Wall clock time and date at job start Tue Mar 31 2020 05:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46847 * 111.00065 * 2 1 4 4 C 1.53036 * 109.52487 * 185.83561 * 3 2 1 5 5 C 1.53122 * 109.28039 * 300.82074 * 4 3 2 6 6 C 1.52996 * 109.52174 * 177.55663 * 5 4 3 7 7 N 1.46496 * 109.47060 * 65.31926 * 6 5 4 8 8 C 1.34780 * 120.00253 * 179.97438 * 7 6 5 9 9 O 1.21285 * 119.99562 * 359.97438 * 8 7 6 10 10 C 1.50698 * 120.00239 * 179.97438 * 8 7 6 11 11 C 1.53004 * 109.46971 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.46816 * 180.02562 * 11 10 8 13 13 C 1.53000 * 109.47002 * 179.97438 * 12 11 10 14 14 C 1.50698 * 109.47462 * 180.02562 * 13 12 11 15 15 H 1.08007 * 119.99632 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00494 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99602 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00540 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.46798 * 89.99434 * 18 16 14 20 20 H 1.48495 * 109.47266 * 210.00019 * 18 16 14 21 21 H 1.48502 * 109.46493 * 330.00060 * 18 16 14 22 22 C 1.53123 * 109.15961 * 57.65379 * 5 4 3 23 23 C 1.46844 * 110.99853 * 124.20646 * 2 1 3 24 24 H 1.09002 * 109.47401 * 295.79144 * 1 2 3 25 25 H 1.09001 * 109.46874 * 175.79157 * 1 2 3 26 26 H 1.09004 * 109.46970 * 55.79290 * 1 2 3 27 27 H 1.09005 * 109.46161 * 305.85426 * 3 2 1 28 28 H 1.09006 * 109.46014 * 65.82215 * 3 2 1 29 29 H 1.08995 * 109.50452 * 180.87530 * 4 3 2 30 30 H 1.08997 * 109.53423 * 60.78138 * 4 3 2 31 31 H 1.08995 * 109.52195 * 297.75126 * 5 4 3 32 32 H 1.09004 * 109.46994 * 185.31369 * 6 5 4 33 33 H 1.08994 * 109.47428 * 305.31237 * 6 5 4 34 34 H 0.97004 * 120.00220 * 359.97438 * 7 6 5 35 35 H 1.08996 * 109.47175 * 300.00048 * 10 8 7 36 36 H 1.08995 * 109.46854 * 60.00659 * 10 8 7 37 37 H 1.08996 * 109.46943 * 299.99863 * 11 10 8 38 38 H 1.08995 * 109.46813 * 59.99966 * 11 10 8 39 39 H 1.08994 * 109.47389 * 300.00110 * 12 11 10 40 40 H 1.09005 * 109.47011 * 60.00256 * 12 11 10 41 41 H 1.09002 * 109.47662 * 300.00342 * 13 12 11 42 42 H 1.09004 * 109.47246 * 60.00155 * 13 12 11 43 43 H 0.97003 * 119.99829 * 180.02562 * 17 16 14 44 44 H 1.09001 * 109.50326 * 182.41022 * 22 5 4 45 45 H 1.08994 * 109.50594 * 62.28334 * 22 5 4 46 46 H 1.09005 * 109.46673 * 294.18102 * 23 2 1 47 47 H 1.09003 * 109.46587 * 54.14643 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3342 -0.1467 5 6 4.1188 0.5370 1.0145 6 6 5.6361 0.4450 0.8407 7 7 6.2226 1.7826 0.9540 8 6 7.5550 1.9467 0.8340 9 8 8.2684 0.9867 0.6327 10 6 8.1583 3.3228 0.9500 11 6 9.6756 3.2307 0.7762 12 6 10.2881 4.6277 0.8946 13 6 11.8055 4.5356 0.7215 14 6 12.4090 5.9115 0.8387 15 1 11.7736 6.7663 1.0183 16 6 13.7719 6.0793 0.7157 17 7 14.5454 5.0385 0.4965 18 14 14.5199 7.7850 0.8603 19 1 14.8649 8.0554 2.2791 20 1 15.7483 7.8588 0.0293 21 1 13.5407 8.7964 0.3875 22 6 3.5182 -0.8715 1.0210 23 6 1.9952 -0.7707 1.1338 24 1 -0.3634 0.4471 0.9253 25 1 -0.3633 -1.0249 -0.0754 26 1 -0.3633 0.5778 -0.8499 27 1 1.5634 1.9257 -0.8330 28 1 1.7324 1.8608 0.9376 29 1 3.9099 2.3512 -0.1310 30 1 3.7820 0.8572 -1.0905 31 1 3.8886 1.0355 1.9561 32 1 6.0519 -0.2007 1.6142 33 1 5.8648 0.0298 -0.1408 34 1 5.6520 2.5504 1.1153 35 1 7.7428 3.9680 0.1760 36 1 7.9292 3.7383 1.9312 37 1 10.0914 2.5853 1.5499 38 1 9.9043 2.8152 -0.2051 39 1 9.8724 5.2735 0.1212 40 1 10.0593 5.0427 1.8763 41 1 12.2210 3.8899 1.4952 42 1 12.0347 4.1204 -0.2599 43 1 15.5044 5.1565 0.4104 44 1 3.9098 -1.4302 1.8710 45 1 3.7813 -1.3836 0.0955 46 1 1.7324 -0.2708 2.0661 47 1 1.5634 -1.7715 1.1243 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588338040.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:46 Heat of formation + Delta-G solvation = -73.953544 kcal Electronic energy + Delta-G solvation = -21552.882926 eV Core-core repulsion = 18347.841944 eV Total energy + Delta-G solvation = -3205.040981 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.03920 -39.15029 -35.90180 -34.80641 -33.23022 -32.55425 -31.30653 -29.89682 -28.27989 -25.87102 -24.73956 -23.64764 -22.49940 -21.73759 -20.46683 -19.97252 -19.84003 -16.91635 -16.26036 -16.13508 -15.94226 -15.75887 -15.52465 -15.09188 -14.83684 -14.43242 -14.02250 -13.89266 -13.53501 -13.34601 -12.86460 -12.78178 -12.57240 -12.46491 -12.10779 -11.91230 -11.65798 -11.62369 -11.57287 -11.10502 -10.95956 -10.89649 -10.75715 -10.50625 -10.47884 -10.37591 -9.75906 -9.58006 -9.18760 -9.11184 -8.95192 -8.80473 -8.28125 -5.92900 -3.95345 2.78817 3.17189 3.35513 3.41426 3.44694 3.46007 4.25085 4.30735 4.38851 4.50843 4.67922 4.82171 4.85105 4.94498 4.96103 5.04411 5.12331 5.19452 5.28712 5.36440 5.37909 5.40433 5.40988 5.42608 5.45062 5.51705 5.65706 5.69690 5.76238 5.91093 5.99465 6.17940 6.34106 6.37715 6.58268 6.59217 6.60914 6.87936 7.06053 7.23388 7.48238 7.76840 7.93241 8.08795 8.32343 8.50550 9.12382 9.68100 11.18385 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.050764 B = 0.002030 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.442187 B =13789.278891 C =14175.192251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.544 5.544 3 C 0.055 3.945 4 C -0.113 4.113 5 C -0.100 4.100 6 C 0.125 3.875 7 N -0.739 5.739 8 C 0.511 3.489 9 O -0.536 6.536 10 C -0.139 4.139 11 C -0.103 4.103 12 C -0.110 4.110 13 C 0.019 3.981 14 C -0.520 4.520 15 H 0.054 0.946 16 C 0.055 3.945 17 N -0.895 5.895 18 Si 0.891 3.109 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 C -0.110 4.110 23 C 0.056 3.944 24 H 0.024 0.976 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.033 0.967 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.398 0.602 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.046 0.954 40 H 0.046 0.954 41 H 0.016 0.984 42 H 0.016 0.984 43 H 0.260 0.740 44 H 0.071 0.929 45 H 0.076 0.924 46 H 0.033 0.967 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.654 -9.985 1.231 32.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.269 5.269 3 C -0.073 4.073 4 C -0.151 4.151 5 C -0.119 4.119 6 C 0.001 3.999 7 N -0.392 5.392 8 C 0.298 3.702 9 O -0.412 6.412 10 C -0.179 4.179 11 C -0.141 4.141 12 C -0.148 4.148 13 C -0.018 4.018 14 C -0.558 4.558 15 H 0.072 0.928 16 C -0.146 4.146 17 N -0.534 5.534 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.148 4.148 23 C -0.072 4.072 24 H 0.043 0.957 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.094 0.906 28 H 0.051 0.949 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.232 0.768 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.069 0.931 44 H 0.090 0.910 45 H 0.095 0.905 46 H 0.051 0.949 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -29.784 -10.973 0.621 31.747 hybrid contribution -0.159 1.685 0.928 1.930 sum -29.944 -9.288 1.549 31.389 Atomic orbital electron populations 1.22356 0.87221 1.02307 1.00474 1.61924 1.07587 1.13926 1.43481 1.22110 0.95648 0.88998 1.00523 1.21672 0.93978 1.00315 0.99131 1.21452 0.93972 0.97217 0.99272 1.21326 0.91528 0.84773 1.02277 1.46115 1.07926 1.09844 1.75334 1.21096 0.81482 0.92218 0.75404 1.90708 1.60466 1.42463 1.47536 1.21790 0.99197 0.93101 1.03784 1.21446 0.90585 0.99326 1.02774 1.21649 0.99538 0.93595 1.00010 1.19102 0.88614 0.96844 0.97233 1.21288 0.92076 0.93718 1.48744 0.92769 1.25048 0.97448 0.96648 0.95477 1.69980 1.04484 1.29310 1.49667 0.86607 0.78719 0.84798 0.77934 1.20733 1.21262 1.19944 1.21569 0.94087 0.96020 1.03151 1.22089 0.95475 0.98303 0.91289 0.95748 0.91312 0.91314 0.90608 0.94906 0.91253 0.90602 0.90811 0.91619 0.91432 0.76798 0.89209 0.89240 0.91840 0.91812 0.93494 0.93515 0.96587 0.96568 0.93068 0.90997 0.90518 0.94893 0.90571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.59 60.07 0.58 0.71 16 2 N -0.54 -3.72 4.91 -242.95 -1.19 -4.91 16 3 C 0.06 0.35 5.46 -3.83 -0.02 0.32 16 4 C -0.11 -0.74 5.22 -26.65 -0.14 -0.87 16 5 C -0.10 -0.67 2.29 -90.50 -0.21 -0.87 16 6 C 0.12 1.15 5.07 -4.05 -0.02 1.13 16 7 N -0.74 -7.35 5.31 -60.30 -0.32 -7.67 16 8 C 0.51 7.21 7.83 -10.98 -0.09 7.12 16 9 O -0.54 -10.00 15.98 5.55 0.09 -9.92 16 10 C -0.14 -1.87 5.70 -27.88 -0.16 -2.03 16 11 C -0.10 -1.89 4.50 -26.73 -0.12 -2.01 16 12 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 13 C 0.02 0.51 4.97 -27.88 -0.14 0.38 16 14 C -0.52 -15.15 9.11 -34.44 -0.31 -15.46 16 15 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 16 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 17 N -0.89 -27.74 13.29 55.43 0.74 -27.00 16 18 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 21 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 22 C -0.11 -0.70 5.38 -26.65 -0.14 -0.84 16 23 C 0.06 0.35 5.46 -3.83 -0.02 0.33 16 24 H 0.02 0.12 8.14 -51.93 -0.42 -0.30 16 25 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 27 H 0.08 0.45 8.09 -51.93 -0.42 0.03 16 28 H 0.03 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.07 0.40 7.27 -51.93 -0.38 0.02 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.40 2.83 7.69 -40.82 -0.31 2.51 16 35 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 38 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 39 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 44 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.03 0.20 8.14 -51.93 -0.42 -0.22 16 47 H 0.08 0.42 8.12 -51.93 -0.42 0.00 16 LS Contribution 373.34 15.07 5.63 5.63 Total: -1.00 -34.11 373.34 -10.21 -44.32 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -9.10 Total: -4.47 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: -1.03 Total: -13.02 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: -0.78 Total: -39.58 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.09 Total: -9.92 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.11 -10.21 -44.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588338040.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.636 kcal (2) G-P(sol) polarization free energy of solvation -34.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds