Wall clock time and date at job start Tue Mar 31 2020 05:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42908 * 109.46942 * 2 1 4 4 C 1.42904 * 113.99903 * 180.02562 * 3 2 1 5 5 C 1.53776 * 113.61404 * 209.99559 * 4 3 2 6 6 C 1.53778 * 87.08209 * 220.01754 * 5 4 3 7 7 C 1.53004 * 113.61015 * 139.98172 * 6 5 4 8 8 N 1.46908 * 109.46687 * 176.53146 * 7 6 5 9 9 C 1.46954 * 110.99966 * 66.20300 * 8 7 6 10 10 C 1.53057 * 109.36263 * 183.18687 * 9 8 7 11 11 N 1.46956 * 109.36162 * 301.59585 * 10 9 8 12 12 C 1.46899 * 110.99677 * 183.18894 * 11 10 9 13 13 C 1.50698 * 109.47292 * 170.00200 * 12 11 10 14 14 H 1.07998 * 119.99743 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00183 * 180.02562 * 13 12 11 16 16 N 1.31510 * 120.00150 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99908 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47247 * 59.99530 * 17 15 13 19 19 H 1.48503 * 109.46810 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.46719 * 299.99556 * 17 15 13 21 21 C 1.46954 * 110.88042 * 59.32472 * 11 10 9 22 22 C 1.46956 * 110.99532 * 189.99895 * 8 7 6 23 23 C 1.53782 * 87.17140 * 25.39445 * 6 5 4 24 24 H 1.08999 * 109.47360 * 60.00248 * 1 2 3 25 25 H 1.08998 * 109.47190 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46812 * 300.00310 * 1 2 3 27 27 H 1.08998 * 109.47446 * 239.99969 * 2 1 3 28 28 H 1.08999 * 109.47360 * 119.99752 * 2 1 3 29 29 H 1.09002 * 112.84756 * 341.19270 * 4 3 2 30 30 H 1.09007 * 113.61415 * 105.47138 * 5 4 3 31 31 H 1.08998 * 113.68984 * 334.58137 * 5 4 3 32 32 H 1.08990 * 113.61754 * 270.79927 * 6 5 4 33 33 H 1.08997 * 109.47305 * 56.53617 * 7 6 5 34 34 H 1.09003 * 109.47140 * 296.52898 * 7 6 5 35 35 H 1.08997 * 109.49355 * 63.21813 * 9 8 7 36 36 H 1.09004 * 109.48943 * 303.15264 * 9 8 7 37 37 H 1.09002 * 109.48707 * 181.63135 * 10 9 8 38 38 H 1.09002 * 109.48655 * 61.56567 * 10 9 8 39 39 H 1.09003 * 109.47063 * 289.99903 * 12 11 10 40 40 H 1.09002 * 109.47208 * 50.00081 * 12 11 10 41 41 H 0.96999 * 120.00715 * 180.02562 * 16 15 13 42 42 H 1.08997 * 109.49355 * 60.64341 * 21 11 10 43 43 H 1.09003 * 109.49032 * 180.68883 * 21 11 10 44 44 H 1.09002 * 109.48908 * 56.84799 * 22 8 7 45 45 H 1.09002 * 109.49369 * 296.77670 * 22 8 7 46 46 H 1.08998 * 113.61944 * 89.15553 * 23 6 5 47 47 H 1.09004 * 113.61005 * 220.05832 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.9489 2.7252 0.7038 6 6 4.9896 2.8315 -0.4233 7 6 5.2307 4.2647 -0.9017 8 7 6.2946 4.2703 -1.9147 9 6 5.8667 3.5663 -3.1316 10 6 7.0272 3.5254 -4.1288 11 7 7.4513 4.8977 -4.4393 12 6 8.5151 4.9033 -5.4523 13 6 8.7527 6.3149 -5.9235 14 1 8.1712 7.1266 -5.5119 15 6 9.7116 6.5700 -6.8808 16 7 10.4193 5.5815 -7.3823 17 14 10.0065 8.3199 -7.4643 18 1 10.4158 9.1634 -6.3127 19 1 11.0818 8.3255 -8.4884 20 1 8.7565 8.8618 -8.0553 21 6 7.8792 5.6017 -3.2224 22 6 6.7187 5.6426 -2.2253 23 6 4.0038 2.0457 -1.3041 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.9280 0.5457 0.3229 30 1 4.3849 2.5317 1.6839 31 1 3.2313 3.5456 0.7143 32 1 5.9144 2.2934 -0.2159 33 1 5.5305 4.8843 -0.0565 34 1 4.3132 4.6619 -1.3360 35 1 5.0222 4.0915 -3.5778 36 1 5.5694 2.5488 -2.8776 37 1 6.7032 3.0291 -5.0436 38 1 7.8620 2.9765 -3.6929 39 1 9.4326 4.5061 -5.0179 40 1 8.2153 4.2837 -6.2975 41 1 11.0942 5.7610 -8.0555 42 1 8.7236 5.0765 -2.7762 43 1 8.1768 6.6191 -3.4764 44 1 7.0427 6.1389 -1.3105 45 1 5.8839 6.1915 -2.6612 46 1 3.3004 2.6792 -1.8444 47 1 4.4843 1.3044 -1.9427 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000586768125.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:08 Heat of formation + Delta-G solvation = -20.329981 kcal Electronic energy + Delta-G solvation = -22564.543779 eV Core-core repulsion = 19361.828090 eV Total energy + Delta-G solvation = -3202.715689 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.98182 -38.45767 -36.74182 -34.64754 -32.43568 -31.29210 -30.39314 -28.94584 -26.60059 -25.89189 -24.49512 -23.13557 -22.85404 -22.01823 -21.08807 -19.72212 -18.97327 -17.13716 -16.30340 -16.17245 -15.83048 -15.48189 -14.88532 -14.59835 -14.20635 -14.14826 -13.87075 -13.63783 -13.26099 -13.18497 -12.85090 -12.58588 -12.38220 -12.30389 -12.01254 -11.61306 -11.51107 -11.44234 -11.18920 -11.07720 -10.84499 -10.74154 -10.69178 -10.64299 -10.42835 -10.26707 -10.10030 -9.69792 -9.53142 -9.14117 -8.41288 -8.06531 -7.18125 -6.00204 -4.01626 3.34905 3.38705 3.41760 3.44432 4.08685 4.39868 4.44225 4.48104 4.62882 4.68359 4.77967 4.91476 5.00589 5.05695 5.09104 5.34684 5.36075 5.37184 5.42159 5.57906 5.58213 5.60035 5.62145 5.66586 5.70257 5.77693 5.80725 5.91128 5.94070 5.97304 6.05187 6.11994 6.25818 6.31298 6.49068 6.65214 6.73341 7.05817 7.24986 7.33491 7.39635 7.43840 7.82791 8.12813 8.25202 8.59112 9.05710 9.62380 11.10641 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.039302 B = 0.002712 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.267604 B =10321.870037 C =10620.844227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.376 6.376 4 C 0.061 3.939 5 C -0.130 4.130 6 C -0.101 4.101 7 C 0.068 3.932 8 N -0.538 5.538 9 C 0.057 3.943 10 C 0.056 3.944 11 N -0.539 5.539 12 C 0.194 3.806 13 C -0.507 4.507 14 H 0.062 0.938 15 C 0.055 3.945 16 N -0.899 5.899 17 Si 0.898 3.102 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.276 1.276 21 C 0.068 3.932 22 C 0.058 3.942 23 C -0.151 4.151 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.048 0.952 28 H 0.046 0.954 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.072 0.928 34 H 0.033 0.967 35 H 0.036 0.964 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.029 0.971 39 H -0.009 1.009 40 H 0.029 0.971 41 H 0.261 0.739 42 H 0.028 0.972 43 H 0.085 0.915 44 H 0.069 0.931 45 H 0.037 0.963 46 H 0.088 0.912 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.241 -9.833 16.701 24.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.296 6.296 4 C 0.003 3.997 5 C -0.168 4.168 6 C -0.120 4.120 7 C -0.060 4.060 8 N -0.263 5.263 9 C -0.071 4.071 10 C -0.073 4.073 11 N -0.264 5.264 12 C 0.069 3.931 13 C -0.546 4.546 14 H 0.080 0.920 15 C -0.147 4.147 16 N -0.539 5.539 17 Si 0.726 3.274 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.202 1.202 21 C -0.061 4.061 22 C -0.070 4.070 23 C -0.189 4.189 24 H 0.082 0.918 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.103 0.897 30 H 0.089 0.911 31 H 0.108 0.892 32 H 0.118 0.882 33 H 0.091 0.909 34 H 0.052 0.948 35 H 0.054 0.946 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.047 0.953 39 H 0.009 0.991 40 H 0.047 0.953 41 H 0.071 0.929 42 H 0.046 0.954 43 H 0.104 0.896 44 H 0.087 0.913 45 H 0.055 0.945 46 H 0.107 0.893 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -15.211 -9.707 16.550 24.485 hybrid contribution 0.454 0.610 -0.468 0.893 sum -14.756 -9.098 16.082 23.646 Atomic orbital electron populations 1.21750 0.93920 1.02144 1.03110 1.22490 0.95527 0.84211 0.99898 1.87959 1.20936 1.26050 1.94626 1.23749 0.80741 0.97853 0.97343 1.23236 0.97839 0.97757 0.97975 1.22311 0.97175 0.96568 0.95950 1.22007 0.93129 0.95593 0.95276 1.62184 1.36961 1.16701 1.10483 1.22296 0.96907 0.98377 0.89486 1.22078 0.96252 0.91896 0.97107 1.62274 1.41591 1.12858 1.09717 1.19691 0.86644 0.97722 0.89065 1.21120 1.18612 0.93017 1.21820 0.92005 1.24994 0.95944 0.97287 0.96428 1.69947 1.23590 1.31167 1.29151 0.86559 0.77758 0.84672 0.78396 1.20283 1.21381 1.20199 1.21982 0.94236 1.00492 0.89376 1.22235 0.98169 0.88315 0.98304 1.23706 0.98292 1.00053 0.96819 0.91815 0.91239 0.91954 0.93404 0.93578 0.89726 0.91054 0.89246 0.88235 0.90942 0.94844 0.94602 0.90645 0.91235 0.95283 0.99114 0.95299 0.92893 0.95380 0.89645 0.91270 0.94465 0.89329 0.91085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 10.28 37.16 0.38 -0.64 16 2 C 0.06 0.44 6.50 37.16 0.24 0.68 16 3 O -0.38 -3.96 10.36 -35.23 -0.36 -4.33 16 4 C 0.06 0.57 4.31 -25.83 -0.11 0.46 16 5 C -0.13 -1.18 7.47 -25.92 -0.19 -1.37 16 6 C -0.10 -1.04 3.50 -89.81 -0.31 -1.35 16 7 C 0.07 0.82 4.87 -3.82 -0.02 0.80 16 8 N -0.54 -8.10 4.71 -234.45 -1.10 -9.20 16 9 C 0.06 0.89 5.12 -3.77 -0.02 0.87 16 10 C 0.06 1.05 5.61 -3.76 -0.02 1.03 16 11 N -0.54 -12.05 4.70 -235.90 -1.11 -13.16 16 12 C 0.19 5.18 4.72 -4.98 -0.02 5.15 16 13 C -0.51 -14.43 8.47 -34.44 -0.29 -14.73 16 14 H 0.06 1.74 7.13 -52.49 -0.37 1.36 16 15 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 16 N -0.90 -27.02 13.29 55.43 0.74 -26.29 16 17 Si 0.90 21.84 29.54 -169.99 -5.02 16.81 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 C 0.07 1.37 5.43 -3.77 -0.02 1.35 16 22 C 0.06 0.94 5.61 -3.76 -0.02 0.92 16 23 C -0.15 -1.54 5.67 -25.83 -0.15 -1.68 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.08 0.68 7.87 -51.93 -0.41 0.27 16 30 H 0.07 0.57 8.14 -51.92 -0.42 0.14 16 31 H 0.09 0.85 8.10 -51.93 -0.42 0.43 16 32 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.07 0.81 8.03 -51.93 -0.42 0.40 16 34 H 0.03 0.42 7.85 -51.93 -0.41 0.01 16 35 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 1.02 5.04 -51.93 -0.26 0.76 16 37 H 0.07 1.29 8.07 -51.93 -0.42 0.87 16 38 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 39 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 40 H 0.03 0.82 8.03 -51.93 -0.42 0.40 16 41 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.09 1.83 6.79 -51.93 -0.35 1.48 16 44 H 0.07 0.99 8.07 -51.93 -0.42 0.57 16 45 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.09 1.00 7.92 -51.93 -0.41 0.59 16 47 H 0.07 0.71 7.22 -51.93 -0.37 0.33 16 LS Contribution 363.04 15.07 5.47 5.47 Total: -1.00 -30.59 363.04 -10.94 -41.53 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -8.89 Total: -3.82 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: -0.66 Total: -7.02 kcal Atomic # 7 Polarization: -47.17 SS G_CDS: -1.48 Total: -48.65 kcal Atomic # 8 Polarization: -3.96 SS G_CDS: -0.36 Total: -4.33 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.59 -10.94 -41.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586768125.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.202 kcal (2) G-P(sol) polarization free energy of solvation -30.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds