Wall clock time and date at job start Tue Mar 31 2020 06:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.46646 * 2 1 4 4 N 1.46899 * 109.47216 * 119.99776 * 2 1 3 5 5 C 1.46895 * 110.99768 * 56.05196 * 4 2 1 6 6 C 1.46901 * 110.99726 * 180.02562 * 4 2 1 7 7 C 1.53003 * 109.46973 * 170.00141 * 6 4 2 8 8 C 1.53120 * 109.52272 * 294.68164 * 7 6 4 9 9 C 1.53042 * 109.27547 * 182.43833 * 8 7 6 10 10 N 1.46841 * 109.52162 * 59.18557 * 9 8 7 11 11 C 1.46896 * 110.99936 * 174.15806 * 10 9 8 12 12 H 1.09000 * 109.47494 * 173.59340 * 11 10 9 13 13 C 1.53005 * 109.47155 * 53.59702 * 11 10 9 14 14 C 1.52996 * 109.47223 * 293.59653 * 11 10 9 15 15 C 1.50700 * 109.47139 * 295.99842 * 14 11 10 16 16 H 1.08000 * 120.00154 * 359.97438 * 15 14 11 17 17 C 1.37880 * 119.99918 * 180.02562 * 15 14 11 18 18 N 1.31507 * 120.00161 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99757 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47278 * 89.99900 * 19 17 15 21 21 H 1.48498 * 109.46739 * 209.99967 * 19 17 15 22 22 H 1.48502 * 109.46864 * 329.99580 * 19 17 15 23 23 C 1.46852 * 111.19699 * 298.25221 * 10 9 8 24 24 C 1.53037 * 109.52145 * 61.74645 * 23 10 9 25 25 H 1.09004 * 109.47063 * 299.99943 * 1 2 3 26 26 H 1.09001 * 109.47739 * 60.00225 * 1 2 3 27 27 H 1.09004 * 109.46913 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47302 * 240.00168 * 2 1 3 29 29 H 1.09001 * 109.47703 * 299.99926 * 3 2 1 30 30 H 1.09004 * 109.47343 * 60.00229 * 3 2 1 31 31 H 1.09009 * 109.47074 * 179.97438 * 3 2 1 32 32 H 1.09009 * 109.47010 * 183.95413 * 5 4 2 33 33 H 1.08997 * 109.47134 * 303.94410 * 5 4 2 34 34 H 1.08994 * 109.47597 * 63.95475 * 5 4 2 35 35 H 1.09005 * 109.47492 * 50.00369 * 6 4 2 36 36 H 1.08993 * 109.47340 * 289.99939 * 6 4 2 37 37 H 1.09003 * 109.57422 * 54.84288 * 7 6 4 38 38 H 1.08993 * 109.50435 * 302.37988 * 8 7 6 39 39 H 1.09002 * 109.50323 * 62.50296 * 8 7 6 40 40 H 1.08996 * 109.46681 * 299.16389 * 9 8 7 41 41 H 1.09004 * 109.45508 * 179.19855 * 9 8 7 42 42 H 1.09001 * 109.47112 * 299.99973 * 13 11 10 43 43 H 1.08996 * 109.47398 * 60.00119 * 13 11 10 44 44 H 1.09005 * 109.46905 * 180.02562 * 13 11 10 45 45 H 1.09004 * 109.47524 * 55.99667 * 14 11 10 46 46 H 1.09009 * 109.47436 * 175.99674 * 14 11 10 47 47 H 0.97003 * 120.00441 * 180.02562 * 18 17 15 48 48 H 1.09002 * 109.46091 * 301.73144 * 23 10 9 49 49 H 1.08999 * 109.45307 * 181.75362 * 23 10 9 50 50 H 1.08998 * 109.49969 * 180.87950 * 24 23 10 51 51 H 1.08997 * 109.50449 * 60.75911 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 7 2.0196 -0.6924 1.1994 5 6 1.4730 -2.0534 1.2815 6 6 3.4881 -0.7115 1.2336 7 6 3.9600 -1.2114 2.6005 8 6 3.5501 -0.2078 3.6818 9 6 4.0773 -0.6826 5.0378 10 7 5.5401 -0.7990 4.9821 11 6 6.0935 -1.1189 6.3047 12 1 7.1626 -1.3113 6.2145 13 6 5.3969 -2.3620 6.8620 14 6 5.8658 0.0610 7.2518 15 6 6.6324 1.2594 6.7546 16 1 7.2233 1.1867 5.8536 17 6 6.5803 2.4484 7.4507 18 7 5.8612 2.5369 8.5482 19 14 7.5312 3.9337 6.8349 20 1 6.6746 4.7226 5.9134 21 1 7.9281 4.7803 7.9885 22 1 8.7467 3.4787 6.1133 23 6 5.9560 -1.7921 3.9834 24 6 5.4849 -1.3504 2.5960 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6765 1.9564 -0.8900 30 1 1.6765 1.9564 0.8900 31 1 3.1299 1.4426 0.0005 32 1 1.7949 -2.5187 2.2133 33 1 0.3843 -2.0100 1.2545 34 1 1.8343 -2.6416 0.4381 35 1 3.8687 0.2958 1.0640 36 1 3.8611 -1.3767 0.4549 37 1 3.5065 -2.1799 2.8116 38 1 3.9719 0.7700 3.4495 39 1 2.4630 -0.1364 3.7189 40 1 3.6445 -1.6542 5.2759 41 1 3.7993 0.0372 5.8078 42 1 4.3278 -2.1696 6.9523 43 1 5.5591 -3.2025 6.1874 44 1 5.8073 -2.5990 7.8436 45 1 4.8026 0.2989 7.2869 46 1 6.2122 -0.2030 8.2510 47 1 5.8241 3.3735 9.0378 48 1 5.5143 -2.7585 4.2264 49 1 7.0426 -1.8780 3.9876 50 1 5.7802 -2.0954 1.8572 51 1 5.9371 -0.3905 2.3466 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574778908.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:26 Heat of formation + Delta-G solvation = -8.378043 kcal Electronic energy + Delta-G solvation = -23948.030787 eV Core-core repulsion = 20881.666468 eV Total energy + Delta-G solvation = -3066.364320 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.39520 -38.08154 -35.06250 -32.71848 -31.82090 -30.34316 -29.92523 -28.24707 -27.21885 -25.94130 -24.71404 -23.08561 -22.74156 -21.51331 -19.93244 -19.59697 -18.54199 -16.28181 -16.08446 -15.54500 -15.12619 -14.84357 -14.48196 -14.38618 -14.12637 -13.72568 -13.51228 -13.19924 -12.84054 -12.51388 -12.39389 -12.34788 -12.26837 -11.93160 -11.83902 -11.70618 -11.64701 -11.34061 -11.30781 -11.15914 -10.94526 -10.75053 -10.66897 -10.51586 -10.34065 -10.17272 -10.07976 -9.78881 -9.66088 -9.07259 -8.88788 -8.33294 -8.19117 -7.32246 -5.82515 -3.79603 3.43647 3.49219 3.53390 3.79063 4.61241 4.66358 4.74771 4.81153 4.94429 5.10714 5.15744 5.24126 5.29578 5.37358 5.48156 5.54681 5.58296 5.62930 5.65540 5.68749 5.71727 5.73912 5.83043 5.87954 5.89705 5.93824 5.98396 6.02347 6.08173 6.10118 6.17242 6.19273 6.29353 6.38938 6.42775 6.56371 6.59305 6.74265 6.83764 6.90099 7.04534 7.07235 7.09927 7.64382 7.79224 8.04855 8.14098 8.20476 8.66134 9.26348 9.81651 11.29647 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.016498 B = 0.004369 C = 0.003824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.723767 B = 6407.280779 C = 7320.609989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.077 3.923 3 C -0.148 4.148 4 N -0.533 5.533 5 C 0.019 3.981 6 C 0.058 3.942 7 C -0.081 4.081 8 C -0.098 4.098 9 C 0.056 3.944 10 N -0.509 5.509 11 C 0.086 3.914 12 H 0.067 0.933 13 C -0.183 4.183 14 C 0.031 3.969 15 C -0.486 4.486 16 H 0.060 0.940 17 C 0.050 3.950 18 N -0.905 5.905 19 Si 0.889 3.111 20 H -0.283 1.283 21 H -0.291 1.291 22 H -0.276 1.276 23 C 0.056 3.944 24 C -0.109 4.109 25 H 0.065 0.935 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.034 0.966 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.019 0.981 35 H 0.081 0.919 36 H 0.026 0.974 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.019 0.981 41 H 0.085 0.915 42 H 0.052 0.948 43 H 0.037 0.963 44 H 0.054 0.946 45 H 0.019 0.981 46 H 0.016 0.984 47 H 0.256 0.744 48 H 0.021 0.979 49 H 0.066 0.934 50 H 0.053 0.947 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.418 -9.152 -16.522 20.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.032 4.032 3 C -0.206 4.206 4 N -0.258 5.258 5 C -0.129 4.129 6 C -0.070 4.070 7 C -0.100 4.100 8 C -0.135 4.135 9 C -0.072 4.072 10 N -0.232 5.232 11 C -0.022 4.022 12 H 0.085 0.915 13 C -0.242 4.242 14 C -0.006 4.006 15 C -0.525 4.525 16 H 0.078 0.922 17 C -0.149 4.149 18 N -0.546 5.546 19 Si 0.717 3.283 20 H -0.209 1.209 21 H -0.217 1.217 22 H -0.201 1.201 23 C -0.072 4.072 24 C -0.147 4.147 25 H 0.084 0.916 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.052 0.948 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.038 0.962 35 H 0.099 0.901 36 H 0.045 0.955 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.037 0.963 41 H 0.103 0.897 42 H 0.071 0.929 43 H 0.057 0.943 44 H 0.073 0.927 45 H 0.037 0.963 46 H 0.035 0.965 47 H 0.066 0.934 48 H 0.039 0.961 49 H 0.084 0.916 50 H 0.072 0.928 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.437 -8.301 -16.133 20.009 hybrid contribution 0.461 -0.442 -0.728 0.968 sum -7.977 -8.743 -16.860 20.599 Atomic orbital electron populations 1.21919 0.94537 1.01806 1.02212 1.21588 0.95488 0.95240 0.90841 1.21916 1.01309 0.95158 1.02190 1.62006 1.08430 1.16777 1.38545 1.22474 1.00442 0.89120 1.00834 1.22285 0.86666 1.01349 0.96684 1.21211 0.95256 0.99178 0.94385 1.21490 1.00169 0.98669 0.93211 1.22105 0.87987 0.99114 0.97974 1.62034 1.09350 1.45454 1.06384 1.21900 0.97239 0.94510 0.88504 0.91527 1.22516 1.01573 0.99251 1.00833 1.19189 0.97415 0.91262 0.92783 1.21172 1.27520 0.95003 1.08798 0.92171 1.24994 0.95998 0.98732 0.95157 1.69962 1.41506 1.26029 1.17118 0.86648 0.80363 0.83197 0.78058 1.20940 1.21703 1.20083 1.22015 0.99725 0.93151 0.92349 1.21587 0.95032 1.01656 0.96459 0.91587 0.92471 0.92647 0.94812 0.92533 0.91432 0.92330 0.91077 0.91241 0.96218 0.90112 0.95547 0.92023 0.91418 0.91386 0.96304 0.89712 0.92864 0.94344 0.92733 0.96296 0.96533 0.93407 0.96141 0.91557 0.92799 0.91060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 8.84 37.15 0.33 -0.92 16 2 C 0.08 0.75 2.68 -67.72 -0.18 0.57 16 3 C -0.15 -1.44 8.99 37.16 0.33 -1.11 16 4 N -0.53 -5.93 4.15 -234.89 -0.97 -6.90 16 5 C 0.02 0.19 8.96 60.06 0.54 0.73 16 6 C 0.06 0.67 4.17 -3.82 -0.02 0.66 16 7 C -0.08 -1.07 2.17 -90.49 -0.20 -1.27 16 8 C -0.10 -1.53 5.24 -26.65 -0.14 -1.67 16 9 C 0.06 1.02 4.53 -3.83 -0.02 1.00 16 10 N -0.51 -9.78 4.29 -226.69 -0.97 -10.75 16 11 C 0.09 1.80 2.26 -67.71 -0.15 1.64 16 12 H 0.07 1.41 7.98 -51.93 -0.41 1.00 16 13 C -0.18 -3.25 8.44 37.16 0.31 -2.93 16 14 C 0.03 0.79 4.37 -27.88 -0.12 0.66 16 15 C -0.49 -13.79 8.81 -34.44 -0.30 -14.10 16 16 H 0.06 1.71 7.74 -52.49 -0.41 1.30 16 17 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 18 N -0.90 -27.59 13.29 55.43 0.74 -26.85 16 19 Si 0.89 22.35 29.54 -169.99 -5.02 17.33 16 20 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 C 0.06 0.89 5.14 -3.83 -0.02 0.87 16 24 C -0.11 -1.49 5.38 -26.65 -0.14 -1.64 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.44 6.26 -51.93 -0.32 0.11 16 28 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.59 6.20 -51.92 -0.32 0.27 16 32 H 0.07 0.74 6.37 -51.92 -0.33 0.41 16 33 H 0.07 0.62 6.01 -51.93 -0.31 0.31 16 34 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 35 H 0.08 0.99 5.83 -51.93 -0.30 0.68 16 36 H 0.03 0.30 8.12 -51.93 -0.42 -0.12 16 37 H 0.06 0.81 6.34 -51.93 -0.33 0.48 16 38 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.07 1.04 7.84 -51.93 -0.41 0.63 16 40 H 0.02 0.33 6.57 -51.93 -0.34 -0.02 16 41 H 0.08 1.79 6.17 -51.93 -0.32 1.47 16 42 H 0.05 0.95 6.46 -51.93 -0.34 0.61 16 43 H 0.04 0.61 6.84 -51.93 -0.36 0.25 16 44 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.02 0.52 6.28 -51.93 -0.33 0.19 16 46 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 47 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 48 H 0.02 0.31 6.89 -51.93 -0.36 -0.04 16 49 H 0.07 1.05 8.01 -51.93 -0.42 0.63 16 50 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 51 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 371.78 15.07 5.60 5.60 Total: -1.00 -29.71 371.78 -10.31 -40.02 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -9.81 Total: -2.32 kcal Atomic # 6 Polarization: -16.25 SS G_CDS: 0.12 Total: -16.13 kcal Atomic # 7 Polarization: -43.30 SS G_CDS: -1.21 Total: -44.51 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.71 -10.31 -40.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574778908.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.642 kcal (2) G-P(sol) polarization free energy of solvation -29.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds