Wall clock time and date at job start Tue Mar 31 2020 05:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46900 * 109.46951 * 2 1 4 4 C 1.46905 * 110.99729 * 163.42800 * 3 2 1 5 5 C 1.52997 * 109.46882 * 190.00014 * 4 3 2 6 6 N 1.46504 * 109.47005 * 179.97438 * 5 4 3 7 7 C 1.34774 * 119.99957 * 179.97438 * 6 5 4 8 8 O 1.21276 * 120.00080 * 0.02562 * 7 6 5 9 9 C 1.50704 * 119.99755 * 180.02562 * 7 6 5 10 10 C 1.53006 * 109.46975 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47147 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.46976 * 180.02562 * 11 10 9 13 13 C 1.50704 * 109.46803 * 180.02562 * 12 11 10 14 14 H 1.07992 * 120.00250 * 359.97438 * 13 12 11 15 15 C 1.37883 * 119.99667 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00121 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99806 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47311 * 90.00545 * 17 15 13 19 19 H 1.48507 * 109.47260 * 210.00616 * 17 15 13 20 20 H 1.48499 * 109.47050 * 330.00103 * 17 15 13 21 21 C 1.46894 * 110.99935 * 287.37812 * 3 2 1 22 22 C 1.52998 * 117.49766 * 138.31776 * 21 3 2 23 23 C 1.53001 * 117.49916 * 69.65889 * 21 3 2 24 24 H 1.09004 * 109.47388 * 73.64648 * 1 2 3 25 25 H 1.09007 * 109.47350 * 193.64486 * 1 2 3 26 26 H 1.09002 * 109.47371 * 313.64274 * 1 2 3 27 27 H 1.09005 * 109.47097 * 240.00057 * 2 1 3 28 28 H 1.08998 * 109.47155 * 120.00510 * 2 1 3 29 29 H 1.08996 * 109.47261 * 70.00021 * 4 3 2 30 30 H 1.08998 * 109.46987 * 309.99984 * 4 3 2 31 31 H 1.08998 * 109.47285 * 299.99788 * 5 4 3 32 32 H 1.08996 * 109.47167 * 59.99949 * 5 4 3 33 33 H 0.97003 * 119.99819 * 0.02562 * 6 5 4 34 34 H 1.08998 * 109.47120 * 300.00187 * 9 7 6 35 35 H 1.08996 * 109.47207 * 60.00272 * 9 7 6 36 36 H 1.08997 * 109.46750 * 300.00206 * 10 9 7 37 37 H 1.09006 * 109.47022 * 60.00084 * 10 9 7 38 38 H 1.08998 * 109.47149 * 300.00152 * 11 10 9 39 39 H 1.08996 * 109.47006 * 60.00131 * 11 10 9 40 40 H 1.08998 * 109.47285 * 300.00043 * 12 11 10 41 41 H 1.08996 * 109.47167 * 60.00205 * 12 11 10 42 42 H 0.97000 * 120.00028 * 179.97438 * 16 15 13 43 43 H 1.09002 * 115.55651 * 283.98517 * 21 3 2 44 44 H 1.09008 * 117.49793 * 359.97438 * 22 21 3 45 45 H 1.09007 * 117.50508 * 145.01987 * 22 21 3 46 46 H 1.09001 * 117.49643 * 214.97862 * 23 21 3 47 47 H 1.08998 * 117.49625 * 359.97319 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4344 1.4432 0.3912 5 6 3.8402 2.9002 0.6219 6 7 5.2510 2.9582 1.0126 7 6 5.8310 4.1475 1.2684 8 8 5.1850 5.1697 1.1756 9 6 7.2824 4.2071 1.6697 10 6 7.6883 5.6642 1.9006 11 6 9.1616 5.7247 2.3086 12 6 9.5672 7.1817 2.5401 13 6 11.0186 7.2413 2.9414 14 1 11.5939 6.3312 3.0236 15 6 11.6118 8.4581 3.2036 16 7 10.9110 9.5664 3.1040 17 14 13.4107 8.5320 3.7018 18 1 14.2556 8.6623 2.4877 19 1 13.6315 9.7040 4.5867 20 1 13.7748 7.2885 4.4273 21 6 1.8089 2.0178 -1.3088 22 6 1.3131 3.4652 -1.3220 23 6 0.3681 2.3285 -1.7195 24 1 -0.3634 0.2894 -0.9861 25 1 -0.3634 -0.9987 0.2424 26 1 -0.3634 0.7093 0.7437 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 4.0484 1.0161 -0.4017 30 1 3.5809 0.8753 1.3100 31 1 3.6937 3.4680 -0.2969 32 1 3.2262 3.3272 1.4147 33 1 5.7678 2.1406 1.0864 34 1 7.4289 3.6396 2.5887 35 1 7.8965 3.7798 0.8770 36 1 7.5417 6.2320 0.9818 37 1 7.0742 6.0912 2.6935 38 1 9.3077 5.1569 3.2275 39 1 9.7759 5.2977 1.5160 40 1 9.4210 7.7499 1.6215 41 1 8.9528 7.6084 3.3329 42 1 11.3283 10.4224 3.2889 43 1 2.5021 1.7162 -2.0940 44 1 1.1430 3.9477 -0.3594 45 1 1.6799 4.1157 -2.1161 46 1 0.1136 2.2316 -2.7749 47 1 -0.4233 2.0630 -1.0187 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588339826.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:35 Heat of formation + Delta-G solvation = -32.978722 kcal Electronic energy + Delta-G solvation = -21429.707226 eV Core-core repulsion = 18226.443046 eV Total energy + Delta-G solvation = -3203.264180 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.80157 -39.05767 -35.57488 -34.82866 -34.35898 -32.60651 -31.65192 -29.80130 -27.83497 -25.45273 -23.40561 -22.94748 -22.65798 -21.84238 -20.81314 -20.11237 -19.90857 -16.90603 -16.39794 -16.31853 -16.12425 -16.01265 -15.64702 -15.01918 -14.66278 -14.41663 -13.87045 -13.76740 -13.61899 -13.45563 -12.78280 -12.57791 -12.37583 -12.07861 -11.92165 -11.79378 -11.64709 -11.61862 -11.53321 -11.34255 -10.95765 -10.54417 -10.50441 -10.47706 -10.44506 -10.37389 -9.77006 -9.57743 -9.18835 -9.10373 -8.95103 -8.85183 -8.28015 -5.92747 -3.95168 2.79261 2.90877 3.35609 3.41489 3.41656 3.44776 3.58363 4.42311 4.50964 4.56723 4.61193 4.65163 4.70463 4.77592 4.96333 5.04060 5.08357 5.12584 5.23903 5.32312 5.37377 5.40926 5.42905 5.43559 5.57397 5.66237 5.68937 5.76629 5.82960 5.89088 5.92595 6.18197 6.32334 6.35506 6.56779 6.59168 6.67840 6.88197 7.06323 7.23621 7.47726 7.77097 7.93507 8.09000 8.32498 8.50725 9.12597 9.68230 11.18553 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.049401 B = 0.002025 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.652179 B =13821.142722 C =14199.806486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.056 3.944 3 N -0.509 5.509 4 C 0.049 3.951 5 C 0.123 3.877 6 N -0.740 5.740 7 C 0.512 3.488 8 O -0.534 6.534 9 C -0.138 4.138 10 C -0.103 4.103 11 C -0.110 4.110 12 C 0.019 3.981 13 C -0.520 4.520 14 H 0.054 0.946 15 C 0.054 3.946 16 N -0.895 5.895 17 Si 0.891 3.109 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C -0.002 4.002 22 C -0.162 4.162 23 C -0.174 4.174 24 H 0.062 0.938 25 H 0.056 0.944 26 H 0.065 0.935 27 H 0.036 0.964 28 H 0.073 0.927 29 H 0.040 0.960 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.398 0.602 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.046 0.954 39 H 0.046 0.954 40 H 0.016 0.984 41 H 0.016 0.984 42 H 0.260 0.740 43 H 0.086 0.914 44 H 0.103 0.897 45 H 0.095 0.905 46 H 0.093 0.907 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.878 -22.420 -8.768 31.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.072 4.072 3 N -0.234 5.234 4 C -0.079 4.079 5 C -0.001 4.001 6 N -0.394 5.394 7 C 0.299 3.701 8 O -0.409 6.409 9 C -0.178 4.178 10 C -0.141 4.141 11 C -0.148 4.148 12 C -0.018 4.018 13 C -0.558 4.558 14 H 0.072 0.928 15 C -0.146 4.146 16 N -0.534 5.534 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.110 4.110 22 C -0.199 4.199 23 C -0.211 4.211 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.054 0.946 28 H 0.092 0.908 29 H 0.059 0.941 30 H 0.100 0.900 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.231 0.769 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.069 0.931 43 H 0.104 0.896 44 H 0.121 0.879 45 H 0.113 0.887 46 H 0.111 0.889 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -21.620 -21.219 -8.459 31.452 hybrid contribution 1.751 -0.810 -0.315 1.955 sum -19.868 -22.029 -8.774 30.936 Atomic orbital electron populations 1.22005 0.94743 1.01718 1.02672 1.22033 0.96463 0.87924 1.00752 1.61713 1.17427 1.17594 1.26665 1.22231 0.88175 0.96846 1.00660 1.21210 0.81739 0.95785 1.01385 1.46033 1.12006 1.09333 1.72051 1.21072 0.90200 0.82711 0.76076 1.90709 1.65405 1.33893 1.50920 1.21791 0.91284 1.01859 1.02892 1.21451 0.98043 0.92275 1.02368 1.21649 0.92525 1.01166 0.99455 1.19101 0.95853 0.89788 0.97048 1.21288 0.96145 0.92453 1.45931 0.92765 1.25049 0.97927 0.95886 0.95774 1.69976 1.36109 0.97676 1.49681 0.86608 0.85508 0.77507 0.78431 1.20738 1.21264 1.19944 1.22416 0.98104 0.99242 0.91265 1.23108 1.02693 0.90584 1.03543 1.23252 0.92912 1.03219 1.01758 0.91944 0.92492 0.91634 0.94596 0.90831 0.94149 0.90036 0.91255 0.90935 0.76882 0.89170 0.89225 0.91829 0.91796 0.93488 0.93513 0.96590 0.96561 0.93064 0.89629 0.87885 0.88652 0.88861 0.87530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 8.63 37.16 0.32 -0.52 16 2 C 0.06 0.34 5.70 -3.83 -0.02 0.32 16 3 N -0.51 -3.82 4.60 -226.65 -1.04 -4.87 16 4 C 0.05 0.36 5.06 -3.82 -0.02 0.34 16 5 C 0.12 1.23 5.49 -4.04 -0.02 1.20 16 6 N -0.74 -7.56 5.56 -60.29 -0.33 -7.90 16 7 C 0.51 7.31 7.83 -10.98 -0.09 7.23 16 8 O -0.53 -10.04 15.98 5.56 0.09 -9.95 16 9 C -0.14 -1.87 5.70 -27.88 -0.16 -2.03 16 10 C -0.10 -1.89 4.50 -26.73 -0.12 -2.01 16 11 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 12 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 13 C -0.52 -15.15 9.11 -34.44 -0.31 -15.46 16 14 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 15 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.89 -27.76 13.29 55.43 0.74 -27.02 16 17 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 21 C 0.00 -0.01 4.21 -67.72 -0.29 -0.30 16 22 C -0.16 -1.28 9.28 -26.69 -0.25 -1.53 16 23 C -0.17 -1.14 8.66 -26.69 -0.23 -1.37 16 24 H 0.06 0.33 5.72 -51.93 -0.30 0.03 16 25 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.06 0.41 8.05 -51.93 -0.42 0.00 16 27 H 0.04 0.21 8.04 -51.93 -0.42 -0.20 16 28 H 0.07 0.40 7.80 -51.93 -0.40 0.00 16 29 H 0.04 0.27 8.12 -51.93 -0.42 -0.15 16 30 H 0.08 0.52 7.86 -51.93 -0.41 0.11 16 31 H 0.07 0.79 6.59 -51.93 -0.34 0.44 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.40 2.79 8.47 -40.82 -0.35 2.45 16 34 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 37 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 38 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 43 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.10 0.94 8.14 -51.92 -0.42 0.51 16 45 H 0.10 0.73 8.14 -51.92 -0.42 0.31 16 46 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.11 0.68 5.93 -51.93 -0.31 0.38 16 LS Contribution 376.58 15.07 5.67 5.67 Total: -1.00 -33.93 376.58 -10.28 -44.21 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -8.82 Total: -2.53 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: -1.56 Total: -14.68 kcal Atomic # 7 Polarization: -39.15 SS G_CDS: -0.64 Total: -39.79 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.09 Total: -9.95 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.93 -10.28 -44.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588339826.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.232 kcal (2) G-P(sol) polarization free energy of solvation -33.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds