Wall clock time and date at job start Tue Mar 31 2020 05:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46902 * 110.99853 * 2 1 4 4 C 1.46900 * 111.00410 * 123.95481 * 2 1 3 5 5 H 1.08999 * 109.46619 * 42.34397 * 4 2 1 6 6 C 1.52995 * 109.47178 * 282.33888 * 4 2 1 7 7 N 1.46501 * 109.46893 * 65.79238 * 6 4 2 8 8 C 1.34783 * 119.99814 * 187.24191 * 7 6 4 9 9 O 1.21276 * 120.00150 * 359.97438 * 8 7 6 10 10 C 1.50701 * 119.99854 * 180.02562 * 8 7 6 11 11 C 1.53002 * 109.47093 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.47106 * 179.97438 * 11 10 8 13 13 C 1.52998 * 109.46818 * 179.97438 * 12 11 10 14 14 C 1.50710 * 109.46836 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99840 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99813 * 179.97438 * 14 13 12 17 17 N 1.31509 * 119.99991 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99883 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46966 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.47184 * 120.00249 * 18 16 14 21 21 H 1.48501 * 109.47336 * 240.00396 * 18 16 14 22 22 C 1.53003 * 109.47148 * 162.33955 * 4 2 1 23 23 C 1.53001 * 117.49771 * 2.30574 * 22 4 2 24 24 C 1.53002 * 117.49759 * 293.64703 * 22 4 2 25 25 H 1.09000 * 109.47129 * 313.83193 * 1 2 3 26 26 H 1.08990 * 109.47477 * 73.83933 * 1 2 3 27 27 H 1.09007 * 109.46509 * 193.83679 * 1 2 3 28 28 H 1.08998 * 109.47416 * 176.31289 * 3 2 1 29 29 H 1.09003 * 109.47098 * 296.31570 * 3 2 1 30 30 H 1.09003 * 109.46810 * 56.30723 * 3 2 1 31 31 H 1.09004 * 109.47434 * 305.79089 * 6 4 2 32 32 H 1.08997 * 109.47048 * 185.78881 * 6 4 2 33 33 H 0.97000 * 120.00374 * 7.51076 * 7 6 4 34 34 H 1.09004 * 109.47092 * 299.99238 * 10 8 7 35 35 H 1.08997 * 109.47168 * 59.99680 * 10 8 7 36 36 H 1.09004 * 109.46763 * 299.99726 * 11 10 8 37 37 H 1.08997 * 109.47141 * 59.99949 * 11 10 8 38 38 H 1.08992 * 109.47313 * 300.00053 * 12 11 10 39 39 H 1.09006 * 109.47121 * 60.00313 * 12 11 10 40 40 H 1.08997 * 109.47404 * 299.99738 * 13 12 11 41 41 H 1.08997 * 109.47112 * 60.00361 * 13 12 11 42 42 H 0.97003 * 120.00350 * 179.97438 * 17 16 14 43 43 H 1.08996 * 115.55005 * 147.97300 * 22 4 2 44 44 H 1.08999 * 117.50031 * 359.97438 * 23 22 4 45 45 H 1.09000 * 117.50061 * 145.01987 * 23 22 4 46 46 H 1.09000 * 117.49357 * 214.98052 * 24 22 4 47 47 H 1.08995 * 117.49960 * 359.97412 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 1 1.4166 -1.6816 1.2580 6 6 1.8906 0.0752 2.4112 7 7 0.4791 0.2973 2.7347 8 6 0.1407 1.1355 3.7345 9 8 1.0047 1.7055 4.3665 10 6 -1.3112 1.3636 4.0676 11 6 -1.4183 2.3501 5.2322 12 6 -2.8924 2.5821 5.5701 13 6 -2.9994 3.5681 6.7351 14 6 -4.4514 3.7962 7.0683 15 1 -5.2208 3.2883 6.5057 16 6 -4.7975 4.6525 8.0921 17 7 -3.8606 5.2705 8.7774 18 14 -6.5972 4.9357 8.5046 19 1 -7.4470 4.1289 7.5925 20 1 -6.8532 4.5276 9.9092 21 1 -6.9221 6.3754 8.3404 22 6 3.4616 -1.1197 0.8794 23 6 4.0977 -0.5975 -0.4104 24 6 3.7638 -2.0846 -0.2689 25 1 -0.3633 0.7117 0.7413 26 1 -0.3634 0.2860 -0.9869 27 1 -0.3632 -0.9979 0.2458 28 1 3.0830 1.3432 0.0661 29 1 1.7003 1.8739 -0.9212 30 1 1.5933 1.9149 0.8551 31 1 2.3828 1.0351 2.2543 32 1 2.3737 -0.4506 3.2347 33 1 -0.2118 -0.1618 2.2320 34 1 -1.8240 1.7720 3.1968 35 1 -1.7721 0.4171 4.3501 36 1 -0.9056 1.9413 6.1030 37 1 -0.9573 3.2966 4.9502 38 1 -3.4047 2.9910 4.6993 39 1 -3.3539 1.6357 5.8520 40 1 -2.4872 3.1588 7.6058 41 1 -2.5379 4.5146 6.4536 42 1 -4.1041 5.8732 9.4975 43 1 4.0942 -1.1775 1.7651 44 1 3.4718 -0.0022 -1.0752 45 1 5.1490 -0.3120 -0.3733 46 1 4.5955 -2.7770 -0.1387 47 1 2.9182 -2.4677 -0.8401 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588300374.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:01 Heat of formation + Delta-G solvation = -16.858307 kcal Electronic energy + Delta-G solvation = -22184.675648 eV Core-core repulsion = 18982.110501 eV Total energy + Delta-G solvation = -3202.565146 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.45938 -39.01650 -36.10020 -34.92754 -34.10411 -32.62543 -30.48141 -29.28072 -28.20283 -25.95820 -24.48843 -22.90105 -22.55194 -21.98940 -20.69910 -19.99214 -19.57734 -17.08095 -16.67204 -16.33097 -16.15768 -15.97541 -15.50723 -14.87250 -14.72517 -14.41936 -14.13035 -13.75505 -13.47315 -13.10417 -12.68621 -12.52335 -12.41801 -12.24960 -12.10944 -11.90403 -11.69888 -11.61578 -11.55129 -11.31798 -10.99698 -10.56879 -10.54519 -10.48464 -10.41583 -10.30223 -9.83945 -9.61828 -9.27712 -9.22347 -8.97211 -8.63162 -8.30739 -5.95184 -3.97650 2.70119 3.03859 3.33061 3.38698 3.40199 3.44159 3.62882 4.30954 4.46865 4.49319 4.59614 4.77646 4.81442 4.87783 4.95362 5.03113 5.11094 5.19804 5.30267 5.31635 5.35276 5.39457 5.40465 5.41641 5.52091 5.60153 5.64453 5.70414 5.84537 5.85266 5.97733 6.13123 6.24477 6.30279 6.54263 6.59479 6.62463 6.83645 7.01595 7.19804 7.36226 7.74532 7.90197 8.06251 8.23172 8.48053 9.10259 9.65981 11.16182 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.045329 B = 0.002335 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.562664 B =11986.106593 C =12214.213378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 N -0.533 5.533 3 C 0.008 3.992 4 C 0.101 3.899 5 H 0.090 0.910 6 C 0.087 3.913 7 N -0.742 5.742 8 C 0.510 3.490 9 O -0.533 6.533 10 C -0.139 4.139 11 C -0.103 4.103 12 C -0.110 4.110 13 C 0.019 3.981 14 C -0.519 4.519 15 H 0.055 0.945 16 C 0.054 3.946 17 N -0.895 5.895 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.153 4.153 23 C -0.173 4.173 24 C -0.167 4.167 25 H 0.041 0.959 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.036 0.964 31 H 0.078 0.922 32 H 0.067 0.933 33 H 0.399 0.601 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.046 0.954 39 H 0.046 0.954 40 H 0.016 0.984 41 H 0.016 0.984 42 H 0.259 0.741 43 H 0.107 0.893 44 H 0.115 0.885 45 H 0.086 0.914 46 H 0.088 0.912 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.599 -15.129 -21.341 29.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 N -0.256 5.256 3 C -0.139 4.139 4 C -0.008 4.008 5 H 0.108 0.892 6 C -0.038 4.038 7 N -0.398 5.398 8 C 0.297 3.703 9 O -0.409 6.409 10 C -0.179 4.179 11 C -0.141 4.141 12 C -0.148 4.148 13 C -0.018 4.018 14 C -0.558 4.558 15 H 0.073 0.927 16 C -0.147 4.147 17 N -0.535 5.535 18 Si 0.719 3.281 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.210 1.210 22 C -0.172 4.172 23 C -0.210 4.210 24 C -0.204 4.204 25 H 0.059 0.941 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.054 0.946 31 H 0.096 0.904 32 H 0.085 0.915 33 H 0.236 0.764 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.069 0.931 43 H 0.125 0.875 44 H 0.133 0.867 45 H 0.105 0.895 46 H 0.107 0.893 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 14.401 -14.811 -21.170 29.579 hybrid contribution -1.545 0.349 0.858 1.801 sum 12.856 -14.462 -20.312 28.053 Atomic orbital electron populations 1.22676 0.87441 1.01558 1.02271 1.62226 1.07765 1.14368 1.41284 1.22676 1.01533 0.88485 1.01255 1.21512 0.95132 0.96452 0.87683 0.89248 1.22049 0.83122 1.01311 0.97361 1.46461 1.08131 1.48107 1.37145 1.21138 0.92395 0.77965 0.78787 1.90707 1.51874 1.48184 1.50137 1.21803 0.91602 1.02650 1.01828 1.21447 0.98956 0.97860 0.95816 1.21647 0.92596 1.00305 1.00209 1.19104 0.96684 0.93732 0.92271 1.21320 0.92560 1.25696 1.16178 0.92706 1.25052 0.97274 0.96001 0.96333 1.69983 1.32150 1.29451 1.21871 0.86551 0.85458 0.77898 0.78168 1.19785 1.21055 1.21050 1.22166 0.95097 1.06301 0.93641 1.23156 1.00653 0.97243 0.99948 1.22877 1.03127 0.92850 1.01565 0.94053 0.90970 0.91458 0.90205 0.91369 0.94571 0.90360 0.91453 0.76446 0.89290 0.89175 0.91803 0.91851 0.93497 0.93482 0.96585 0.96596 0.93097 0.87468 0.86730 0.89536 0.89319 0.88572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 8.27 60.06 0.50 0.55 16 2 N -0.53 -3.78 3.99 -243.18 -0.97 -4.75 16 3 C 0.01 0.06 7.28 60.07 0.44 0.50 16 4 C 0.10 0.72 2.34 -67.71 -0.16 0.57 16 5 H 0.09 0.60 7.67 -51.93 -0.40 0.20 16 6 C 0.09 0.82 4.45 -4.04 -0.02 0.80 16 7 N -0.74 -7.44 4.35 -60.29 -0.26 -7.70 16 8 C 0.51 7.14 7.83 -10.98 -0.09 7.06 16 9 O -0.53 -9.86 15.95 5.56 0.09 -9.77 16 10 C -0.14 -1.86 5.70 -27.88 -0.16 -2.02 16 11 C -0.10 -1.87 4.50 -26.73 -0.12 -1.99 16 12 C -0.11 -2.29 5.15 -26.73 -0.14 -2.42 16 13 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 14 C -0.52 -15.06 9.11 -34.43 -0.31 -15.38 16 15 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 16 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -27.69 13.29 55.43 0.74 -26.95 16 18 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 22 C -0.15 -1.04 5.51 -90.62 -0.50 -1.54 16 23 C -0.17 -1.14 8.32 -26.69 -0.22 -1.36 16 24 C -0.17 -1.06 10.24 -26.69 -0.27 -1.33 16 25 H 0.04 0.29 5.85 -51.93 -0.30 -0.01 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.35 7.54 -51.93 -0.39 -0.05 16 28 H 0.08 0.58 5.54 -51.93 -0.29 0.29 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.04 0.34 6.48 -51.93 -0.34 0.00 16 31 H 0.08 0.86 6.08 -51.93 -0.32 0.55 16 32 H 0.07 0.69 8.13 -51.93 -0.42 0.26 16 33 H 0.40 3.02 5.82 -40.82 -0.24 2.78 16 34 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 37 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 38 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 43 H 0.11 0.72 8.06 -51.93 -0.42 0.30 16 44 H 0.11 0.81 5.51 -51.93 -0.29 0.52 16 45 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 47 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 366.07 15.07 5.52 5.52 Total: -1.00 -33.40 366.07 -9.63 -43.03 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -8.43 Total: -1.68 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: -1.29 Total: -14.68 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: -0.50 Total: -39.41 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.09 Total: -9.77 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.40 -9.63 -43.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588300374.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.176 kcal (2) G-P(sol) polarization free energy of solvation -33.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds