Wall clock time and date at job start Tue Mar 31 2020 05:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46904 * 110.99727 * 2 1 4 4 C 1.50700 * 109.47073 * 66.04883 * 3 2 1 5 5 H 1.08004 * 119.99717 * 359.97438 * 4 3 2 6 6 C 1.37879 * 120.00307 * 179.97438 * 4 3 2 7 7 N 1.31508 * 119.99571 * 359.97438 * 6 4 3 8 8 Si 1.86791 * 120.00081 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47469 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47146 * 119.99981 * 8 6 4 11 11 H 1.48504 * 109.47079 * 239.99837 * 8 6 4 12 12 C 1.46904 * 110.99995 * 236.05043 * 2 1 3 13 13 C 1.52993 * 109.46915 * 293.95004 * 12 2 1 14 14 H 1.08999 * 109.47647 * 60.00605 * 13 12 2 15 15 O 1.42902 * 109.47301 * 300.00249 * 13 12 2 16 16 C 1.53000 * 109.47114 * 180.02562 * 13 12 2 17 17 N 1.46905 * 109.47364 * 184.99981 * 16 13 12 18 18 C 1.46900 * 111.00015 * 180.02562 * 17 16 13 19 19 C 1.53001 * 109.46982 * 180.02562 * 18 17 16 20 20 H 1.08999 * 109.63492 * 305.41866 * 19 18 17 21 21 C 1.53020 * 109.81854 * 65.94889 * 19 18 17 22 22 C 1.50062 * 110.14863 * 169.22338 * 21 19 18 23 23 C 1.29445 * 124.07609 * 342.86851 * 22 21 19 24 24 C 1.50072 * 124.07465 * 0.46821 * 23 22 21 25 25 C 1.53026 * 110.14449 * 342.86958 * 24 23 22 26 26 H 1.08998 * 109.46713 * 183.95068 * 1 2 3 27 27 H 1.08998 * 109.47370 * 303.94867 * 1 2 3 28 28 H 1.09000 * 109.47200 * 63.95106 * 1 2 3 29 29 H 1.09006 * 109.47238 * 186.04417 * 3 2 1 30 30 H 1.08998 * 109.47125 * 306.04595 * 3 2 1 31 31 H 0.97003 * 120.00010 * 179.97438 * 7 6 4 32 32 H 1.09005 * 109.46833 * 173.95492 * 12 2 1 33 33 H 1.08993 * 109.47103 * 53.95191 * 12 2 1 34 34 H 0.96699 * 113.99750 * 299.99440 * 15 13 12 35 35 H 1.09004 * 109.47135 * 65.00016 * 16 13 12 36 36 H 1.09006 * 109.47096 * 305.00265 * 16 13 12 37 37 H 1.00892 * 110.99911 * 303.95521 * 17 16 13 38 38 H 1.08992 * 109.47432 * 59.99974 * 18 17 16 39 39 H 1.09000 * 109.46975 * 300.00025 * 18 17 16 40 40 H 1.09002 * 109.35760 * 289.43312 * 21 19 18 41 41 H 1.09000 * 109.35759 * 49.15263 * 21 19 18 42 42 H 1.07996 * 117.96584 * 162.86811 * 22 21 19 43 43 H 1.07997 * 117.96344 * 180.49175 * 23 22 21 44 44 H 1.09000 * 109.35750 * 222.66210 * 24 23 22 45 45 H 1.09002 * 109.35438 * 103.07648 * 24 23 22 46 46 H 1.09003 * 109.63872 * 169.11991 * 25 24 23 47 47 H 1.08996 * 109.64028 * 289.74986 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 1.2985 5 1 1.0739 1.5114 2.0485 6 6 2.0276 3.3492 1.5290 7 7 2.7135 4.0013 0.6159 8 14 1.5825 4.1868 3.1382 9 1 0.8145 3.2444 3.9910 10 1 2.8239 4.5933 3.8445 11 1 0.7559 5.3884 2.8587 12 6 1.9955 -0.7659 -1.1377 13 6 1.6315 -2.2425 -0.9704 14 1 0.5473 -2.3475 -0.9325 15 8 2.2010 -2.7391 0.2425 16 6 2.1804 -3.0403 -2.1550 17 7 1.7300 -4.4352 -2.0567 18 6 2.2396 -5.2333 -3.1798 19 6 1.7502 -6.6765 -3.0434 20 1 2.0297 -7.0671 -2.0649 21 6 0.2289 -6.7255 -3.2014 22 6 -0.2316 -8.1478 -3.3317 23 6 0.5475 -9.1381 -3.6283 24 6 2.0219 -9.0038 -3.8735 25 6 2.3803 -7.5407 -4.1429 26 1 -0.3633 -1.0252 0.0708 27 1 -0.3634 0.5739 0.8525 28 1 -0.3633 0.4513 -0.9233 29 1 3.0797 1.3445 -0.1082 30 1 1.5610 1.9274 -0.8309 31 1 2.9880 4.9174 0.7779 32 1 3.0798 -0.6610 -1.1756 33 1 1.5611 -0.3871 -2.0628 34 1 3.1653 -2.6771 0.2785 35 1 3.2699 -3.0085 -2.1410 36 1 1.8161 -2.6056 -3.0859 37 1 2.0000 -4.8409 -1.1733 38 1 3.3293 -5.2166 -3.1725 39 1 1.8761 -4.8139 -4.1180 40 1 -0.2399 -6.2726 -2.3278 41 1 -0.0596 -6.1712 -4.0944 42 1 -1.2781 -8.3583 -3.1679 43 1 0.1090 -10.1221 -3.7045 44 1 2.3014 -9.6090 -4.7359 45 1 2.5672 -9.3539 -2.9970 46 1 3.4635 -7.4201 -4.1281 47 1 1.9883 -7.2405 -5.1147 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574632593.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:34 Heat of formation + Delta-G solvation = -49.452607 kcal Electronic energy + Delta-G solvation = -22032.049762 eV Core-core repulsion = 18828.071221 eV Total energy + Delta-G solvation = -3203.978541 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.19358 -38.16172 -35.95639 -34.94430 -32.51378 -31.86612 -30.98058 -29.42792 -27.13335 -26.30225 -24.76875 -23.51019 -22.70220 -21.49499 -20.93406 -20.11924 -18.16805 -16.70049 -16.39028 -16.04599 -15.82335 -15.17121 -14.95853 -14.69808 -14.59610 -14.12575 -13.74995 -13.67190 -13.56636 -13.02991 -12.93598 -12.70118 -12.50370 -12.36311 -11.95656 -11.90171 -11.72865 -11.31804 -11.09407 -10.93344 -10.85906 -10.70999 -10.65547 -10.63434 -10.41008 -10.25365 -9.97367 -9.57855 -9.20683 -9.08540 -8.50331 -8.42658 -7.16978 -6.01490 -4.02178 2.07076 3.32385 3.39605 3.45507 3.91418 4.42935 4.43518 4.47520 4.63279 4.71868 4.90302 5.00847 5.02537 5.10997 5.22253 5.24310 5.29753 5.32346 5.37882 5.47994 5.53582 5.54831 5.58870 5.59943 5.70609 5.73904 5.78871 5.90731 5.99948 6.09672 6.15842 6.24380 6.35669 6.42897 6.44497 6.74194 6.81217 6.89907 7.28878 7.31454 7.35069 7.82435 7.98852 8.12380 8.23112 8.57724 9.06373 9.61998 11.09561 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.048787 B = 0.002349 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.790756 B =11915.350058 C =12105.772146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.529 5.529 3 C 0.192 3.808 4 C -0.503 4.503 5 H 0.065 0.935 6 C 0.053 3.947 7 N -0.901 5.901 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.285 1.285 12 C 0.025 3.975 13 C 0.114 3.886 14 H 0.103 0.897 15 O -0.546 6.546 16 C 0.028 3.972 17 N -0.684 5.684 18 C 0.063 3.937 19 C -0.084 4.084 20 H 0.071 0.929 21 C -0.078 4.078 22 C -0.150 4.150 23 C -0.167 4.167 24 C -0.089 4.089 25 C -0.115 4.115 26 H 0.048 0.952 27 H 0.074 0.926 28 H 0.008 0.992 29 H 0.027 0.973 30 H -0.011 1.011 31 H 0.260 0.740 32 H 0.067 0.933 33 H 0.029 0.971 34 H 0.367 0.633 35 H 0.031 0.969 36 H 0.077 0.923 37 H 0.347 0.653 38 H 0.028 0.972 39 H 0.070 0.930 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.100 0.900 43 H 0.098 0.902 44 H 0.068 0.932 45 H 0.071 0.929 46 H 0.063 0.937 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.032 -23.681 -10.700 26.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.254 5.254 3 C 0.067 3.933 4 C -0.542 4.542 5 H 0.083 0.917 6 C -0.148 4.148 7 N -0.541 5.541 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.212 1.212 12 C -0.105 4.105 13 C 0.054 3.946 14 H 0.121 0.879 15 O -0.350 6.350 16 C -0.102 4.102 17 N -0.315 5.315 18 C -0.066 4.066 19 C -0.103 4.103 20 H 0.089 0.911 21 C -0.115 4.115 22 C -0.168 4.168 23 C -0.185 4.185 24 C -0.126 4.126 25 C -0.154 4.154 26 H 0.067 0.933 27 H 0.093 0.907 28 H 0.026 0.974 29 H 0.046 0.954 30 H 0.007 0.993 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.047 0.953 34 H 0.213 0.787 35 H 0.049 0.951 36 H 0.095 0.905 37 H 0.166 0.834 38 H 0.046 0.954 39 H 0.089 0.911 40 H 0.101 0.899 41 H 0.090 0.910 42 H 0.118 0.882 43 H 0.116 0.884 44 H 0.087 0.913 45 H 0.089 0.911 46 H 0.082 0.918 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.032 -23.713 -10.454 25.995 hybrid contribution 1.039 1.027 -0.008 1.461 sum -0.994 -22.686 -10.463 25.002 Atomic orbital electron populations 1.22248 0.88928 0.99693 1.00329 1.62022 1.06914 1.17329 1.39090 1.19750 0.95222 0.81711 0.96631 1.21217 1.34489 0.96833 1.01675 0.91720 1.25007 0.95370 0.97391 0.97057 1.69970 1.38601 1.11390 1.34091 0.86429 0.78140 0.79267 0.83527 1.19601 1.21041 1.21153 1.22705 1.00326 0.93974 0.93508 1.21977 0.98973 0.90871 0.82770 0.87931 1.86596 1.24828 1.84881 1.38691 1.22685 0.97528 0.89562 1.00412 1.60384 1.63528 1.01921 1.05701 1.22025 0.96590 0.92838 0.95184 1.21198 0.95765 0.94161 0.99158 0.91058 1.20405 0.94858 0.93447 1.02827 1.22204 0.99356 0.95400 0.99806 1.22007 0.95727 0.98588 1.02226 1.20417 0.93833 0.96804 1.01534 1.21636 1.00229 0.94590 0.98897 0.93343 0.90742 0.97361 0.95447 0.99325 0.93039 0.91406 0.95341 0.78719 0.95092 0.90470 0.83428 0.95411 0.91143 0.89935 0.91018 0.88189 0.88373 0.91308 0.91096 0.91779 0.91678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 9.14 60.06 0.55 1.29 16 2 N -0.53 -11.62 4.62 -244.37 -1.13 -12.75 16 3 C 0.19 5.08 4.72 -4.97 -0.02 5.05 16 4 C -0.50 -14.39 8.46 -34.44 -0.29 -14.69 16 5 H 0.06 1.85 7.12 -52.48 -0.37 1.48 16 6 C 0.05 1.51 5.46 -17.82 -0.10 1.42 16 7 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 8 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 9 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 12 C 0.02 0.43 4.62 -3.83 -0.02 0.41 16 13 C 0.11 1.64 3.08 -26.73 -0.08 1.56 16 14 H 0.10 1.60 6.55 -51.93 -0.34 1.26 16 15 O -0.55 -8.31 12.72 -35.23 -0.45 -8.76 16 16 C 0.03 0.32 5.36 -3.82 -0.02 0.30 16 17 N -0.68 -7.20 6.22 -113.77 -0.71 -7.91 16 18 C 0.06 0.56 5.08 -3.82 -0.02 0.54 16 19 C -0.08 -0.69 2.37 -90.41 -0.21 -0.90 16 20 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 21 C -0.08 -0.69 5.23 -28.18 -0.15 -0.83 16 22 C -0.15 -1.25 9.80 -35.90 -0.35 -1.60 16 23 C -0.17 -1.30 9.80 -35.90 -0.35 -1.65 16 24 C -0.09 -0.61 6.12 -28.17 -0.17 -0.79 16 25 C -0.12 -0.83 5.31 -26.51 -0.14 -0.97 16 26 H 0.05 0.86 6.47 -51.93 -0.34 0.53 16 27 H 0.07 1.62 6.76 -51.93 -0.35 1.27 16 28 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 29 H 0.03 0.77 7.93 -51.93 -0.41 0.36 16 30 H -0.01 -0.31 8.12 -51.93 -0.42 -0.73 16 31 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.07 1.17 7.93 -51.93 -0.41 0.75 16 33 H 0.03 0.49 8.12 -51.93 -0.42 0.07 16 34 H 0.37 4.57 9.04 45.56 0.41 4.99 16 35 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.35 3.72 8.29 -39.30 -0.33 3.40 16 38 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 40 H 0.08 0.80 8.08 -51.93 -0.42 0.38 16 41 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 42 H 0.10 0.76 8.06 -52.49 -0.42 0.34 16 43 H 0.10 0.67 8.06 -52.49 -0.42 0.24 16 44 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.06 0.48 8.12 -51.93 -0.42 0.05 16 LS Contribution 370.52 15.07 5.58 5.58 Total: -1.00 -30.73 370.52 -10.39 -41.12 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -8.03 Total: 2.93 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: -1.38 Total: -10.85 kcal Atomic # 7 Polarization: -45.84 SS G_CDS: -1.10 Total: -46.94 kcal Atomic # 8 Polarization: -8.31 SS G_CDS: -0.45 Total: -8.76 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.73 -10.39 -41.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574632593.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.333 kcal (2) G-P(sol) polarization free energy of solvation -30.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds