Wall clock time and date at job start Tue Mar 31 2020 05:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46898 * 110.99876 * 2 1 4 4 C 1.50696 * 109.47004 * 66.05396 * 3 2 1 5 5 H 1.07995 * 119.99992 * 359.97438 * 4 3 2 6 6 C 1.37880 * 119.99738 * 179.97438 * 4 3 2 7 7 N 1.31512 * 120.00107 * 359.97438 * 6 4 3 8 8 Si 1.86805 * 119.99822 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47204 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46833 * 119.99945 * 8 6 4 11 11 H 1.48499 * 109.46967 * 240.00146 * 8 6 4 12 12 C 1.46899 * 110.99493 * 236.04905 * 2 1 3 13 13 C 1.52999 * 109.47022 * 199.85217 * 12 2 1 14 14 H 1.08999 * 109.47260 * 300.46429 * 13 12 2 15 15 O 1.42903 * 109.47475 * 60.45994 * 13 12 2 16 16 C 1.53003 * 109.47474 * 180.46348 * 13 12 2 17 17 N 1.46897 * 109.47346 * 179.97438 * 16 13 12 18 18 C 1.46901 * 110.99975 * 180.02562 * 17 16 13 19 19 C 1.53004 * 109.47020 * 180.02562 * 18 17 16 20 20 H 1.08994 * 109.81350 * 55.52434 * 19 18 17 21 21 C 1.53026 * 109.64034 * 294.99611 * 19 18 17 22 22 C 1.50063 * 110.14809 * 190.87869 * 21 19 18 23 23 C 1.29447 * 124.07292 * 17.13469 * 22 21 19 24 24 C 1.50070 * 124.07706 * 359.50996 * 23 22 21 25 25 C 1.53035 * 110.13995 * 17.16142 * 24 23 22 26 26 H 1.08998 * 109.47241 * 188.77556 * 1 2 3 27 27 H 1.09005 * 109.47062 * 308.77000 * 1 2 3 28 28 H 1.08997 * 109.47249 * 68.77243 * 1 2 3 29 29 H 1.09003 * 109.46420 * 186.04717 * 3 2 1 30 30 H 1.08994 * 109.47314 * 306.04447 * 3 2 1 31 31 H 0.97000 * 119.99892 * 179.97438 * 7 6 4 32 32 H 1.08997 * 109.47626 * 79.85349 * 12 2 1 33 33 H 1.08997 * 109.47447 * 319.85104 * 12 2 1 34 34 H 0.96698 * 113.99287 * 60.00231 * 15 13 12 35 35 H 1.08998 * 109.46946 * 59.99440 * 16 13 12 36 36 H 1.08999 * 109.46927 * 299.99719 * 16 13 12 37 37 H 1.00902 * 110.99949 * 303.95321 * 17 16 13 38 38 H 1.09002 * 109.46876 * 60.00021 * 18 17 16 39 39 H 1.09000 * 109.46991 * 299.99746 * 18 17 16 40 40 H 1.08999 * 109.35981 * 311.09026 * 21 19 18 41 41 H 1.09003 * 109.35456 * 70.67661 * 21 19 18 42 42 H 1.07997 * 117.96621 * 197.15181 * 22 21 19 43 43 H 1.08002 * 117.95906 * 179.52897 * 23 22 21 44 44 H 1.08996 * 109.36220 * 137.36223 * 24 23 22 45 45 H 1.09006 * 109.35549 * 256.94380 * 24 23 22 46 46 H 1.09000 * 109.64006 * 190.86259 * 25 24 23 47 47 H 1.09009 * 109.65402 * 70.22820 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6370 2.0470 1.2985 5 1 1.0742 1.5113 2.0485 6 6 2.0278 3.3490 1.5289 7 7 2.7137 4.0011 0.6158 8 14 1.5830 4.1867 3.1383 9 1 0.8149 3.2444 3.9911 10 1 2.8245 4.5932 3.8444 11 1 0.7563 5.3883 2.8588 12 6 1.9953 -0.7659 -1.1377 13 6 3.4447 -1.1667 -0.8558 14 1 4.0463 -0.2707 -0.7028 15 8 3.4945 -1.9798 0.3183 16 6 3.9967 -1.9546 -2.0456 17 7 5.3885 -2.3388 -1.7752 18 6 5.9528 -3.0982 -2.8989 19 6 7.3998 -3.4803 -2.5808 20 1 7.4391 -4.0258 -1.6380 21 6 8.2554 -2.2156 -2.4793 22 6 9.7107 -2.5784 -2.4324 23 6 10.1825 -3.7310 -2.7855 24 6 9.3390 -4.8688 -3.2812 25 6 7.9613 -4.3567 -3.7075 26 1 -0.3633 -1.0156 0.1568 27 1 -0.3633 0.6435 0.8013 28 1 -0.3633 0.3721 -0.9579 29 1 3.0797 1.3443 -0.1083 30 1 1.5611 1.9273 -0.8309 31 1 2.9883 4.9173 0.7778 32 1 1.9565 -0.1526 -2.0378 33 1 1.3922 -1.6622 -1.2825 34 1 2.9802 -2.7962 0.2533 35 1 3.9588 -1.3343 -2.9411 36 1 3.3952 -2.8506 -2.1985 37 1 5.9532 -1.5290 -1.5666 38 1 5.9282 -2.4856 -3.8002 39 1 5.3653 -4.0024 -3.0579 40 1 8.0686 -1.5825 -3.3467 41 1 7.9893 -1.6712 -1.5732 42 1 10.4078 -1.8317 -2.0820 43 1 11.2497 -3.8832 -2.7190 44 1 9.8298 -5.3378 -4.1340 45 1 9.2210 -5.6045 -2.4855 46 1 7.2944 -5.2011 -3.8818 47 1 8.0556 -3.7661 -4.6188 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574632592.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:32 Heat of formation + Delta-G solvation = -47.077904 kcal Electronic energy + Delta-G solvation = -22270.235147 eV Core-core repulsion = 19066.359581 eV Total energy + Delta-G solvation = -3203.875566 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.16490 -37.97234 -35.89938 -34.83543 -32.45782 -31.79448 -30.95305 -29.30651 -27.28462 -26.21448 -24.57475 -23.45859 -22.66586 -21.51897 -20.91837 -19.97124 -18.14695 -16.62546 -16.46586 -16.02488 -15.50266 -15.09506 -14.80512 -14.63598 -14.36545 -14.27012 -13.73966 -13.50921 -13.34173 -13.27062 -12.97693 -12.60950 -12.53448 -12.14830 -11.93591 -11.78496 -11.62687 -11.37625 -11.12503 -10.87712 -10.84545 -10.67682 -10.61628 -10.56435 -10.31917 -10.29626 -9.73536 -9.43363 -9.17201 -9.07338 -8.40536 -8.35618 -7.16585 -5.99685 -3.99749 2.11399 3.33862 3.41115 3.46737 4.01225 4.46186 4.47806 4.52422 4.71070 4.86879 4.97328 5.01042 5.10225 5.16978 5.29143 5.33882 5.35821 5.36785 5.45182 5.51289 5.59821 5.62653 5.68590 5.72508 5.75651 5.76712 5.77957 5.91730 6.00008 6.07039 6.16685 6.24766 6.34708 6.47693 6.53681 6.75301 6.77018 7.01483 7.30737 7.34083 7.38757 7.84104 8.11861 8.21711 8.31898 8.59380 9.07980 9.64079 11.11540 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021398 B = 0.002960 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.218796 B = 9457.000803 C =10350.805165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.530 5.530 3 C 0.192 3.808 4 C -0.502 4.502 5 H 0.064 0.936 6 C 0.053 3.947 7 N -0.901 5.901 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.286 1.286 12 C 0.026 3.974 13 C 0.119 3.881 14 H 0.098 0.902 15 O -0.530 6.530 16 C 0.027 3.973 17 N -0.679 5.679 18 C 0.064 3.936 19 C -0.085 4.085 20 H 0.083 0.917 21 C -0.092 4.092 22 C -0.148 4.148 23 C -0.164 4.164 24 C -0.089 4.089 25 C -0.114 4.114 26 H 0.044 0.956 27 H 0.077 0.923 28 H 0.007 0.993 29 H 0.030 0.970 30 H -0.012 1.012 31 H 0.260 0.740 32 H 0.030 0.970 33 H 0.060 0.940 34 H 0.360 0.640 35 H 0.034 0.966 36 H 0.071 0.929 37 H 0.343 0.657 38 H 0.026 0.974 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.101 0.899 43 H 0.099 0.901 44 H 0.068 0.932 45 H 0.072 0.928 46 H 0.065 0.935 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.478 -16.677 -10.559 21.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.254 5.254 3 C 0.067 3.933 4 C -0.541 4.541 5 H 0.082 0.918 6 C -0.147 4.147 7 N -0.541 5.541 8 Si 0.725 3.275 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.212 1.212 12 C -0.104 4.104 13 C 0.059 3.941 14 H 0.116 0.884 15 O -0.332 6.332 16 C -0.103 4.103 17 N -0.310 5.310 18 C -0.065 4.065 19 C -0.104 4.104 20 H 0.101 0.899 21 C -0.129 4.129 22 C -0.166 4.166 23 C -0.182 4.182 24 C -0.126 4.126 25 C -0.152 4.152 26 H 0.063 0.937 27 H 0.095 0.905 28 H 0.025 0.975 29 H 0.048 0.952 30 H 0.005 0.995 31 H 0.069 0.931 32 H 0.048 0.952 33 H 0.078 0.922 34 H 0.205 0.795 35 H 0.052 0.948 36 H 0.089 0.911 37 H 0.162 0.838 38 H 0.044 0.956 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.096 0.904 42 H 0.119 0.881 43 H 0.117 0.883 44 H 0.087 0.913 45 H 0.091 0.909 46 H 0.084 0.916 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.926 -16.792 -9.586 21.734 hybrid contribution -0.574 1.384 -0.953 1.776 sum 9.352 -15.408 -10.539 20.879 Atomic orbital electron populations 1.22227 0.88919 0.99961 0.99991 1.62019 1.06474 1.17715 1.39239 1.19768 0.95434 0.81583 0.96519 1.21200 1.34417 0.96765 1.01680 0.91785 1.24991 0.95366 0.97395 0.96984 1.69966 1.38655 1.11380 1.34082 0.86446 0.78163 0.79227 0.83628 1.19629 1.20995 1.21207 1.22675 0.96148 0.98072 0.93493 1.21843 0.95002 0.93235 0.84068 0.88402 1.86679 1.73610 1.35637 1.37310 1.22712 0.90282 0.99417 0.97857 1.60382 1.02590 1.28541 1.39514 1.22014 0.94637 0.98097 0.91787 1.21229 0.93256 0.96314 0.99602 0.89855 1.20566 0.92175 0.97761 1.02442 1.22075 0.96980 0.97454 1.00095 1.22020 0.99381 0.95421 1.01356 1.20427 0.94904 0.96673 1.00627 1.21624 0.96065 0.99353 0.98190 0.93735 0.90467 0.97480 0.95185 0.99469 0.93067 0.95205 0.92196 0.79468 0.94803 0.91087 0.83783 0.95587 0.91200 0.91135 0.90377 0.88055 0.88261 0.91333 0.90920 0.91609 0.91917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 9.37 60.06 0.56 1.31 16 2 N -0.53 -11.65 4.56 -244.38 -1.11 -12.76 16 3 C 0.19 5.08 4.55 -4.98 -0.02 5.06 16 4 C -0.50 -14.41 8.39 -34.44 -0.29 -14.70 16 5 H 0.06 1.84 7.16 -52.49 -0.38 1.46 16 6 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 7 N -0.90 -27.07 13.29 55.43 0.74 -26.34 16 8 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 9 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 C 0.03 0.46 4.66 -3.82 -0.02 0.44 16 13 C 0.12 1.97 3.24 -26.73 -0.09 1.88 16 14 H 0.10 1.91 6.78 -51.93 -0.35 1.55 16 15 O -0.53 -9.32 13.08 -35.23 -0.46 -9.78 16 16 C 0.03 0.35 5.35 -3.82 -0.02 0.33 16 17 N -0.68 -8.38 6.37 -113.78 -0.72 -9.11 16 18 C 0.06 0.65 5.15 -3.82 -0.02 0.63 16 19 C -0.09 -0.80 2.46 -90.40 -0.22 -1.02 16 20 H 0.08 0.89 8.12 -51.93 -0.42 0.47 16 21 C -0.09 -0.89 4.94 -28.18 -0.14 -1.03 16 22 C -0.15 -1.38 9.80 -35.90 -0.35 -1.73 16 23 C -0.16 -1.41 9.80 -35.90 -0.35 -1.76 16 24 C -0.09 -0.68 6.12 -28.17 -0.17 -0.86 16 25 C -0.11 -0.91 5.31 -26.51 -0.14 -1.05 16 26 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.08 1.65 6.67 -51.93 -0.35 1.30 16 28 H 0.01 0.13 8.13 -51.93 -0.42 -0.29 16 29 H 0.03 0.85 6.63 -51.93 -0.34 0.50 16 30 H -0.01 -0.35 8.12 -51.93 -0.42 -0.77 16 31 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.03 0.53 8.00 -51.93 -0.42 0.12 16 33 H 0.06 0.90 7.94 -51.93 -0.41 0.49 16 34 H 0.36 5.00 9.04 45.56 0.41 5.41 16 35 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.34 4.38 7.25 -39.29 -0.28 4.10 16 38 H 0.03 0.26 8.11 -51.93 -0.42 -0.16 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 41 H 0.08 0.81 7.20 -51.93 -0.37 0.43 16 42 H 0.10 0.88 8.06 -52.49 -0.42 0.46 16 43 H 0.10 0.75 8.06 -52.49 -0.42 0.33 16 44 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.06 0.51 8.13 -51.92 -0.42 0.08 16 LS Contribution 369.50 15.07 5.57 5.57 Total: -1.00 -31.38 369.50 -10.35 -41.72 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -7.96 Total: 4.73 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: -1.37 Total: -11.07 kcal Atomic # 7 Polarization: -47.10 SS G_CDS: -1.10 Total: -48.20 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: -0.46 Total: -9.78 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.38 -10.35 -41.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574632592.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.355 kcal (2) G-P(sol) polarization free energy of solvation -31.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds