1 2 3 26 26 H 1.08994 * 109.47470 * 305.31641 * 1 2 3 27 27 H 1.09004 * 109.46549 * 185.31844 * 1 2 3 28 28 H 1.08997 * 109.47475 * 53.95587 * 3 2 1 29 29 H 1.09000 * 109.46537 * 173.95045 * 3 2 1 30 30 H 0.97003 * 119.99757 * 180.02562 * 7 6 4 31 31 H 1.08997 * 109.47186 * 283.95255 * 12 2 1 32 32 H 1.08998 * 109.46913 * 43.95393 * 12 2 1 33 33 H 0.96698 * 114.00266 * 299.99986 * 15 13 12 34 34 H 1.08996 * 109.47256 * 305.00193 * 16 13 12 35 35 H 1.09001 * 109.46972 * 65.00325 * 16 13 12 36 36 H 1.00901 * 111.00111 * 303.95536 * 17 16 13 37 37 H 1.08997 * 109.47417 * 299.99878 * 18 17 16 38 38 H 1.08997 * 109.47488 * 60.00619 * 18 17 16 39 39 H 1.08003 * 117.96179 * 0.46124 * 20 19 18 40 40 H 1.08999 * 109.48446 * 222.99223 * 21 20 19 41 41 H 1.08996 * 109.17718 * 103.44445 * 21 20 19 42 42 H 1.09004 * 109.63910 * 289.56037 * 22 21 20 43 43 H 1.08999 * 109.81490 * 169.03803 * 22 21 20 44 44 H 1.08997 * 109.64059 * 172.88297 * 23 22 21 45 45 H 1.09004 * 109.64240 * 52.25058 * 23 22 21 46 46 H 1.09006 * 109.35754 * 283.05571 * 24 19 18 47 47 H 1.08996 * 109.36189 * 42.77956 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6368 2.0472 -1.2985 5 1 1.0740 1.5115 -2.0485 6 6 2.0266 3.3496 -1.5284 7 7 1.7141 3.9390 -2.6618 8 14 2.9995 4.2764 -0.2308 9 1 4.4520 4.0640 -0.4555 10 1 2.6912 5.7261 -0.3225 11 1 2.6288 3.7757 1.1172 12 6 1.9955 -0.7659 1.1376 13 6 3.4724 -1.0852 0.8977 14 1 4.0177 -0.1608 0.7072 15 8 3.5950 -1.9518 -0.2319 16 6 4.0527 -1.7741 2.1344 17 7 5.4967 -1.9729 1.9519 18 6 6.0891 -2.6340 3.1223 19 6 7.5679 -2.8200 2.8992 20 6 8.3704 -1.9189 3.3676 21 6 9.8632 -1.9640 3.2203 22 6 10.3133 -3.3735 2.8300 23 6 9.4548 -3.8478 1.6507 24 6 8.0180 -4.0353 2.1425 25 1 -0.3634 0.4290 -0.9338 26 1 -0.3634 0.5940 0.8385 27 1 -0.3632 -1.0233 0.0953 28 1 1.5610 1.9274 0.8309 29 1 3.0796 1.3445 0.1083 30 1 1.9886 4.8552 -2.8238 31 1 1.8943 -0.1776 2.0496 32 1 1.4350 -1.6951 1.2405 33 1 3.1332 -2.7955 -0.1323 34 1 3.8797 -1.1513 3.0120 35 1 3.5677 -2.7404 2.2732 36 1 5.6864 -2.4932 1.1085 37 1 5.9303 -2.0176 4.0071 38 1 5.6182 -3.6063 3.2676 39 1 7.9392 -1.0845 3.9007 40 1 10.3303 -1.6839 4.1645 41 1 10.1680 -1.2600 2.4461 42 1 10.1792 -4.0482 3.6756 43 1 11.3629 -3.3582 2.5365 44 1 9.8401 -4.7957 1.2749 45 1 9.4761 -3.1000 0.8579 46 1 7.9707 -4.9061 2.7965 47 1 7.3624 -4.1909 1.2858 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566121337.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:27 Heat of formation + Delta-G solvation = -44.898703 kcal Electronic energy + Delta-G solvation = -22362.201529 eV Core-core repulsion = 19158.420460 eV Total energy + Delta-G solvation = -3203.781069 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.11644 -38.19138 -36.06716 -34.99068 -32.40367 -31.87149 -30.96086 -29.55308 -27.95621 -26.27913 -24.41639 -23.39299 -22.85740 -21.65079 -21.44171 -19.93921 -17.83364 -16.95097 -16.50530 -16.04991 -15.68454 -15.20579 -14.78277 -14.59626 -14.45264 -14.22706 -13.98740 -13.75946 -13.48386 -13.13644 -12.97443 -12.68326 -12.45785 -12.35184 -12.28595 -11.98913 -11.76103 -11.51858 -11.29819 -11.07449 -11.05024 -10.76069 -10.68953 -10.46491 -10.38598 -10.15154 -9.86690 -9.63984 -9.19191 -8.98047 -8.51083 -8.44352 -7.31595 -5.99810 -3.96402 2.06706 3.33233 3.39802 3.41464 4.08870 4.43994 4.46892 4.50465 4.65267 4.69136 4.84905 4.97666 5.02228 5.16260 5.19406 5.26553 5.29223 5.34503 5.35024 5.36368 5.48833 5.55336 5.60277 5.64946 5.67960 5.71737 5.73909 5.79945 5.93263 5.96238 6.02973 6.08330 6.26995 6.42287 6.49721 6.68157 6.86801 6.88402 6.94634 7.00996 7.35221 7.64242 7.89281 8.05118 8.07896 8.71243 9.09259 9.62078 11.13519 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017951 B = 0.003391 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.440624 B = 8256.044487 C = 9151.989743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.522 5.522 3 C 0.161 3.839 4 C -0.505 4.505 5 H 0.080 0.920 6 C 0.068 3.932 7 N -0.902 5.902 8 Si 0.873 3.127 9 H -0.274 1.274 10 H -0.286 1.286 11 H -0.269 1.269 12 C 0.024 3.976 13 C 0.113 3.887 14 H 0.111 0.889 15 O -0.541 6.541 16 C 0.029 3.971 17 N -0.678 5.678 18 C 0.092 3.908 19 C -0.125 4.125 20 C -0.135 4.135 21 C -0.091 4.091 22 C -0.120 4.120 23 C -0.120 4.120 24 C -0.081 4.081 25 H 0.078 0.922 26 H 0.012 0.988 27 H 0.044 0.956 28 H -0.014 1.014 29 H 0.026 0.974 30 H 0.263 0.737 31 H 0.031 0.969 32 H 0.063 0.937 33 H 0.360 0.640 34 H 0.077 0.923 35 H 0.029 0.971 36 H 0.349 0.651 37 H 0.073 0.927 38 H 0.030 0.970 39 H 0.104 0.896 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.067 0.933 46 H 0.069 0.931 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.232 -17.215 14.445 25.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.246 5.246 3 C 0.034 3.966 4 C -0.543 4.543 5 H 0.098 0.902 6 C -0.134 4.134 7 N -0.541 5.541 8 Si 0.701 3.299 9 H -0.200 1.200 10 H -0.212 1.212 11 H -0.194 1.194 12 C -0.106 4.106 13 C 0.053 3.947 14 H 0.128 0.872 15 O -0.344 6.344 16 C -0.101 4.101 17 N -0.311 5.311 18 C -0.037 4.037 19 C -0.126 4.126 20 C -0.154 4.154 21 C -0.128 4.128 22 C -0.157 4.157 23 C -0.158 4.158 24 C -0.119 4.119 25 H 0.096 0.904 26 H 0.030 0.970 27 H 0.063 0.937 28 H 0.004 0.996 29 H 0.044 0.956 30 H 0.073 0.927 31 H 0.049 0.951 32 H 0.082 0.918 33 H 0.205 0.795 34 H 0.095 0.905 35 H 0.047 0.953 36 H 0.168 0.832 37 H 0.091 0.909 38 H 0.048 0.952 39 H 0.122 0.878 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.086 0.914 46 H 0.087 0.913 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 12.900 -16.126 13.895 24.891 hybrid contribution -0.542 -0.209 1.619 1.720 sum 12.359 -16.335 15.515 25.696 Atomic orbital electron populations 1.22220 0.88163 0.98840 1.01596 1.61877 1.06995 1.16500 1.39203 1.20252 0.95089 0.83983 0.97230 1.21016 1.35420 0.97070 1.00832 0.90163 1.24896 0.95809 0.97383 0.95283 1.69899 1.47084 1.13260 1.23841 0.86889 0.81121 0.79230 0.82702 1.19983 1.21231 1.19388 1.22730 0.95936 0.98425 0.93483 1.22014 0.94530 0.94032 0.84096 0.87171 1.86712 1.76097 1.30558 1.41002 1.22704 0.88141 0.99264 0.99997 1.60425 1.11643 1.54041 1.04949 1.21048 0.91643 0.96689 0.94301 1.20693 0.94477 0.96997 1.00420 1.21919 0.94924 0.98083 1.00470 1.20451 0.93357 0.97375 1.01627 1.21595 0.99142 0.96613 0.98392 1.21598 0.94752 1.01352 0.98063 1.20369 0.96620 0.95801 0.99061 0.90357 0.96950 0.93669 0.99621 0.95623 0.92727 0.95084 0.91807 0.79477 0.90465 0.95293 0.83211 0.90897 0.95171 0.87800 0.91276 0.90748 0.91988 0.91846 0.91818 0.91420 0.91308 0.91219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 9.32 60.07 0.56 1.34 16 2 N -0.52 -11.12 4.66 -244.37 -1.14 -12.26 16 3 C 0.16 4.01 3.64 -4.97 -0.02 3.99 16 4 C -0.51 -14.78 9.14 -34.44 -0.31 -15.10 16 5 H 0.08 2.55 7.34 -52.49 -0.39 2.17 16 6 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 7 N -0.90 -28.25 13.96 55.43 0.77 -27.47 16 8 Si 0.87 22.10 27.47 -169.99 -4.67 17.43 16 9 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 10 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 11 H -0.27 -6.56 6.54 56.52 0.37 -6.19 16 12 C 0.02 0.40 4.61 -3.83 -0.02 0.38 16 13 C 0.11 1.79 3.26 -26.73 -0.09 1.70 16 14 H 0.11 2.12 6.46 -51.93 -0.34 1.78 16 15 O -0.54 -8.70 12.81 -35.23 -0.45 -9.16 16 16 C 0.03 0.36 5.36 -3.82 -0.02 0.34 16 17 N -0.68 -8.39 6.49 -115.06 -0.75 -9.14 16 18 C 0.09 0.95 5.69 -4.97 -0.03 0.93 16 19 C -0.13 -1.25 5.35 -100.94 -0.54 -1.79 16 20 C -0.13 -1.35 9.37 -35.90 -0.34 -1.69 16 21 C -0.09 -0.77 6.11 -28.18 -0.17 -0.94 16 22 C -0.12 -0.90 6.01 -26.52 -0.16 -1.06 16 23 C -0.12 -0.97 6.01 -26.52 -0.16 -1.13 16 24 C -0.08 -0.70 5.80 -28.18 -0.16 -0.87 16 25 H 0.08 1.68 7.02 -51.93 -0.36 1.31 16 26 H 0.01 0.23 8.07 -51.93 -0.42 -0.19 16 27 H 0.04 0.72 7.88 -51.93 -0.41 0.32 16 28 H -0.01 -0.35 7.13 -51.93 -0.37 -0.72 16 29 H 0.03 0.65 5.77 -51.93 -0.30 0.35 16 30 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 31 H 0.03 0.51 8.05 -51.93 -0.42 0.09 16 32 H 0.06 0.89 7.82 -51.93 -0.41 0.49 16 33 H 0.36 4.27 9.05 45.56 0.41 4.68 16 34 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.35 4.35 8.25 -39.29 -0.32 4.02 16 37 H 0.07 0.76 7.80 -51.93 -0.40 0.35 16 38 H 0.03 0.29 8.11 -51.93 -0.42 -0.13 16 39 H 0.10 1.07 7.74 -52.48 -0.41 0.66 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.45 8.12 -51.93 -0.42 0.03 16 43 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.07 0.61 8.12 -51.93 -0.42 0.19 16 46 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.07 0.61 8.11 -51.93 -0.42 0.19 16 LS Contribution 367.41 15.07 5.54 5.54 Total: -1.00 -32.44 367.41 -10.19 -42.63 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -7.94 Total: 4.41 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: -1.55 Total: -11.99 kcal Atomic # 7 Polarization: -47.76 SS G_CDS: -1.11 Total: -48.87 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: -0.45 Total: -9.16 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.67 Total: 17.43 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.44 -10.19 -42.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566121337.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.269 kcal (2) G-P(sol) polarization free energy of solvation -32.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds