Wall clock time and date at job start Tue Mar 31 2020 06:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46762 * 2 1 4 4 N 1.46895 * 109.46850 * 119.99399 * 2 1 3 5 5 C 1.46901 * 111.00005 * 56.05194 * 4 2 1 6 6 C 1.46906 * 110.99984 * 180.02562 * 4 2 1 7 7 C 1.53000 * 109.47342 * 170.00302 * 6 4 2 8 8 C 1.53114 * 109.52381 * 174.99698 * 7 6 4 9 9 C 1.53032 * 109.28148 * 177.55916 * 8 7 6 10 10 N 1.46850 * 109.52393 * 300.82621 * 9 8 7 11 11 C 1.46895 * 111.00368 * 185.83627 * 10 9 8 12 12 H 1.09000 * 109.47107 * 186.73225 * 11 10 9 13 13 C 1.52999 * 109.47229 * 306.73669 * 11 10 9 14 14 C 1.53004 * 109.47076 * 66.73436 * 11 10 9 15 15 C 1.50696 * 109.47212 * 63.87258 * 14 11 10 16 16 H 1.08007 * 120.00200 * 359.97438 * 15 14 11 17 17 C 1.37881 * 120.00299 * 180.02562 * 15 14 11 18 18 N 1.31516 * 119.99849 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00184 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46914 * 90.00190 * 19 17 15 21 21 H 1.48497 * 109.47136 * 210.00416 * 19 17 15 22 22 H 1.48503 * 109.47043 * 330.00085 * 19 17 15 23 23 C 1.46846 * 111.19911 * 61.73673 * 10 9 8 24 24 C 1.53036 * 109.52465 * 298.26158 * 23 10 9 25 25 H 1.08996 * 109.47658 * 300.00546 * 1 2 3 26 26 H 1.09006 * 109.47091 * 60.00867 * 1 2 3 27 27 H 1.09000 * 109.47142 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47074 * 240.00182 * 2 1 3 29 29 H 1.09003 * 109.47210 * 59.99646 * 3 2 1 30 30 H 1.09002 * 109.46731 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47047 * 299.99965 * 3 2 1 32 32 H 1.08994 * 109.47153 * 183.94960 * 5 4 2 33 33 H 1.08997 * 109.47155 * 303.95296 * 5 4 2 34 34 H 1.09002 * 109.46794 * 63.95057 * 5 4 2 35 35 H 1.08997 * 109.47128 * 50.00034 * 6 4 2 36 36 H 1.09008 * 109.46452 * 290.00388 * 6 4 2 37 37 H 1.09003 * 109.57319 * 54.84050 * 7 6 4 38 38 H 1.09000 * 109.50770 * 297.50181 * 8 7 6 39 39 H 1.09000 * 109.50276 * 57.61829 * 8 7 6 40 40 H 1.09004 * 109.46012 * 60.83674 * 9 8 7 41 41 H 1.08998 * 109.46849 * 180.80787 * 9 8 7 42 42 H 1.08996 * 109.47058 * 300.00126 * 13 11 10 43 43 H 1.09004 * 109.47073 * 59.99469 * 13 11 10 44 44 H 1.08998 * 109.47376 * 179.97438 * 13 11 10 45 45 H 1.08994 * 109.47412 * 183.87721 * 14 11 10 46 46 H 1.09005 * 109.47249 * 303.87448 * 14 11 10 47 47 H 0.96993 * 120.00127 * 180.02562 * 18 17 15 48 48 H 1.08999 * 109.46160 * 178.24471 * 23 10 9 49 49 H 1.08998 * 109.46120 * 58.27553 * 23 10 9 50 50 H 1.09002 * 109.50313 * 299.23751 * 24 23 10 51 51 H 1.08997 * 109.50619 * 179.11967 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 1.4730 -2.0534 1.2817 6 6 3.4882 -0.7114 1.2338 7 6 3.9600 -1.2113 2.6007 8 6 5.4848 -1.3505 2.5963 9 6 5.9559 -1.7921 3.9837 10 7 5.5400 -0.7990 4.9823 11 6 6.0932 -1.1188 6.3050 12 1 5.6752 -0.4392 7.0477 13 6 5.7346 -2.5599 6.6730 14 6 7.6151 -0.9645 6.2721 15 6 7.9683 0.4756 6.0033 16 1 7.1856 1.2077 5.8689 17 6 9.2907 0.8587 5.9279 18 7 10.2438 -0.0329 6.0900 19 14 9.7286 2.6440 5.5954 20 1 9.8492 3.3722 6.8840 21 1 11.0209 2.7093 4.8669 22 1 8.6635 3.2696 4.7710 23 6 4.0772 -0.6824 5.0380 24 6 3.5500 -0.2077 3.6820 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.6765 1.9564 0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.7949 -2.5185 2.2134 33 1 0.3842 -2.0099 1.2544 34 1 1.8344 -2.6416 0.4381 35 1 3.8687 0.2957 1.0641 36 1 3.8611 -1.3768 0.4550 37 1 3.5064 -2.1798 2.8118 38 1 5.7801 -2.0955 1.8575 39 1 5.9370 -0.3907 2.3468 40 1 5.5141 -2.7585 4.2267 41 1 7.0425 -1.8782 3.9879 42 1 4.6505 -2.6698 6.6964 43 1 6.1527 -3.2394 5.9303 44 1 6.1455 -2.7973 7.6543 45 1 8.0319 -1.2677 7.2324 46 1 8.0271 -1.5930 5.4825 47 1 11.1741 0.2365 6.0373 48 1 3.7993 0.0373 5.8079 49 1 3.6442 -1.6540 5.2760 50 1 3.9718 0.7701 3.4496 51 1 2.4630 -0.1363 3.7188 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574778907.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:24 Heat of formation + Delta-G solvation = -8.706991 kcal Electronic energy + Delta-G solvation = -23883.098765 eV Core-core repulsion = 20816.720181 eV Total energy + Delta-G solvation = -3066.378584 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.40374 -38.09743 -35.06415 -32.72498 -31.82893 -30.47847 -29.82435 -28.25185 -27.23186 -25.97255 -24.75146 -23.12199 -22.68684 -21.51527 -20.03675 -19.52325 -18.55525 -16.30035 -16.08519 -15.55386 -15.19395 -14.78493 -14.51526 -14.39187 -14.12993 -13.77619 -13.49797 -13.27366 -12.82240 -12.51541 -12.39401 -12.32793 -12.26918 -12.08011 -11.80479 -11.69298 -11.51822 -11.50363 -11.32362 -11.13947 -10.98185 -10.76653 -10.69205 -10.48544 -10.37860 -10.19352 -10.04328 -9.80440 -9.70060 -9.07363 -8.88831 -8.36777 -8.20523 -7.32077 -5.83645 -3.80700 3.42344 3.48324 3.53943 3.76936 4.60511 4.66537 4.72480 4.78003 4.92468 5.09505 5.13521 5.27946 5.29426 5.35351 5.44763 5.53180 5.58438 5.60704 5.64421 5.67308 5.69510 5.71484 5.83689 5.86712 5.89404 5.92737 5.97311 6.02163 6.06755 6.10702 6.13955 6.18806 6.29558 6.36691 6.48212 6.56510 6.60487 6.67494 6.80394 6.84709 7.02023 7.04084 7.08592 7.63385 7.78282 8.04078 8.13601 8.19745 8.65299 9.25538 9.80616 11.28519 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.019628 B = 0.004049 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.172448 B = 6913.170739 C = 7776.297561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.076 3.924 3 C -0.148 4.148 4 N -0.534 5.534 5 C 0.019 3.981 6 C 0.057 3.943 7 C -0.081 4.081 8 C -0.110 4.110 9 C 0.060 3.940 10 N -0.509 5.509 11 C 0.086 3.914 12 H 0.067 0.933 13 C -0.183 4.183 14 C 0.030 3.970 15 C -0.486 4.486 16 H 0.061 0.939 17 C 0.049 3.951 18 N -0.906 5.906 19 Si 0.888 3.112 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.274 1.274 23 C 0.053 3.947 24 C -0.097 4.097 25 H 0.064 0.936 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.035 0.965 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.020 0.980 35 H 0.081 0.919 36 H 0.028 0.972 37 H 0.061 0.939 38 H 0.054 0.946 39 H 0.072 0.928 40 H 0.020 0.980 41 H 0.085 0.915 42 H 0.038 0.962 43 H 0.052 0.948 44 H 0.054 0.946 45 H 0.016 0.984 46 H 0.018 0.982 47 H 0.256 0.744 48 H 0.065 0.935 49 H 0.019 0.981 50 H 0.066 0.934 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.230 -3.403 -11.044 21.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.033 4.033 3 C -0.205 4.205 4 N -0.258 5.258 5 C -0.129 4.129 6 C -0.071 4.071 7 C -0.100 4.100 8 C -0.149 4.149 9 C -0.068 4.068 10 N -0.232 5.232 11 C -0.022 4.022 12 H 0.085 0.915 13 C -0.242 4.242 14 C -0.007 4.007 15 C -0.524 4.524 16 H 0.079 0.921 17 C -0.150 4.150 18 N -0.547 5.547 19 Si 0.717 3.283 20 H -0.211 1.211 21 H -0.216 1.216 22 H -0.199 1.199 23 C -0.076 4.076 24 C -0.134 4.134 25 H 0.083 0.917 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.053 0.947 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.039 0.961 35 H 0.099 0.901 36 H 0.047 0.953 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.091 0.909 40 H 0.038 0.962 41 H 0.103 0.897 42 H 0.057 0.943 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.035 0.965 46 H 0.036 0.964 47 H 0.066 0.934 48 H 0.084 0.916 49 H 0.037 0.963 50 H 0.084 0.916 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -18.028 -2.683 -10.791 21.182 hybrid contribution 0.364 -0.382 -0.648 0.835 sum -17.664 -3.065 -11.439 21.267 Atomic orbital electron populations 1.21914 0.94567 1.01807 1.02130 1.21594 0.95438 0.95249 0.90972 1.21911 1.01395 0.95151 1.02077 1.62034 1.08531 1.16781 1.38489 1.22475 1.00347 0.89165 1.00924 1.22301 0.86500 1.01443 0.96844 1.21202 0.95753 0.98908 0.94100 1.21611 0.94306 1.02008 0.96952 1.22017 1.01535 0.92161 0.91098 1.62025 1.07213 1.47221 1.06753 1.21900 0.99570 0.92001 0.88687 0.91457 1.22514 0.99559 1.00464 1.01633 1.19189 0.87057 0.97514 0.96902 1.21183 0.91342 0.94015 1.45899 0.92119 1.25005 0.96784 0.96950 0.96225 1.69966 0.99496 1.33252 1.51978 0.86650 0.77570 0.85979 0.78120 1.21065 1.21645 1.19893 1.22100 0.89371 0.98632 0.97467 1.21467 0.99903 0.98790 0.93287 0.91691 0.92474 0.92634 0.94715 0.91587 0.92252 0.92520 0.91090 0.91296 0.96117 0.90102 0.95346 0.92029 0.92684 0.90895 0.96185 0.89660 0.94275 0.92942 0.92727 0.96530 0.96372 0.93414 0.91637 0.96269 0.91574 0.91477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 8.84 37.16 0.33 -0.83 16 2 C 0.08 0.71 2.68 -67.71 -0.18 0.53 16 3 C -0.15 -1.36 8.99 37.16 0.33 -1.02 16 4 N -0.53 -5.69 4.15 -234.88 -0.97 -6.66 16 5 C 0.02 0.18 8.96 60.07 0.54 0.72 16 6 C 0.06 0.66 4.17 -3.82 -0.02 0.64 16 7 C -0.08 -1.06 2.17 -90.50 -0.20 -1.26 16 8 C -0.11 -1.67 5.38 -26.66 -0.14 -1.82 16 9 C 0.06 1.07 4.52 -3.83 -0.02 1.05 16 10 N -0.51 -9.79 4.28 -226.69 -0.97 -10.76 16 11 C 0.09 1.80 2.26 -67.71 -0.15 1.64 16 12 H 0.07 1.43 7.97 -51.93 -0.41 1.02 16 13 C -0.18 -3.24 8.43 37.16 0.31 -2.93 16 14 C 0.03 0.78 4.37 -27.88 -0.12 0.66 16 15 C -0.49 -13.75 8.81 -34.44 -0.30 -14.05 16 16 H 0.06 1.72 7.74 -52.48 -0.41 1.32 16 17 C 0.05 1.43 5.46 -17.82 -0.10 1.33 16 18 N -0.91 -27.55 13.29 55.43 0.74 -26.82 16 19 Si 0.89 22.29 29.54 -169.99 -5.02 17.26 16 20 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 22 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 23 C 0.05 0.85 5.15 -3.83 -0.02 0.83 16 24 C -0.10 -1.38 5.24 -26.65 -0.14 -1.52 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.42 6.26 -51.93 -0.33 0.09 16 28 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.58 6.20 -51.93 -0.32 0.26 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.71 6.37 -51.93 -0.33 0.38 16 33 H 0.07 0.58 6.01 -51.93 -0.31 0.27 16 34 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 35 H 0.08 0.98 5.83 -51.93 -0.30 0.68 16 36 H 0.03 0.33 8.12 -51.92 -0.42 -0.09 16 37 H 0.06 0.81 6.34 -51.93 -0.33 0.48 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.02 0.34 6.57 -51.93 -0.34 0.00 16 41 H 0.09 1.76 6.18 -51.93 -0.32 1.44 16 42 H 0.04 0.62 6.85 -51.93 -0.36 0.27 16 43 H 0.05 0.92 6.45 -51.93 -0.34 0.59 16 44 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.02 0.49 6.30 -51.93 -0.33 0.17 16 47 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 48 H 0.07 1.07 8.00 -51.93 -0.42 0.65 16 49 H 0.02 0.30 6.91 -51.93 -0.36 -0.06 16 50 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 51 H 0.07 0.90 7.84 -51.93 -0.41 0.50 16 LS Contribution 371.81 15.07 5.60 5.60 Total: -1.00 -29.60 371.81 -10.31 -39.91 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -9.81 Total: -2.53 kcal Atomic # 6 Polarization: -16.14 SS G_CDS: 0.12 Total: -16.01 kcal Atomic # 7 Polarization: -43.03 SS G_CDS: -1.21 Total: -44.24 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.60 -10.31 -39.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574778907.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.206 kcal (2) G-P(sol) polarization free energy of solvation -29.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds