Wall clock time and date at job start Tue Mar 31 2020 05:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46911 * 110.99923 * 2 1 4 4 C 1.50699 * 109.46934 * 66.04694 * 3 2 1 5 5 H 1.07998 * 120.00329 * 359.97438 * 4 3 2 6 6 C 1.37872 * 119.99875 * 179.97438 * 4 3 2 7 7 N 1.31516 * 120.00203 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 120.00166 * 179.97438 * 6 4 3 9 9 H 1.48504 * 109.46959 * 90.00426 * 8 6 4 10 10 H 1.48501 * 109.47746 * 210.00275 * 8 6 4 11 11 H 1.48505 * 109.47239 * 330.00628 * 8 6 4 12 12 C 1.46898 * 111.00156 * 236.04627 * 2 1 3 13 13 C 1.53002 * 109.47189 * 199.85043 * 12 2 1 14 14 H 1.09005 * 109.46951 * 300.46423 * 13 12 2 15 15 O 1.42901 * 109.47162 * 60.45810 * 13 12 2 16 16 C 1.52997 * 109.47215 * 180.46355 * 13 12 2 17 17 N 1.46898 * 109.46855 * 180.02562 * 16 13 12 18 18 C 1.46906 * 110.99767 * 179.97438 * 17 16 13 19 19 C 1.53002 * 109.47208 * 179.97438 * 18 17 16 20 20 H 1.09002 * 109.63770 * 305.42394 * 19 18 17 21 21 C 1.53021 * 109.81833 * 65.94992 * 19 18 17 22 22 C 1.50060 * 110.14874 * 169.22381 * 21 19 18 23 23 C 1.29447 * 124.07825 * 342.86871 * 22 21 19 24 24 C 1.50069 * 124.07091 * 0.47061 * 23 22 21 25 25 C 1.53020 * 110.14815 * 342.86670 * 24 23 22 26 26 H 1.08996 * 109.47265 * 188.77178 * 1 2 3 27 27 H 1.09004 * 109.47163 * 308.77610 * 1 2 3 28 28 H 1.09004 * 109.46756 * 68.77626 * 1 2 3 29 29 H 1.08999 * 109.46619 * 186.04217 * 3 2 1 30 30 H 1.08998 * 109.46939 * 306.04471 * 3 2 1 31 31 H 0.96994 * 120.00538 * 179.97438 * 7 6 4 32 32 H 1.09003 * 109.47021 * 79.85586 * 12 2 1 33 33 H 1.08991 * 109.47352 * 319.84881 * 12 2 1 34 34 H 0.96704 * 113.99502 * 60.00483 * 15 13 12 35 35 H 1.08994 * 109.47124 * 60.00238 * 16 13 12 36 36 H 1.08997 * 109.46943 * 300.00010 * 16 13 12 37 37 H 1.00897 * 111.00414 * 56.04997 * 17 16 13 38 38 H 1.09003 * 109.46801 * 60.00007 * 18 17 16 39 39 H 1.08992 * 109.47472 * 300.00179 * 18 17 16 40 40 H 1.08998 * 109.35942 * 289.43642 * 21 19 18 41 41 H 1.09006 * 109.35556 * 49.15213 * 21 19 18 42 42 H 1.07999 * 117.96609 * 162.87312 * 22 21 19 43 43 H 1.07997 * 117.96268 * 180.49274 * 23 22 21 44 44 H 1.09004 * 109.35721 * 222.65913 * 24 23 22 45 45 H 1.09001 * 109.35507 * 103.07520 * 24 23 22 46 46 H 1.09005 * 109.64093 * 169.11766 * 25 24 23 47 47 H 1.09000 * 109.64257 * 289.75041 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2985 5 1 1.0739 1.5116 2.0485 6 6 2.0276 3.3491 1.5289 7 7 2.7136 4.0013 0.6158 8 14 1.5826 4.1869 3.1381 9 1 2.6588 3.9500 4.1336 10 1 1.4312 5.6467 2.9110 11 1 0.3042 3.6302 3.6491 12 6 1.9955 -0.7660 -1.1376 13 6 3.4449 -1.1666 -0.8556 14 1 4.0464 -0.2705 -0.7026 15 8 3.4946 -1.9796 0.3186 16 6 3.9970 -1.9544 -2.0453 17 7 5.3884 -2.3396 -1.7742 18 6 5.9524 -3.1001 -2.8974 19 6 7.3994 -3.4821 -2.5792 20 1 7.9674 -2.5868 -2.3261 21 6 7.4310 -4.4609 -1.4034 22 6 8.8062 -5.0420 -1.2514 23 6 9.7145 -5.0065 -2.1730 24 6 9.5226 -4.3704 -3.5186 25 6 8.0318 -4.1667 -3.7975 26 1 -0.3633 -1.0156 0.1567 27 1 -0.3634 0.6436 0.8012 28 1 -0.3633 0.3720 -0.9580 29 1 3.0797 1.3444 -0.1082 30 1 1.5611 1.9274 -0.8309 31 1 2.9882 4.9174 0.7778 32 1 1.9567 -0.1525 -2.0377 33 1 1.3924 -1.6622 -1.2824 34 1 2.9804 -2.7960 0.2536 35 1 3.9591 -1.3343 -2.9408 36 1 3.3955 -2.8505 -2.1982 37 1 5.4581 -2.8615 -0.9135 38 1 5.9285 -2.4880 -3.7990 39 1 5.3642 -4.0038 -3.0562 40 1 7.1577 -3.9354 -0.4884 41 1 6.7187 -5.2659 -1.5842 42 1 9.0535 -5.5196 -0.3149 43 1 10.6697 -5.4635 -1.9605 44 1 9.9492 -5.0150 -4.2872 45 1 10.0289 -3.4053 -3.5374 46 1 7.9066 -3.5364 -4.6780 47 1 7.5549 -5.1326 -3.9637 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574632591.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:30 Heat of formation + Delta-G solvation = -48.423559 kcal Electronic energy + Delta-G solvation = -22259.986262 eV Core-core repulsion = 19056.052344 eV Total energy + Delta-G solvation = -3203.933918 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.18222 -38.05059 -35.92341 -34.86225 -32.44671 -31.79772 -30.97077 -29.37309 -27.26825 -26.22412 -24.58500 -23.45078 -22.68075 -21.45519 -20.94079 -19.98801 -18.15597 -16.73326 -16.37912 -15.90744 -15.87175 -15.08844 -14.77481 -14.58127 -14.44023 -14.22118 -13.74636 -13.54376 -13.42256 -13.22198 -12.98054 -12.58429 -12.40032 -12.31969 -11.93197 -11.76750 -11.66025 -11.37701 -11.13059 -10.87198 -10.85276 -10.70091 -10.61916 -10.55911 -10.32211 -10.30478 -9.71773 -9.54977 -9.18984 -9.08871 -8.38938 -8.36337 -7.16411 -5.96959 -3.97419 2.09534 3.36842 3.42339 3.45795 4.01415 4.46602 4.48137 4.51262 4.70377 4.83460 4.94871 5.01655 5.07500 5.15336 5.27834 5.32240 5.36811 5.37748 5.43679 5.48320 5.56680 5.61854 5.65686 5.72351 5.74026 5.76384 5.84462 5.90469 5.99781 6.07135 6.15968 6.24148 6.34849 6.46068 6.58552 6.75071 6.75337 7.02584 7.33615 7.36591 7.44505 7.84981 8.10260 8.16357 8.26135 8.60706 9.09703 9.66158 11.14178 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022926 B = 0.002839 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.047021 B = 9861.159572 C =10374.912138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.531 5.531 3 C 0.192 3.808 4 C -0.504 4.504 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.274 1.274 12 C 0.026 3.974 13 C 0.116 3.884 14 H 0.111 0.889 15 O -0.540 6.540 16 C 0.030 3.970 17 N -0.683 5.683 18 C 0.065 3.935 19 C -0.087 4.087 20 H 0.084 0.916 21 C -0.090 4.090 22 C -0.150 4.150 23 C -0.162 4.162 24 C -0.090 4.090 25 C -0.114 4.114 26 H 0.043 0.957 27 H 0.077 0.923 28 H 0.007 0.993 29 H 0.032 0.968 30 H -0.012 1.012 31 H 0.261 0.739 32 H 0.033 0.967 33 H 0.057 0.943 34 H 0.358 0.642 35 H 0.077 0.923 36 H 0.026 0.974 37 H 0.347 0.653 38 H 0.071 0.929 39 H 0.025 0.975 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.101 0.899 43 H 0.099 0.901 44 H 0.068 0.932 45 H 0.073 0.927 46 H 0.066 0.934 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.684 -18.925 -9.492 22.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.255 5.255 3 C 0.067 3.933 4 C -0.542 4.542 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.199 1.199 12 C -0.103 4.103 13 C 0.056 3.944 14 H 0.128 0.872 15 O -0.343 6.343 16 C -0.100 4.100 17 N -0.316 5.316 18 C -0.065 4.065 19 C -0.106 4.106 20 H 0.102 0.898 21 C -0.127 4.127 22 C -0.168 4.168 23 C -0.180 4.180 24 C -0.127 4.127 25 C -0.152 4.152 26 H 0.062 0.938 27 H 0.095 0.905 28 H 0.026 0.974 29 H 0.050 0.950 30 H 0.006 0.994 31 H 0.070 0.930 32 H 0.051 0.949 33 H 0.076 0.924 34 H 0.203 0.797 35 H 0.096 0.904 36 H 0.044 0.956 37 H 0.167 0.833 38 H 0.089 0.911 39 H 0.043 0.957 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.119 0.881 43 H 0.117 0.883 44 H 0.087 0.913 45 H 0.092 0.908 46 H 0.085 0.915 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 9.559 -17.876 -9.088 22.215 hybrid contribution -1.217 -0.345 -0.096 1.268 sum 8.343 -18.221 -9.184 22.045 Atomic orbital electron populations 1.22226 0.88967 0.99874 1.00036 1.62033 1.06433 1.17844 1.39197 1.19778 0.95579 0.81468 0.96490 1.21150 1.34592 0.96797 1.01695 0.91904 1.24986 0.95379 0.97387 0.96942 1.69957 1.38494 1.11452 1.34036 0.86503 0.78841 0.78327 0.83750 1.20594 1.21398 1.19928 1.22661 0.95948 0.98047 0.93693 1.21980 0.95189 0.93870 0.83336 0.87161 1.86704 1.73226 1.35793 1.38558 1.22668 0.88544 0.98745 1.00082 1.60348 1.18521 1.47316 1.05411 1.22008 0.94098 0.95614 0.94751 1.21242 0.95835 0.98598 0.94895 0.89803 1.20547 0.94875 0.98125 0.99193 1.22067 0.95694 1.00311 0.98713 1.22031 0.99042 1.01139 0.95797 1.20434 0.96696 1.00573 0.95013 1.21619 0.95211 1.00634 0.97743 0.93839 0.90452 0.97448 0.94984 0.99417 0.92989 0.94926 0.92417 0.79736 0.90423 0.95553 0.83275 0.91099 0.95665 0.90397 0.91261 0.88095 0.88254 0.91304 0.90839 0.91533 0.91956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 9.37 60.06 0.56 1.31 16 2 N -0.53 -11.66 4.56 -244.37 -1.11 -12.77 16 3 C 0.19 5.11 4.55 -4.97 -0.02 5.09 16 4 C -0.50 -14.53 8.39 -34.44 -0.29 -14.82 16 5 H 0.06 1.80 7.16 -52.49 -0.38 1.43 16 6 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 7 N -0.90 -27.27 13.29 55.43 0.74 -26.54 16 8 Si 0.90 22.16 29.54 -169.99 -5.02 17.14 16 9 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 12 C 0.03 0.46 4.66 -3.82 -0.02 0.44 16 13 C 0.12 1.92 3.30 -26.73 -0.09 1.83 16 14 H 0.11 2.24 6.78 -51.93 -0.35 1.89 16 15 O -0.54 -8.99 12.55 -35.23 -0.44 -9.43 16 16 C 0.03 0.38 5.39 -3.83 -0.02 0.36 16 17 N -0.68 -8.53 6.50 -113.78 -0.74 -9.27 16 18 C 0.06 0.66 5.15 -3.82 -0.02 0.64 16 19 C -0.09 -0.82 2.44 -90.40 -0.22 -1.04 16 20 H 0.08 0.93 8.12 -51.93 -0.42 0.51 16 21 C -0.09 -0.83 4.98 -28.18 -0.14 -0.97 16 22 C -0.15 -1.34 9.80 -35.90 -0.35 -1.69 16 23 C -0.16 -1.37 9.80 -35.90 -0.35 -1.72 16 24 C -0.09 -0.70 6.11 -28.18 -0.17 -0.87 16 25 C -0.11 -0.91 5.31 -26.52 -0.14 -1.06 16 26 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.08 1.66 6.66 -51.93 -0.35 1.31 16 28 H 0.01 0.13 8.13 -51.93 -0.42 -0.29 16 29 H 0.03 0.91 6.63 -51.93 -0.34 0.57 16 30 H -0.01 -0.34 8.12 -51.93 -0.42 -0.76 16 31 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.03 0.58 8.00 -51.93 -0.42 0.17 16 33 H 0.06 0.86 7.94 -51.93 -0.41 0.45 16 34 H 0.36 4.48 9.05 45.56 0.41 4.89 16 35 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.35 4.28 6.69 -39.29 -0.26 4.02 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.03 0.24 8.10 -51.93 -0.42 -0.18 16 40 H 0.08 0.76 7.22 -51.93 -0.37 0.39 16 41 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 42 H 0.10 0.82 8.06 -52.49 -0.42 0.39 16 43 H 0.10 0.73 8.06 -52.49 -0.42 0.31 16 44 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 47 H 0.06 0.49 8.12 -51.93 -0.42 0.07 16 LS Contribution 368.70 15.07 5.56 5.56 Total: -1.00 -31.50 368.70 -10.33 -41.83 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -7.94 Total: 4.49 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: -1.37 Total: -11.01 kcal Atomic # 7 Polarization: -47.46 SS G_CDS: -1.12 Total: -48.58 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: -0.44 Total: -9.43 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.50 -10.33 -41.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574632591.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.594 kcal (2) G-P(sol) polarization free energy of solvation -31.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds