Wall clock time and date at job start Tue Mar 31 2020 05:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.50706 * 109.46563 * 66.04606 * 3 2 1 5 5 H 1.07998 * 120.00168 * 359.97438 * 4 3 2 6 6 C 1.37880 * 119.99248 * 180.02562 * 4 3 2 7 7 N 1.31509 * 120.00492 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 119.99607 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.47190 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47438 * 119.99892 * 8 6 4 11 11 H 1.48500 * 109.47416 * 240.00111 * 8 6 4 12 12 C 1.46906 * 110.99793 * 236.04672 * 2 1 3 13 13 C 1.52996 * 109.47022 * 293.95609 * 12 2 1 14 14 H 1.09001 * 109.47349 * 60.00258 * 13 12 2 15 15 O 1.42902 * 109.47199 * 299.99941 * 13 12 2 16 16 C 1.53007 * 109.46799 * 180.02562 * 13 12 2 17 17 N 1.46905 * 109.46739 * 185.00242 * 16 13 12 18 18 C 1.46902 * 110.99587 * 180.02562 * 17 16 13 19 19 C 1.53008 * 109.46879 * 179.97438 * 18 17 16 20 20 H 1.08993 * 109.64222 * 55.41662 * 19 18 17 21 21 C 1.53024 * 109.64005 * 294.99596 * 19 18 17 22 22 C 1.50069 * 110.14695 * 190.87701 * 21 19 18 23 23 C 1.29443 * 124.07145 * 17.14007 * 22 21 19 24 24 C 1.50065 * 124.07870 * 359.54343 * 23 22 21 25 25 C 1.53014 * 110.15377 * 17.09865 * 24 23 22 26 26 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 27 27 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 28 28 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 29 29 H 1.08994 * 109.47410 * 186.04624 * 3 2 1 30 30 H 1.08999 * 109.47216 * 306.04953 * 3 2 1 31 31 H 0.97001 * 120.00000 * 180.02562 * 7 6 4 32 32 H 1.08997 * 109.46995 * 53.95554 * 12 2 1 33 33 H 1.09001 * 109.46848 * 173.95560 * 12 2 1 34 34 H 0.96698 * 113.99908 * 299.99896 * 15 13 12 35 35 H 1.09003 * 109.46950 * 304.99678 * 16 13 12 36 36 H 1.08997 * 109.47223 * 65.00005 * 16 13 12 37 37 H 1.00894 * 111.00266 * 56.04491 * 17 16 13 38 38 H 1.08995 * 109.47239 * 299.99695 * 18 17 16 39 39 H 1.08994 * 109.47318 * 59.99721 * 18 17 16 40 40 H 1.08999 * 109.36332 * 311.08811 * 21 19 18 41 41 H 1.08996 * 109.35692 * 70.67744 * 21 19 18 42 42 H 1.07997 * 117.96433 * 197.15393 * 22 21 19 43 43 H 1.07997 * 117.96418 * 179.53274 * 23 22 21 44 44 H 1.09003 * 109.36247 * 137.32126 * 24 23 22 45 45 H 1.09004 * 109.36123 * 256.90661 * 24 23 22 46 46 H 1.09004 * 109.64931 * 190.89476 * 25 24 23 47 47 H 1.09004 * 109.62026 * 70.27572 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.6370 2.0470 1.2985 5 1 1.0740 1.5114 2.0485 6 6 2.0270 3.3494 1.5285 7 7 2.7113 4.0021 0.6147 8 14 1.5832 4.1867 3.1383 9 1 0.8169 3.2436 3.9921 10 1 2.8251 4.5942 3.8432 11 1 0.7553 5.3876 2.8600 12 6 1.9954 -0.7660 -1.1377 13 6 1.6314 -2.2426 -0.9704 14 1 0.5471 -2.3474 -0.9324 15 8 2.2008 -2.7392 0.2425 16 6 2.1802 -3.0405 -2.1550 17 7 1.7296 -4.4352 -2.0567 18 6 2.2392 -5.2334 -3.1798 19 6 1.7506 -6.6769 -3.0427 20 1 0.6633 -6.6901 -2.9678 21 6 2.3603 -7.3094 -1.7898 22 6 2.1080 -8.7887 -1.7826 23 6 1.7591 -9.4699 -2.8264 24 6 1.5485 -8.8741 -4.1876 25 6 2.1977 -7.4906 -4.2636 26 1 -0.3634 -1.0252 0.0708 27 1 -0.3633 0.4513 -0.9233 28 1 -0.3633 0.5740 0.8525 29 1 3.0798 1.3443 -0.1082 30 1 1.5612 1.9273 -0.8309 31 1 2.9859 4.9182 0.7767 32 1 1.5611 -0.3872 -2.0628 33 1 3.0797 -0.6611 -1.1757 34 1 3.1651 -2.6772 0.2785 35 1 1.8159 -2.6057 -3.0859 36 1 3.2696 -3.0087 -2.1410 37 1 0.7235 -4.4873 -2.0028 38 1 1.8758 -4.8140 -4.1180 39 1 3.3290 -5.2168 -3.1725 40 1 3.4347 -7.1260 -1.7787 41 1 1.9103 -6.8619 -0.9036 42 1 2.2246 -9.3178 -0.8483 43 1 1.6104 -10.5333 -2.7107 44 1 1.9948 -9.5246 -4.9398 45 1 0.4796 -8.7824 -4.3805 46 1 1.8802 -6.9864 -5.1764 47 1 3.2828 -7.5946 -4.2574 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574632594.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:36 Heat of formation + Delta-G solvation = -47.429701 kcal Electronic energy + Delta-G solvation = -22041.550310 eV Core-core repulsion = 18837.659488 eV Total energy + Delta-G solvation = -3203.890821 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.17969 -38.09556 -35.94403 -34.92289 -32.50348 -31.87111 -30.96918 -29.36432 -27.13925 -26.30779 -24.75074 -23.51761 -22.71581 -21.54884 -20.90853 -20.10996 -18.15341 -16.66409 -16.40688 -16.04928 -15.64102 -15.13540 -14.94428 -14.74041 -14.54176 -14.21471 -13.76941 -13.69252 -13.47978 -13.04037 -12.92642 -12.75815 -12.55978 -12.17673 -11.97627 -11.89264 -11.71672 -11.31591 -11.09562 -10.93143 -10.86920 -10.71983 -10.65319 -10.60822 -10.39224 -10.26205 -9.94411 -9.51810 -9.19104 -9.06452 -8.46416 -8.42636 -7.17449 -6.01429 -4.02166 2.08532 3.32524 3.39792 3.45671 3.89938 4.43257 4.43788 4.48223 4.63772 4.78209 4.88931 4.98251 5.04785 5.12531 5.20410 5.24781 5.29714 5.33382 5.37858 5.51502 5.54975 5.57589 5.58000 5.61680 5.67916 5.73110 5.75212 5.92829 6.02861 6.08098 6.16725 6.22033 6.31952 6.43296 6.44388 6.76067 6.78363 6.88838 7.25486 7.28965 7.34321 7.82574 8.07266 8.17869 8.23786 8.57499 9.06362 9.62044 11.09595 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.047721 B = 0.002363 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.601265 B =11848.753148 C =12083.735155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.529 5.529 3 C 0.192 3.808 4 C -0.504 4.504 5 H 0.065 0.935 6 C 0.053 3.947 7 N -0.901 5.901 8 Si 0.898 3.102 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.285 1.285 12 C 0.024 3.976 13 C 0.118 3.882 14 H 0.090 0.910 15 O -0.536 6.536 16 C 0.027 3.973 17 N -0.677 5.677 18 C 0.063 3.937 19 C -0.084 4.084 20 H 0.070 0.930 21 C -0.078 4.078 22 C -0.148 4.148 23 C -0.169 4.169 24 C -0.088 4.088 25 C -0.115 4.115 26 H 0.047 0.953 27 H 0.007 0.993 28 H 0.074 0.926 29 H 0.028 0.972 30 H -0.011 1.011 31 H 0.260 0.740 32 H 0.026 0.974 33 H 0.070 0.930 34 H 0.368 0.632 35 H 0.034 0.966 36 H 0.075 0.925 37 H 0.339 0.661 38 H 0.027 0.973 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.084 0.916 42 H 0.100 0.900 43 H 0.098 0.902 44 H 0.068 0.932 45 H 0.070 0.930 46 H 0.063 0.937 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.310 -23.550 -10.859 25.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.253 5.253 3 C 0.067 3.933 4 C -0.542 4.542 5 H 0.083 0.917 6 C -0.148 4.148 7 N -0.541 5.541 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.212 1.212 12 C -0.106 4.106 13 C 0.057 3.943 14 H 0.108 0.892 15 O -0.339 6.339 16 C -0.103 4.103 17 N -0.308 5.308 18 C -0.066 4.066 19 C -0.102 4.102 20 H 0.088 0.912 21 C -0.115 4.115 22 C -0.167 4.167 23 C -0.187 4.187 24 C -0.125 4.125 25 C -0.153 4.153 26 H 0.065 0.935 27 H 0.025 0.975 28 H 0.093 0.907 29 H 0.046 0.954 30 H 0.006 0.994 31 H 0.070 0.930 32 H 0.044 0.956 33 H 0.088 0.912 34 H 0.214 0.786 35 H 0.052 0.948 36 H 0.093 0.907 37 H 0.157 0.843 38 H 0.045 0.955 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.102 0.898 42 H 0.118 0.882 43 H 0.116 0.884 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.082 0.918 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.183 -23.894 -9.884 25.885 hybrid contribution -0.394 1.414 -0.938 1.742 sum -1.577 -22.481 -10.822 25.000 Atomic orbital electron populations 1.22247 0.89048 0.99573 1.00309 1.62016 1.06796 1.17350 1.39107 1.19751 0.95273 0.81668 0.96616 1.21217 1.34519 0.96805 1.01678 0.91710 1.25006 0.95372 0.97382 0.97047 1.69969 1.38655 1.11379 1.34051 0.86432 0.78152 0.79250 0.83544 1.19596 1.21013 1.21176 1.22731 1.00521 0.94033 0.93314 1.21843 0.98068 0.90699 0.83644 0.89172 1.86582 1.24867 1.84936 1.37509 1.22731 1.01117 0.88411 0.98048 1.60353 1.16267 1.10097 1.44077 1.22038 1.00402 0.92631 0.91575 1.21197 1.00323 0.93550 0.95173 0.91158 1.20404 1.01082 0.91442 0.98594 1.22220 0.99724 0.96667 0.98044 1.21997 1.02466 0.99306 0.94925 1.20407 1.00828 0.96123 0.95191 1.21630 1.00765 0.95231 0.97717 0.93471 0.97465 0.90688 0.95374 0.99371 0.93036 0.95622 0.91200 0.78559 0.94813 0.90695 0.84275 0.95532 0.91059 0.90973 0.89781 0.88177 0.88400 0.91326 0.91166 0.91830 0.91649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 9.14 60.07 0.55 1.29 16 2 N -0.53 -11.59 4.62 -244.37 -1.13 -12.72 16 3 C 0.19 5.07 4.72 -4.97 -0.02 5.05 16 4 C -0.50 -14.39 8.46 -34.44 -0.29 -14.68 16 5 H 0.06 1.85 7.12 -52.49 -0.37 1.48 16 6 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 7 N -0.90 -27.01 13.29 55.43 0.74 -26.28 16 8 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 9 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 C 0.02 0.42 4.62 -3.82 -0.02 0.40 16 13 C 0.12 1.69 3.02 -26.73 -0.08 1.61 16 14 H 0.09 1.33 6.55 -51.93 -0.34 0.99 16 15 O -0.54 -8.58 13.15 -35.23 -0.46 -9.04 16 16 C 0.03 0.31 5.32 -3.82 -0.02 0.29 16 17 N -0.68 -7.06 6.11 -113.77 -0.70 -7.75 16 18 C 0.06 0.56 5.08 -3.82 -0.02 0.54 16 19 C -0.08 -0.68 2.39 -90.40 -0.22 -0.90 16 20 H 0.07 0.60 8.13 -51.93 -0.42 0.18 16 21 C -0.08 -0.70 5.21 -28.18 -0.15 -0.84 16 22 C -0.15 -1.26 9.80 -35.90 -0.35 -1.61 16 23 C -0.17 -1.32 9.80 -35.90 -0.35 -1.68 16 24 C -0.09 -0.61 6.12 -28.18 -0.17 -0.78 16 25 C -0.12 -0.83 5.31 -26.52 -0.14 -0.97 16 26 H 0.05 0.83 6.47 -51.93 -0.34 0.49 16 27 H 0.01 0.14 8.14 -51.93 -0.42 -0.29 16 28 H 0.07 1.62 6.76 -51.93 -0.35 1.27 16 29 H 0.03 0.79 7.93 -51.93 -0.41 0.38 16 30 H -0.01 -0.32 8.12 -51.93 -0.42 -0.75 16 31 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 33 H 0.07 1.20 7.93 -51.93 -0.41 0.79 16 34 H 0.37 4.99 9.04 45.56 0.41 5.41 16 35 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.34 3.43 8.73 -39.30 -0.34 3.09 16 38 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.07 0.65 8.11 -51.93 -0.42 0.23 16 40 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 41 H 0.08 0.85 8.05 -51.93 -0.42 0.43 16 42 H 0.10 0.78 8.06 -52.49 -0.42 0.36 16 43 H 0.10 0.67 8.06 -52.49 -0.42 0.25 16 44 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 47 H 0.06 0.48 8.12 -51.93 -0.42 0.06 16 LS Contribution 371.17 15.07 5.59 5.59 Total: -1.00 -30.96 371.17 -10.40 -41.36 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -8.04 Total: 2.79 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: -1.38 Total: -10.87 kcal Atomic # 7 Polarization: -45.66 SS G_CDS: -1.09 Total: -46.74 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: -0.46 Total: -9.04 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.96 -10.40 -41.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574632594.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.065 kcal (2) G-P(sol) polarization free energy of solvation -30.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds