Wall clock time and date at job start Tue Mar 31 2020 05:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47644 * 2 1 4 4 C 1.53002 * 109.47022 * 119.99954 * 2 1 3 5 5 C 1.52999 * 109.47345 * 297.36651 * 4 2 1 6 6 N 1.46903 * 109.47065 * 77.54859 * 5 4 2 7 7 C 1.46893 * 110.99833 * 172.49959 * 6 5 4 8 8 C 1.53073 * 109.44184 * 84.80031 * 7 6 5 9 9 C 1.53191 * 109.29688 * 181.23582 * 8 7 6 10 10 N 1.46927 * 108.89271 * 305.57568 * 9 8 7 11 11 C 1.36944 * 120.62831 * 233.51641 * 10 9 8 12 12 H 1.07996 * 119.99370 * 148.89195 * 11 10 9 13 13 C 1.38811 * 119.99990 * 328.89405 * 11 10 9 14 14 N 1.31619 * 119.99916 * 341.39779 * 13 11 10 15 15 Si 1.86792 * 119.99834 * 161.40088 * 13 11 10 16 16 H 1.48504 * 109.47277 * 59.99496 * 15 13 11 17 17 H 1.48499 * 109.47333 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47303 * 299.99901 * 15 13 11 19 19 C 1.46925 * 118.73731 * 53.53606 * 10 9 8 20 20 C 1.53039 * 109.46080 * 205.00019 * 7 6 5 21 21 C 1.52996 * 109.47275 * 177.36416 * 4 2 1 22 22 C 1.53001 * 109.47446 * 185.38851 * 21 4 2 23 23 C 1.53001 * 109.47354 * 305.38683 * 21 4 2 24 24 H 1.09008 * 109.46783 * 81.21308 * 1 2 3 25 25 H 1.08999 * 109.47465 * 201.20950 * 1 2 3 26 26 H 1.09000 * 109.47217 * 321.21487 * 1 2 3 27 27 H 1.09003 * 109.47279 * 239.99899 * 2 1 3 28 28 H 1.09001 * 109.47632 * 170.63068 * 3 2 1 29 29 H 1.08999 * 109.47338 * 290.63896 * 3 2 1 30 30 H 1.09011 * 109.46896 * 50.63439 * 3 2 1 31 31 H 1.09005 * 109.46868 * 57.36815 * 4 2 1 32 32 H 1.08999 * 109.46878 * 317.55122 * 5 4 2 33 33 H 1.08994 * 109.47090 * 197.54942 * 5 4 2 34 34 H 1.00898 * 111.00066 * 296.45696 * 6 5 4 35 35 H 1.08997 * 109.46539 * 324.97393 * 7 6 5 36 36 H 1.08994 * 109.39285 * 61.35305 * 8 7 6 37 37 H 1.09007 * 109.62196 * 301.25271 * 8 7 6 38 38 H 1.08999 * 109.58682 * 185.71547 * 9 8 7 39 39 H 1.09003 * 109.58896 * 65.43372 * 9 8 7 40 40 H 0.97001 * 119.99995 * 180.02562 * 14 13 11 41 41 H 1.09000 * 109.58451 * 66.17959 * 19 10 9 42 42 H 1.08997 * 109.58141 * 186.46211 * 19 10 9 43 43 H 1.09002 * 109.50041 * 58.67913 * 20 7 6 44 44 H 1.09004 * 109.52389 * 298.59965 * 20 7 6 45 45 H 1.08999 * 109.47371 * 65.38297 * 21 4 2 46 46 H 1.08999 * 109.47288 * 59.99396 * 22 21 4 47 47 H 1.08998 * 109.47583 * 180.02562 * 22 21 4 48 48 H 1.09009 * 109.46765 * 300.00281 * 22 21 4 49 49 H 1.08998 * 109.47392 * 187.10581 * 23 21 4 50 50 H 1.09005 * 109.46936 * 307.10380 * 23 21 4 51 51 H 1.09002 * 109.47018 * 67.09807 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.5848 0.0372 2.4976 6 7 0.1697 -0.2570 2.7606 7 6 -0.2554 0.3097 4.0474 8 6 -0.6589 1.7732 3.8513 9 6 -1.0721 2.3696 5.2005 10 7 -2.1195 1.5263 5.7926 11 6 -3.3090 2.0716 6.1963 12 1 -4.2147 1.4851 6.1514 13 6 -3.3506 3.3781 6.6633 14 7 -2.2451 3.9689 7.0650 15 14 -4.9754 4.2978 6.7217 16 1 -5.9241 3.5713 7.6035 17 1 -4.7514 5.6650 7.2564 18 1 -5.5426 4.3882 5.3523 19 6 -1.8662 0.0869 5.9436 20 6 -1.4474 -0.4851 4.5856 21 6 3.5684 -0.7790 1.2166 22 6 4.0726 -1.6154 2.3944 23 6 4.0268 -1.4181 -0.0958 24 1 -0.3633 0.1570 -1.0157 25 1 -0.3634 -0.9580 0.3718 26 1 -0.3633 0.8011 0.6437 27 1 1.8933 -0.5139 -0.8900 28 1 3.1171 1.4470 0.1673 29 1 1.8197 1.9058 -0.9617 30 1 1.5466 2.0023 0.7946 31 1 1.6385 -1.7344 1.2731 32 1 1.7096 1.1082 2.3377 33 1 2.1856 -0.2751 3.3517 34 1 -0.4146 0.0756 2.0083 35 1 0.5687 0.2545 4.7586 36 1 -1.4975 1.8275 3.1572 37 1 0.1843 2.3345 3.4483 38 1 -1.4562 3.3788 5.0516 39 1 -0.2092 2.4015 5.8657 40 1 -2.2742 4.8818 7.3917 41 1 -1.0671 -0.0694 6.6681 42 1 -2.7736 -0.4096 6.2875 43 1 -1.1639 -1.5311 4.7033 44 1 -2.2805 -0.4104 3.8867 45 1 3.9719 0.2310 1.2891 46 1 3.6692 -2.6253 2.3219 47 1 5.1616 -1.6561 2.3714 48 1 3.7460 -1.1600 3.3295 49 1 5.1051 -1.5748 -0.0665 50 1 3.5239 -2.3761 -0.2284 51 1 3.7777 -0.7589 -0.9274 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000585742019.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:55 Heat of formation + Delta-G solvation = -18.626448 kcal Electronic energy + Delta-G solvation = -24029.604793 eV Core-core repulsion = 20962.796070 eV Total energy + Delta-G solvation = -3066.808724 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.44905 -39.08574 -36.20297 -34.57099 -33.72829 -31.62173 -31.27566 -28.75304 -28.21744 -27.72425 -26.41200 -24.11808 -23.69258 -22.69116 -21.92231 -20.97271 -19.51953 -18.74297 -17.27453 -16.87289 -16.17291 -15.86261 -15.58363 -15.38823 -15.22667 -14.98692 -14.75029 -14.60793 -14.26051 -13.87205 -13.63348 -13.45741 -13.34737 -13.10078 -12.99928 -12.97051 -12.69113 -12.65160 -12.54169 -12.44399 -12.22959 -12.07907 -12.04091 -11.94512 -11.78615 -11.68665 -11.45348 -11.23992 -11.16566 -10.94115 -10.71133 -10.56974 -9.17661 -8.66306 -7.90158 -5.37741 1.44990 1.47419 1.54543 2.49703 3.20665 3.30586 3.68251 3.81743 3.92006 3.97144 4.00644 4.18111 4.21021 4.39884 4.41985 4.47752 4.49534 4.59860 4.64128 4.69189 4.70011 4.78514 4.79594 4.85263 4.87501 4.94108 4.97038 5.03502 5.07055 5.09593 5.14827 5.16664 5.22123 5.24318 5.29055 5.33079 5.35580 5.39194 5.44024 5.44462 5.49048 5.59315 5.63393 5.66033 5.71409 6.23831 6.38065 6.61525 7.12788 7.83476 8.38129 9.15945 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.027898 B = 0.003642 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.397679 B = 7686.899656 C = 7960.153096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.089 4.089 3 C -0.152 4.152 4 C -0.067 4.067 5 C 0.057 3.943 6 N -0.689 5.689 7 C 0.104 3.896 8 C -0.149 4.149 9 C 0.186 3.814 10 N -0.609 5.609 11 C -0.270 4.270 12 H 0.064 0.936 13 C -0.047 4.047 14 N -0.933 5.933 15 Si 0.967 3.033 16 H -0.273 1.273 17 H -0.293 1.293 18 H -0.278 1.278 19 C 0.141 3.859 20 C -0.103 4.103 21 C -0.090 4.090 22 C -0.148 4.148 23 C -0.143 4.143 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.042 0.958 27 H 0.086 0.914 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.040 0.960 31 H 0.074 0.926 32 H 0.027 0.973 33 H 0.064 0.936 34 H 0.346 0.654 35 H 0.058 0.942 36 H 0.049 0.951 37 H 0.056 0.944 38 H 0.041 0.959 39 H -0.006 1.006 40 H 0.250 0.750 41 H 0.011 0.989 42 H 0.054 0.946 43 H 0.077 0.923 44 H 0.051 0.949 45 H 0.068 0.932 46 H 0.054 0.946 47 H 0.059 0.941 48 H 0.046 0.954 49 H 0.057 0.943 50 H 0.055 0.945 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.731 -10.150 -16.098 22.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.108 4.108 3 C -0.209 4.209 4 C -0.086 4.086 5 C -0.072 4.072 6 N -0.324 5.324 7 C -0.006 4.006 8 C -0.190 4.190 9 C 0.060 3.940 10 N -0.333 5.333 11 C -0.401 4.401 12 H 0.082 0.918 13 C -0.243 4.243 14 N -0.578 5.578 15 Si 0.794 3.206 16 H -0.199 1.199 17 H -0.219 1.219 18 H -0.204 1.204 19 C 0.015 3.985 20 C -0.143 4.143 21 C -0.108 4.108 22 C -0.206 4.206 23 C -0.200 4.200 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.061 0.939 27 H 0.104 0.896 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.059 0.941 31 H 0.092 0.908 32 H 0.046 0.954 33 H 0.082 0.918 34 H 0.171 0.829 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.060 0.940 39 H 0.012 0.988 40 H 0.059 0.941 41 H 0.029 0.971 42 H 0.073 0.927 43 H 0.096 0.904 44 H 0.070 0.930 45 H 0.086 0.914 46 H 0.073 0.927 47 H 0.078 0.922 48 H 0.065 0.935 49 H 0.076 0.924 50 H 0.074 0.926 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.866 -10.635 -15.782 22.427 hybrid contribution -0.867 1.936 0.458 2.170 sum 10.998 -8.700 -15.324 20.772 Atomic orbital electron populations 1.22066 0.95973 1.01592 1.01478 1.21191 0.95090 0.96162 0.98320 1.21994 1.01459 0.96118 1.01287 1.21257 0.94920 0.99329 0.93108 1.22202 0.88963 0.97719 0.98329 1.61025 1.04232 1.62955 1.04185 1.21281 0.96652 0.90957 0.91692 1.22631 0.99584 0.98186 0.98574 1.20383 0.89378 0.94023 0.90234 1.44274 1.15277 1.03434 1.70278 1.19453 0.86660 0.97464 1.36479 0.91825 1.25880 1.00013 1.00215 0.98147 1.70203 1.28676 1.13333 1.45611 0.85362 0.79804 0.77385 0.78034 1.19888 1.21907 1.20378 1.21078 0.97922 0.84448 0.95054 1.21790 0.96921 0.99012 0.96539 1.21116 0.94180 0.99668 0.95886 1.21894 1.00932 0.99964 0.97770 1.21847 1.01039 1.00720 0.96431 0.91952 0.91795 0.93881 0.89625 0.91783 0.92355 0.94082 0.90806 0.95449 0.91771 0.82867 0.92328 0.93209 0.92499 0.93999 0.98790 0.94074 0.97141 0.92723 0.90401 0.93029 0.91371 0.92719 0.92164 0.93456 0.92363 0.92628 0.92018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 7.62 71.98 0.55 -2.35 16 2 C -0.09 -1.53 2.31 -10.80 -0.02 -1.55 16 3 C -0.15 -2.67 8.44 71.98 0.61 -2.06 16 4 C -0.07 -1.26 1.42 -10.79 -0.02 -1.28 16 5 C 0.06 1.36 4.79 86.30 0.41 1.78 16 6 N -0.69 -18.92 5.96 -491.40 -2.93 -21.85 16 7 C 0.10 3.54 2.43 44.95 0.11 3.65 16 8 C -0.15 -5.77 5.34 30.68 0.16 -5.61 16 9 C 0.19 9.31 5.29 86.36 0.46 9.77 16 10 N -0.61 -31.75 2.98 -699.10 -2.08 -33.83 16 11 C -0.27 -15.35 9.53 84.03 0.80 -14.55 16 12 H 0.06 3.52 7.90 -2.91 -0.02 3.50 16 13 C -0.05 -2.66 4.84 84.86 0.41 -2.25 16 14 N -0.93 -56.57 11.54 21.65 0.25 -56.32 16 15 Si 0.97 45.58 29.59 68.60 2.03 47.61 16 16 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 17 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 18 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 19 C 0.14 6.11 6.52 86.36 0.56 6.67 16 20 C -0.10 -3.65 5.69 30.67 0.17 -3.48 16 21 C -0.09 -1.45 2.09 -10.79 -0.02 -1.47 16 22 C -0.15 -2.48 8.99 71.98 0.65 -1.84 16 23 C -0.14 -1.88 8.45 71.98 0.61 -1.27 16 24 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 25 H 0.06 1.26 7.40 -2.39 -0.02 1.24 16 26 H 0.04 0.95 6.01 -2.39 -0.01 0.93 16 27 H 0.09 1.26 6.35 -2.39 -0.02 1.25 16 28 H 0.06 1.04 6.19 -2.39 -0.01 1.02 16 29 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.04 0.86 6.33 -2.38 -0.02 0.85 16 31 H 0.07 1.51 8.08 -2.38 -0.02 1.49 16 32 H 0.03 0.70 5.24 -2.39 -0.01 0.69 16 33 H 0.06 1.63 5.72 -2.39 -0.01 1.61 16 34 H 0.35 9.25 4.09 -89.70 -0.37 8.89 16 35 H 0.06 2.10 7.68 -2.39 -0.02 2.08 16 36 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.06 2.03 7.57 -2.38 -0.02 2.01 16 38 H 0.04 2.35 6.35 -2.39 -0.02 2.33 16 39 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 40 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 41 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 42 H 0.05 2.32 7.93 -2.39 -0.02 2.30 16 43 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 44 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 45 H 0.07 1.14 6.58 -2.39 -0.02 1.13 16 46 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 47 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 48 H 0.05 0.90 6.28 -2.38 -0.01 0.88 16 49 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 50 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 51 H 0.06 0.75 6.72 -2.39 -0.02 0.74 16 Total: -1.00 -62.06 365.42 3.22 -58.84 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: 0.51 Total: 21.40 kcal Atomic # 6 Polarization: -21.29 SS G_CDS: 5.44 Total: -15.85 kcal Atomic # 7 Polarization: -107.24 SS G_CDS: -4.76 Total: -112.00 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -62.06 3.22 -58.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585742019.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.218 kcal (2) G-P(sol) polarization free energy of solvation -62.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds