Wall clock time and date at job start Tue Mar 31 2020 05:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46893 * 111.00062 * 2 1 4 4 C 1.46899 * 110.99897 * 123.95336 * 2 1 3 5 5 H 1.08996 * 109.47037 * 198.34858 * 4 2 1 6 6 C 1.53003 * 109.47121 * 318.34977 * 4 2 1 7 7 N 1.46503 * 109.47024 * 287.18315 * 6 4 2 8 8 C 1.34773 * 119.99847 * 172.04673 * 7 6 4 9 9 O 1.21285 * 120.00068 * 359.97438 * 8 7 6 10 10 C 1.50704 * 119.99865 * 179.97438 * 8 7 6 11 11 C 1.53002 * 109.47019 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.46975 * 180.02562 * 11 10 8 13 13 C 1.52993 * 109.47217 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.47645 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99659 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00555 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00207 * 179.97438 * 16 14 13 18 18 Si 1.86807 * 119.99879 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.46478 * 90.00350 * 18 16 14 20 20 H 1.48498 * 109.47275 * 210.00218 * 18 16 14 21 21 H 1.48499 * 109.47021 * 330.00879 * 18 16 14 22 22 C 1.53000 * 109.47134 * 78.34895 * 4 2 1 23 23 C 1.53000 * 117.49899 * 357.37627 * 22 4 2 24 24 C 1.53003 * 117.49776 * 66.03641 * 22 4 2 25 25 H 1.08997 * 109.46542 * 305.44783 * 1 2 3 26 26 H 1.08999 * 109.47195 * 65.44435 * 1 2 3 27 27 H 1.08992 * 109.47267 * 185.44818 * 1 2 3 28 28 H 1.09000 * 109.47354 * 172.88719 * 3 2 1 29 29 H 1.09004 * 109.47193 * 292.88689 * 3 2 1 30 30 H 1.08995 * 109.47531 * 52.88574 * 3 2 1 31 31 H 1.08993 * 109.46990 * 47.18156 * 6 4 2 32 32 H 1.09002 * 109.46796 * 167.18523 * 6 4 2 33 33 H 0.97004 * 119.99858 * 352.04130 * 7 6 4 34 34 H 1.08994 * 109.47377 * 300.00085 * 10 8 7 35 35 H 1.09003 * 109.47094 * 59.99868 * 10 8 7 36 36 H 1.09003 * 109.47142 * 300.00155 * 11 10 8 37 37 H 1.08997 * 109.46726 * 60.00343 * 11 10 8 38 38 H 1.09003 * 109.47059 * 299.99895 * 12 11 10 39 39 H 1.09003 * 109.47370 * 59.99967 * 12 11 10 40 40 H 1.09008 * 109.47106 * 299.99995 * 13 12 11 41 41 H 1.09003 * 109.47280 * 59.99541 * 13 12 11 42 42 H 0.96997 * 119.99842 * 179.97438 * 17 16 14 43 43 H 1.09002 * 115.54737 * 211.70653 * 22 4 2 44 44 H 1.09000 * 117.49657 * 215.00503 * 23 22 4 45 45 H 1.09000 * 117.50146 * 0.02562 * 23 22 4 46 46 H 1.08992 * 117.49843 * 359.97438 * 24 22 4 47 47 H 1.09002 * 117.49564 * 144.99710 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 1 3.0363 -0.4918 1.3097 6 6 1.1719 -0.4524 2.3884 7 7 1.4951 0.8963 2.8604 8 6 0.7760 1.4523 3.8555 9 8 -0.1388 0.8362 4.3599 10 6 1.1088 2.8395 4.3414 11 6 0.1485 3.2297 5.4668 12 6 0.4859 4.6383 5.9596 13 6 -0.4740 5.0283 7.0854 14 6 -0.1421 6.4159 7.5705 15 1 0.6724 6.9646 7.1211 16 6 -0.8774 6.9846 8.5887 17 7 -0.5874 8.1954 9.0123 18 14 -2.2857 6.0353 9.3665 19 1 -1.7744 5.2428 10.5136 20 1 -3.3201 6.9874 9.8446 21 1 -2.8820 5.1209 8.3597 22 6 1.9063 -2.2621 0.8301 23 6 1.2650 -2.6736 -0.4967 24 6 2.7782 -2.8032 -0.3048 25 1 -0.3632 0.5960 0.8372 26 1 -0.3633 0.4271 -0.9347 27 1 -0.3633 -1.0229 0.0976 28 1 3.0777 1.3451 0.1272 29 1 1.7526 1.8538 -0.9468 30 1 1.5468 1.9328 0.8194 31 1 0.1103 -0.5085 2.1479 32 1 1.4066 -1.1764 3.1687 33 1 2.2266 1.3891 2.4567 34 1 2.1328 2.8579 4.7144 35 1 1.0094 3.5466 3.5178 36 1 -0.8754 3.2114 5.0933 37 1 0.2476 2.5227 6.2904 38 1 1.5098 4.6570 6.3330 39 1 0.3866 5.3451 5.1358 40 1 -1.4981 5.0094 6.7125 41 1 -0.3742 4.3214 7.9091 42 1 -1.1050 8.5956 9.7284 43 1 1.7415 -2.9100 1.6910 44 1 0.6784 -3.5922 -0.5086 45 1 0.9071 -1.8785 -1.1508 46 1 3.4149 -2.0934 -0.8325 47 1 3.1870 -3.8072 -0.1904 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588300375.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:03 Heat of formation + Delta-G solvation = -17.856469 kcal Electronic energy + Delta-G solvation = -22193.314417 eV Core-core repulsion = 18990.705987 eV Total energy + Delta-G solvation = -3202.608430 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.43702 -39.05923 -36.10526 -35.07542 -34.23683 -32.58875 -30.63361 -29.51468 -28.20295 -26.22282 -24.56473 -22.85992 -22.57328 -21.82516 -20.67394 -20.03162 -19.60009 -17.12787 -16.73835 -16.62415 -16.28171 -16.04316 -15.60415 -14.93775 -14.74601 -14.22876 -14.18170 -13.80133 -13.54012 -13.18818 -12.67325 -12.59307 -12.49421 -12.32742 -12.12407 -12.06324 -11.98621 -11.75114 -11.63020 -11.38188 -11.11955 -10.74671 -10.61895 -10.54766 -10.31115 -10.00138 -9.82687 -9.65337 -9.44055 -9.31441 -9.12122 -8.68049 -8.49456 -6.00638 -3.98111 2.63311 2.98541 3.35235 3.37117 3.42193 3.48311 3.60007 4.27900 4.44079 4.49994 4.58375 4.73967 4.79422 4.85881 4.91003 5.01166 5.07927 5.17255 5.21410 5.25730 5.30448 5.34108 5.35300 5.40220 5.50531 5.55131 5.63359 5.66085 5.76879 5.83214 5.97729 6.01540 6.13753 6.19612 6.40421 6.56728 6.59866 6.67287 6.81274 6.98501 7.30306 7.37762 7.50544 7.84644 8.16449 8.58181 9.04214 9.62736 11.12820 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.040380 B = 0.002459 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.243451 B =11385.140567 C =11620.510537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.534 5.534 3 C 0.012 3.988 4 C 0.101 3.899 5 H 0.089 0.911 6 C 0.085 3.915 7 N -0.739 5.739 8 C 0.511 3.489 9 O -0.536 6.536 10 C -0.139 4.139 11 C -0.106 4.106 12 C -0.102 4.102 13 C -0.016 4.016 14 C -0.519 4.519 15 H 0.071 0.929 16 C 0.064 3.936 17 N -0.906 5.906 18 Si 0.880 3.120 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.265 1.265 22 C -0.153 4.153 23 C -0.170 4.170 24 C -0.168 4.168 25 H 0.036 0.964 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.036 0.964 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.398 0.602 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.015 0.985 41 H 0.011 0.989 42 H 0.262 0.738 43 H 0.107 0.893 44 H 0.085 0.915 45 H 0.113 0.887 46 H 0.095 0.905 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.428 -21.172 -21.980 31.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.257 5.257 3 C -0.136 4.136 4 C -0.008 4.008 5 H 0.107 0.893 6 C -0.040 4.040 7 N -0.394 5.394 8 C 0.298 3.702 9 O -0.411 6.411 10 C -0.179 4.179 11 C -0.144 4.144 12 C -0.140 4.140 13 C -0.053 4.053 14 C -0.557 4.557 15 H 0.089 0.911 16 C -0.137 4.137 17 N -0.545 5.545 18 Si 0.707 3.293 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.189 1.189 22 C -0.172 4.172 23 C -0.207 4.207 24 C -0.205 4.205 25 H 0.054 0.946 26 H 0.087 0.913 27 H 0.094 0.906 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.055 0.945 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.234 0.766 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.034 0.966 41 H 0.029 0.971 42 H 0.072 0.928 43 H 0.125 0.875 44 H 0.104 0.896 45 H 0.131 0.869 46 H 0.114 0.886 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.855 -21.704 -21.916 31.597 hybrid contribution -0.593 0.244 1.092 1.267 sum 6.262 -21.460 -20.824 30.551 Atomic orbital electron populations 1.22592 0.87171 1.02548 1.01246 1.62222 1.08438 1.13707 1.41305 1.22603 1.00172 0.88932 1.01871 1.21489 0.98703 0.92824 0.87769 0.89311 1.22118 1.01361 0.84242 0.96269 1.46317 1.36699 1.17668 1.38750 1.21111 0.81582 0.88911 0.78583 1.90704 1.29961 1.64114 1.56355 1.21782 1.02641 0.92414 1.01060 1.21477 0.98219 0.98437 0.96230 1.21475 1.00221 0.93159 0.99137 1.19578 0.95049 0.96917 0.93750 1.21178 1.17197 0.98983 1.18349 0.91115 1.25047 0.97276 0.94798 0.96532 1.69921 1.40961 1.14780 1.28848 0.86770 0.82559 0.80007 0.79944 1.20316 1.21446 1.18916 1.22179 1.07248 0.94339 0.93428 1.23077 0.95460 1.02791 0.99345 1.22867 0.94048 1.01671 1.01871 0.94577 0.91341 0.90574 0.91368 0.91028 0.94511 0.90059 0.91452 0.76634 0.88997 0.89125 0.91846 0.91802 0.92867 0.92858 0.96638 0.97061 0.92819 0.87533 0.89615 0.86897 0.88615 0.89320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 7.17 60.07 0.43 0.52 16 2 N -0.53 -3.64 3.82 -243.19 -0.93 -4.57 16 3 C 0.01 0.08 8.68 60.06 0.52 0.60 16 4 C 0.10 0.69 2.23 -67.71 -0.15 0.54 16 5 H 0.09 0.57 7.65 -51.93 -0.40 0.17 16 6 C 0.09 0.76 4.60 -4.04 -0.02 0.75 16 7 N -0.74 -6.99 4.47 -60.29 -0.27 -7.26 16 8 C 0.51 6.78 7.83 -10.99 -0.09 6.69 16 9 O -0.54 -9.43 15.94 5.55 0.09 -9.34 16 10 C -0.14 -1.75 5.70 -27.88 -0.16 -1.91 16 11 C -0.11 -1.79 4.50 -26.73 -0.12 -1.91 16 12 C -0.10 -2.02 5.15 -26.74 -0.14 -2.16 16 13 C -0.02 -0.39 4.04 -27.89 -0.11 -0.50 16 14 C -0.52 -15.17 9.66 -34.44 -0.33 -15.50 16 15 H 0.07 2.19 7.99 -52.48 -0.42 1.77 16 16 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 17 N -0.91 -28.47 13.96 55.43 0.77 -27.69 16 18 Si 0.88 22.47 27.47 -169.99 -4.67 17.81 16 19 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 21 H -0.26 -6.57 6.54 56.52 0.37 -6.20 16 22 C -0.15 -1.01 5.51 -90.62 -0.50 -1.50 16 23 C -0.17 -1.09 8.54 -26.69 -0.23 -1.32 16 24 C -0.17 -1.03 10.24 -26.69 -0.27 -1.30 16 25 H 0.04 0.33 6.57 -51.93 -0.34 -0.01 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.08 0.54 6.06 -51.93 -0.31 0.23 16 28 H 0.07 0.34 7.78 -51.93 -0.40 -0.06 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.04 0.24 5.97 -51.93 -0.31 -0.07 16 31 H 0.08 0.85 5.62 -51.93 -0.29 0.56 16 32 H 0.07 0.65 7.97 -51.93 -0.41 0.24 16 33 H 0.40 2.80 6.57 -40.82 -0.27 2.53 16 34 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.06 1.14 8.10 -51.93 -0.42 0.72 16 37 H 0.06 1.14 8.10 -51.93 -0.42 0.72 16 38 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.02 0.39 7.20 -51.92 -0.37 0.01 16 41 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 42 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 43 H 0.11 0.69 7.96 -51.93 -0.41 0.28 16 44 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.11 0.79 5.77 -51.93 -0.30 0.49 16 46 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 364.21 15.07 5.49 5.49 Total: -1.00 -33.59 364.21 -9.23 -42.82 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -8.45 Total: -2.07 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: -1.26 Total: -15.18 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: -0.43 Total: -39.52 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.09 Total: -9.34 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.67 Total: 17.81 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.59 -9.23 -42.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588300375.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.964 kcal (2) G-P(sol) polarization free energy of solvation -33.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds