Wall clock time and date at job start Tue Mar 31 2020 05:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46504 * 109.47259 * 2 1 4 4 C 1.46497 * 120.00463 * 270.00419 * 3 2 1 5 5 C 1.34776 * 119.99735 * 89.99776 * 3 2 1 6 6 O 1.21282 * 119.99940 * 0.02562 * 5 3 2 7 7 C 1.50698 * 120.00035 * 179.97438 * 5 3 2 8 8 C 1.53006 * 109.47184 * 180.02562 * 7 5 3 9 9 N 1.46898 * 109.47006 * 180.02562 * 8 7 5 10 10 C 1.46846 * 111.00018 * 294.20961 * 9 8 7 11 11 C 1.53033 * 109.52460 * 174.16134 * 10 9 8 12 12 C 1.53124 * 109.27811 * 59.18358 * 11 10 9 13 13 C 1.52997 * 109.57677 * 182.41245 * 12 11 10 14 14 C 1.50704 * 109.46970 * 294.71143 * 13 12 11 15 15 H 1.08000 * 120.00035 * 0.02562 * 14 13 12 16 16 C 1.37872 * 120.00165 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99952 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00125 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47421 * 59.99912 * 18 16 14 20 20 H 1.48497 * 109.47438 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47121 * 300.00341 * 18 16 14 22 22 C 1.53125 * 109.15751 * 302.34732 * 12 11 10 23 23 C 1.46851 * 110.99682 * 170.00115 * 9 8 7 24 24 H 1.09004 * 109.47537 * 59.99559 * 1 2 3 25 25 H 1.09004 * 109.47040 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47623 * 299.99682 * 1 2 3 27 27 H 1.09004 * 109.47395 * 240.00436 * 2 1 3 28 28 H 1.08998 * 109.47295 * 120.00130 * 2 1 3 29 29 H 1.08999 * 109.46908 * 269.99915 * 4 3 2 30 30 H 1.09000 * 109.47065 * 29.99364 * 4 3 2 31 31 H 1.08990 * 109.47304 * 149.99656 * 4 3 2 32 32 H 1.09001 * 109.46665 * 60.00498 * 7 5 3 33 33 H 1.08993 * 109.47304 * 300.00054 * 7 5 3 34 34 H 1.09001 * 109.46801 * 300.00442 * 8 7 5 35 35 H 1.09001 * 109.46998 * 60.00038 * 8 7 5 36 36 H 1.09002 * 109.46555 * 294.18280 * 10 9 8 37 37 H 1.09001 * 109.46296 * 54.14881 * 10 9 8 38 38 H 1.08997 * 109.50475 * 299.23909 * 11 10 9 39 39 H 1.09002 * 109.50799 * 179.12007 * 11 10 9 40 40 H 1.08994 * 109.52258 * 62.24925 * 12 11 10 41 41 H 1.09004 * 109.47282 * 54.71039 * 13 12 11 42 42 H 1.09000 * 109.47154 * 174.71313 * 13 12 11 43 43 H 0.96997 * 120.00000 * 180.02562 * 17 16 14 44 44 H 1.09005 * 109.50073 * 297.71107 * 22 12 11 45 45 H 1.08991 * 109.50379 * 177.59621 * 22 12 11 46 46 H 1.08989 * 109.46428 * 305.85572 * 23 9 8 47 47 H 1.09002 * 109.45912 * 65.83533 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0720 -1.2686 5 6 2.2429 2.0165 1.1672 6 8 2.0411 1.4446 2.2175 7 6 2.7458 3.4371 1.1673 8 6 2.9162 3.9178 2.6099 9 7 3.4059 5.3027 2.6099 10 6 4.7600 5.3822 2.0473 11 6 5.1792 6.8492 1.9286 12 6 5.1434 7.4989 3.3147 13 6 5.5033 8.9812 3.1955 14 6 6.9326 9.1158 2.7371 15 1 7.5248 8.2324 2.5491 16 6 7.4838 10.3665 2.5566 17 7 6.7625 11.4422 2.7850 18 14 9.2552 10.5333 1.9876 19 1 9.4143 9.8769 0.6651 20 1 9.6047 11.9719 1.8720 21 1 10.1552 9.8835 2.9741 22 6 3.7347 7.3598 3.8987 23 6 3.3572 5.8780 3.9602 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.2919 1.9007 -1.5833 30 1 1.5816 1.6878 -2.0283 31 1 2.0954 3.1411 -1.1383 32 1 2.0281 4.0766 0.6533 33 1 3.7061 3.4826 0.6538 34 1 1.9561 3.8721 3.1238 35 1 3.6340 3.2782 3.1235 36 1 5.4563 4.8572 2.7012 37 1 4.7707 4.9204 1.0600 38 1 4.4913 7.3716 1.2639 39 1 6.1903 6.9073 1.5256 40 1 5.8595 7.0016 3.9687 41 1 4.8430 9.4584 2.4713 42 1 5.3863 9.4627 4.1664 43 1 7.1502 12.3222 2.6576 44 1 3.0240 7.8903 3.2649 45 1 3.7137 7.7826 4.9030 46 1 2.3493 5.7763 4.3622 47 1 4.0604 5.3508 4.6050 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581819207.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:51 Heat of formation + Delta-G solvation = -55.189522 kcal Electronic energy + Delta-G solvation = -22537.059018 eV Core-core repulsion = 19332.831706 eV Total energy + Delta-G solvation = -3204.227312 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.22024 -38.65358 -36.13966 -34.83293 -32.71858 -31.86462 -30.51571 -30.03332 -27.54224 -26.95963 -24.73747 -23.47314 -22.79407 -21.74512 -20.49627 -19.21080 -18.86936 -17.40099 -16.53717 -16.21366 -16.04397 -15.32865 -14.75230 -14.50685 -14.31417 -14.05233 -13.68734 -13.59697 -13.32549 -13.08410 -12.97867 -12.84195 -12.61318 -12.28559 -12.18254 -11.95220 -11.78328 -11.45975 -11.31172 -11.23571 -10.98088 -10.78181 -10.61664 -10.52068 -10.23506 -9.94838 -9.90824 -9.48937 -9.01756 -9.00115 -8.84796 -8.30064 -8.06482 -5.94954 -3.96377 2.44658 2.69744 3.34889 3.39626 3.41710 4.01487 4.48350 4.49167 4.72762 4.77116 4.83953 4.88303 5.02805 5.06798 5.16195 5.30364 5.35919 5.37604 5.40151 5.48625 5.52038 5.58908 5.60784 5.74632 5.83347 5.87598 5.91962 5.95607 6.04744 6.18510 6.22009 6.29104 6.49345 6.61750 6.71260 7.01307 7.06606 7.14061 7.23162 7.36284 7.42405 7.73562 7.90728 7.96363 8.06155 8.49240 9.10093 9.66813 11.16356 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030567 B = 0.002861 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.811334 B = 9783.068248 C =10337.521117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.110 3.890 3 N -0.622 5.622 4 C 0.076 3.924 5 C 0.516 3.484 6 O -0.541 6.541 7 C -0.136 4.136 8 C 0.071 3.929 9 N -0.538 5.538 10 C 0.052 3.948 11 C -0.099 4.099 12 C -0.082 4.082 13 C 0.028 3.972 14 C -0.514 4.514 15 H 0.054 0.946 16 C 0.056 3.944 17 N -0.896 5.896 18 Si 0.889 3.111 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.278 1.278 22 C -0.112 4.112 23 C 0.061 3.939 24 H 0.055 0.945 25 H 0.065 0.935 26 H 0.059 0.941 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.102 0.898 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.037 0.963 36 H 0.027 0.973 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.051 0.949 41 H 0.016 0.984 42 H 0.014 0.986 43 H 0.260 0.740 44 H 0.065 0.935 45 H 0.060 0.940 46 H 0.066 0.934 47 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.193 -20.344 -7.671 24.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.013 4.013 3 N -0.357 5.357 4 C -0.067 4.067 5 C 0.305 3.695 6 O -0.418 6.418 7 C -0.176 4.176 8 C -0.057 4.057 9 N -0.263 5.263 10 C -0.076 4.076 11 C -0.137 4.137 12 C -0.101 4.101 13 C -0.009 4.009 14 C -0.553 4.553 15 H 0.072 0.928 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.717 3.283 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.204 1.204 22 C -0.149 4.149 23 C -0.067 4.067 24 H 0.074 0.926 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.093 0.907 28 H 0.101 0.899 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.121 0.879 33 H 0.113 0.887 34 H 0.096 0.904 35 H 0.055 0.945 36 H 0.046 0.954 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.069 0.931 41 H 0.035 0.965 42 H 0.032 0.968 43 H 0.069 0.931 44 H 0.084 0.916 45 H 0.079 0.921 46 H 0.084 0.916 47 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -11.594 -20.173 -7.409 24.419 hybrid contribution 1.536 -0.284 -0.003 1.562 sum -10.059 -20.457 -7.412 23.971 Atomic orbital electron populations 1.22124 0.95892 1.02176 1.02381 1.21407 0.94445 0.82383 1.03035 1.47954 1.66800 1.14409 1.06554 1.21843 1.01423 0.98244 0.85212 1.20849 0.76836 0.88833 0.83024 1.90690 1.51921 1.68136 1.31011 1.21703 1.03340 0.92250 1.00329 1.21747 1.00873 0.88790 0.94309 1.61936 1.24407 1.17103 1.22858 1.22272 0.87824 0.99051 0.98424 1.21541 1.01423 0.92178 0.98535 1.21239 0.93842 1.00037 0.94944 1.19110 0.96086 0.88702 0.96958 1.21223 0.97505 0.91813 1.44710 0.92794 1.25018 0.97565 0.96120 0.95810 1.69956 1.36390 0.97665 1.49582 0.86716 0.85510 0.76856 0.79239 1.20312 1.21387 1.20375 1.21693 0.98719 0.93632 1.00888 1.22083 1.00025 0.96472 0.88103 0.92622 0.91647 0.92149 0.90697 0.89919 0.92359 0.91059 0.90400 0.87940 0.88717 0.90436 0.94470 0.95447 0.91656 0.91861 0.90977 0.93087 0.96520 0.96787 0.93061 0.91598 0.92134 0.91576 0.95330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.18 10.24 37.15 0.38 -0.80 16 2 C 0.11 0.85 6.13 -4.04 -0.02 0.82 16 3 N -0.62 -5.47 2.87 -181.58 -0.52 -5.99 16 4 C 0.08 0.43 10.24 59.85 0.61 1.04 16 5 C 0.52 5.98 7.67 -10.99 -0.08 5.90 16 6 O -0.54 -8.21 15.56 5.56 0.09 -8.12 16 7 C -0.14 -1.44 4.18 -27.88 -0.12 -1.55 16 8 C 0.07 0.93 4.25 -3.82 -0.02 0.92 16 9 N -0.54 -7.90 4.66 -234.67 -1.09 -9.00 16 10 C 0.05 0.79 5.29 -3.84 -0.02 0.77 16 11 C -0.10 -1.84 5.15 -26.65 -0.14 -1.97 16 12 C -0.08 -1.68 2.20 -90.49 -0.20 -1.88 16 13 C 0.03 0.73 4.45 -27.88 -0.12 0.61 16 14 C -0.51 -14.35 8.45 -34.44 -0.29 -14.64 16 15 H 0.05 1.46 7.08 -52.49 -0.37 1.09 16 16 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 18 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 C -0.11 -1.97 5.38 -26.65 -0.14 -2.11 16 23 C 0.06 0.93 5.46 -3.83 -0.02 0.91 16 24 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.41 8.07 -51.93 -0.42 -0.01 16 28 H 0.08 0.77 7.42 -51.93 -0.39 0.39 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.29 8.07 -51.93 -0.42 -0.13 16 31 H 0.08 0.41 6.44 -51.93 -0.33 0.08 16 32 H 0.10 0.98 7.40 -51.93 -0.38 0.59 16 33 H 0.09 0.91 6.39 -51.93 -0.33 0.58 16 34 H 0.08 1.04 7.94 -51.93 -0.41 0.63 16 35 H 0.04 0.53 8.08 -51.93 -0.42 0.11 16 36 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.86 6.21 -51.93 -0.32 0.53 16 38 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.07 1.42 7.06 -51.93 -0.37 1.05 16 40 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 44 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 45 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.07 0.91 8.01 -51.94 -0.42 0.50 16 47 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 365.98 15.07 5.52 5.52 Total: -1.00 -32.21 365.98 -9.37 -41.58 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -8.79 Total: -3.85 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: -0.28 Total: -10.50 kcal Atomic # 7 Polarization: -40.38 SS G_CDS: -0.88 Total: -41.26 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: 0.09 Total: -8.12 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.21 -9.37 -41.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581819207.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.605 kcal (2) G-P(sol) polarization free energy of solvation -32.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds