Wall clock time and date at job start Tue Mar 31 2020 05:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46904 * 110.99482 * 2 1 4 4 C 1.46899 * 111.00030 * 123.95136 * 2 1 3 5 5 H 1.08998 * 109.52603 * 55.08457 * 4 2 1 6 6 C 1.53046 * 109.49743 * 295.00337 * 4 2 1 7 7 C 1.53039 * 109.52798 * 178.67750 * 6 4 2 8 8 C 1.53195 * 109.31257 * 61.36716 * 7 6 4 9 9 N 1.46919 * 108.77845 * 305.36660 * 8 7 6 10 10 C 1.34771 * 120.63242 * 233.58225 * 9 8 7 11 11 O 1.21287 * 119.99858 * 179.97438 * 10 9 8 12 12 C 1.50698 * 120.00285 * 0.02562 * 10 9 8 13 13 C 1.52996 * 109.47586 * 179.97438 * 12 10 9 14 14 C 1.52994 * 109.47286 * 179.97438 * 13 12 10 15 15 C 1.53003 * 109.47341 * 179.97438 * 14 13 12 16 16 C 1.50702 * 109.47200 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00086 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99581 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00186 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99417 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47165 * 90.00596 * 20 18 16 22 22 H 1.48507 * 109.46793 * 210.00236 * 20 18 16 23 23 H 1.48499 * 109.47464 * 330.00286 * 20 18 16 24 24 C 1.46931 * 118.73612 * 53.60997 * 9 8 7 25 25 H 1.08996 * 109.47460 * 296.04854 * 1 2 3 26 26 H 1.08993 * 109.46819 * 56.05036 * 1 2 3 27 27 H 1.09003 * 109.46632 * 176.04746 * 1 2 3 28 28 H 1.09004 * 109.46480 * 183.95128 * 3 2 1 29 29 H 1.08999 * 109.47131 * 303.94969 * 3 2 1 30 30 H 1.08998 * 109.47341 * 63.95448 * 3 2 1 31 31 H 1.09002 * 109.46115 * 58.66203 * 6 4 2 32 32 H 1.09004 * 109.45806 * 298.69088 * 6 4 2 33 33 H 1.08997 * 109.50134 * 181.32407 * 7 6 4 34 34 H 1.09006 * 109.49908 * 301.38992 * 7 6 4 35 35 H 1.08997 * 109.58182 * 65.15696 * 8 7 6 36 36 H 1.09002 * 109.58573 * 185.43694 * 8 7 6 37 37 H 1.09001 * 109.46653 * 299.99587 * 12 10 9 38 38 H 1.09000 * 109.47212 * 59.99022 * 12 10 9 39 39 H 1.09001 * 109.46802 * 299.99514 * 13 12 10 40 40 H 1.09000 * 109.47629 * 59.99296 * 13 12 10 41 41 H 1.08999 * 109.47686 * 299.99721 * 14 13 12 42 42 H 1.09003 * 109.47358 * 59.99723 * 14 13 12 43 43 H 1.09001 * 109.46986 * 299.99849 * 15 14 13 44 44 H 1.09003 * 109.46909 * 59.99707 * 15 14 13 45 45 H 0.97000 * 119.99874 * 179.97438 * 19 18 16 46 46 H 1.08998 * 109.58959 * 66.17523 * 24 9 8 47 47 H 1.09003 * 109.58181 * 186.46006 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 1 1.5771 -1.7723 1.1241 6 6 1.6093 -0.0697 2.4447 7 6 2.1291 -0.8845 3.6313 8 6 3.6572 -0.9655 3.5597 9 7 4.0415 -1.4999 2.2462 10 6 4.8554 -2.5699 2.1515 11 8 5.1649 -3.0018 1.0613 12 6 5.3800 -3.2305 3.4003 13 6 6.2730 -4.4118 3.0159 14 6 6.8060 -5.0820 4.2837 15 6 7.6986 -6.2638 3.8992 16 6 8.2241 -6.9235 5.1481 17 1 7.9487 -6.5387 6.1189 18 6 9.0557 -8.0190 5.0512 19 7 9.3906 -8.4879 3.8690 20 14 9.7065 -8.8372 6.5993 21 1 8.7649 -9.9017 7.0299 22 1 11.0367 -9.4360 6.3208 23 1 9.8356 -7.8245 7.6777 24 6 3.5221 -0.8451 1.0377 25 1 -0.3634 0.4513 0.9232 26 1 -0.3633 0.5739 -0.8524 27 1 -0.3633 -1.0253 -0.0708 28 1 3.0828 1.3433 -0.0708 29 1 1.5898 1.9163 -0.8525 30 1 1.7043 1.8724 0.9233 31 1 0.5240 0.0102 2.5066 32 1 2.0488 0.9275 2.4686 33 1 1.8335 -0.4008 4.5622 34 1 1.7090 -1.8897 3.5943 35 1 4.0822 0.0300 3.6878 36 1 4.0254 -1.6241 4.3464 37 1 5.9592 -2.5092 3.9769 38 1 4.5436 -3.5880 4.0010 39 1 5.6933 -5.1329 2.4395 40 1 7.1093 -4.0547 2.4150 41 1 7.3858 -4.3608 4.8597 42 1 5.9699 -5.4391 4.8850 43 1 7.1185 -6.9850 3.3235 44 1 8.5347 -5.9070 3.2978 45 1 9.9759 -9.2584 3.8009 46 1 3.9361 0.1602 0.9602 47 1 3.8032 -1.4249 0.1586 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588342369.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:31 Heat of formation + Delta-G solvation = -51.071796 kcal Electronic energy + Delta-G solvation = -22437.449589 eV Core-core repulsion = 19233.400834 eV Total energy + Delta-G solvation = -3204.048754 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.55302 -38.72732 -36.16205 -34.89357 -32.66764 -32.48326 -30.87020 -29.39960 -28.08626 -26.19217 -25.41885 -24.34325 -22.56292 -22.11473 -20.16046 -19.92456 -18.92643 -17.13178 -16.27787 -16.16442 -15.93116 -15.57209 -15.27381 -15.12354 -14.50342 -14.36935 -14.20465 -14.12216 -13.31970 -13.26834 -13.03907 -12.59796 -12.55418 -12.19375 -12.14389 -12.01119 -11.72167 -11.55829 -11.51117 -11.22275 -11.17433 -11.07475 -10.96198 -10.50866 -10.48057 -10.36482 -9.72132 -9.58150 -9.19295 -8.95528 -8.84183 -8.59557 -8.28295 -5.93013 -3.95479 2.70581 2.82580 3.35369 3.41320 3.44496 3.64678 4.30531 4.38942 4.50389 4.53116 4.58894 4.72336 4.84022 4.90421 4.97664 5.02413 5.14087 5.16391 5.23549 5.33407 5.37777 5.42265 5.44629 5.45946 5.49511 5.53280 5.57990 5.64650 5.77629 5.89199 5.91558 6.16950 6.27674 6.35865 6.57853 6.61839 6.67335 6.87381 7.04992 7.22531 7.33826 7.76726 7.93131 8.08704 8.25194 8.50344 9.12302 9.67984 11.18334 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.042510 B = 0.002508 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.511098 B =11163.093928 C =11485.565009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.538 5.538 3 C 0.015 3.985 4 C 0.071 3.929 5 H 0.087 0.913 6 C -0.154 4.154 7 C -0.131 4.131 8 C 0.105 3.895 9 N -0.620 5.620 10 C 0.515 3.485 11 O -0.532 6.532 12 C -0.137 4.137 13 C -0.104 4.104 14 C -0.110 4.110 15 C 0.019 3.981 16 C -0.520 4.520 17 H 0.054 0.946 18 C 0.055 3.945 19 N -0.895 5.895 20 Si 0.891 3.109 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 C 0.118 3.882 25 H 0.029 0.971 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.030 0.970 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.046 0.954 42 H 0.046 0.954 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.260 0.740 46 H 0.065 0.935 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.182 22.384 -3.025 29.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.261 5.261 3 C -0.133 4.133 4 C -0.038 4.038 5 H 0.105 0.895 6 C -0.193 4.193 7 C -0.170 4.170 8 C -0.018 4.018 9 N -0.355 5.355 10 C 0.305 3.695 11 O -0.408 6.408 12 C -0.177 4.177 13 C -0.142 4.142 14 C -0.147 4.147 15 C -0.018 4.018 16 C -0.558 4.558 17 H 0.072 0.928 18 C -0.146 4.146 19 N -0.535 5.535 20 Si 0.719 3.281 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.005 4.005 25 H 0.047 0.953 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.049 0.951 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.111 0.889 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.034 0.966 44 H 0.034 0.966 45 H 0.069 0.931 46 H 0.083 0.917 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -18.733 21.772 -4.159 29.021 hybrid contribution -0.038 0.020 1.646 1.646 sum -18.771 21.791 -2.513 28.871 Atomic orbital electron populations 1.22406 0.87131 1.02466 1.00544 1.62145 1.08073 1.13964 1.41878 1.22523 1.01248 0.88961 1.00613 1.22096 0.95713 0.98138 0.87900 0.89470 1.22221 1.01236 0.99987 0.95841 1.21868 0.95563 1.01207 0.98378 1.21753 0.94941 0.99954 0.85122 1.48161 1.49274 1.31416 1.06690 1.21117 0.77489 0.78834 0.92088 1.90704 1.57683 1.62822 1.29552 1.21817 1.01181 0.99595 0.95085 1.21464 0.98362 0.94985 0.99360 1.21644 0.99240 0.98857 0.94986 1.19100 0.94182 0.91848 0.96629 1.21283 1.28649 1.12896 0.92969 0.92775 1.25047 0.96515 0.97190 0.95861 1.69976 1.36189 1.24664 1.22633 0.86614 0.78265 0.79635 0.83577 1.20722 1.21266 1.19938 1.21528 0.91683 0.98100 0.89144 0.95270 0.91286 0.91282 0.90922 0.91358 0.95128 0.91524 0.91405 0.90531 0.91147 0.91452 0.88948 0.89206 0.89207 0.91800 0.91791 0.93506 0.93529 0.96588 0.96579 0.93052 0.91669 0.88198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.31 60.07 0.56 0.71 16 2 N -0.54 -4.44 5.01 -243.03 -1.22 -5.66 16 3 C 0.01 0.10 8.82 60.07 0.53 0.63 16 4 C 0.07 0.62 2.38 -67.59 -0.16 0.46 16 5 H 0.09 0.88 8.13 -51.93 -0.42 0.46 16 6 C -0.15 -1.04 4.46 -26.69 -0.12 -1.16 16 7 C -0.13 -0.87 6.08 -26.61 -0.16 -1.03 16 8 C 0.11 0.82 6.34 -3.71 -0.02 0.80 16 9 N -0.62 -6.91 2.97 -172.77 -0.51 -7.42 16 10 C 0.52 7.58 7.70 -10.99 -0.08 7.49 16 11 O -0.53 -10.08 15.39 5.55 0.09 -9.99 16 12 C -0.14 -1.88 4.05 -27.89 -0.11 -1.99 16 13 C -0.10 -1.90 4.50 -26.74 -0.12 -2.02 16 14 C -0.11 -2.28 5.15 -26.73 -0.14 -2.42 16 15 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 16 C -0.52 -15.09 9.11 -34.44 -0.31 -15.41 16 17 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 18 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 19 N -0.90 -27.75 13.29 55.43 0.74 -27.02 16 20 Si 0.89 22.04 29.54 -169.99 -5.02 17.01 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 24 C 0.12 1.25 5.64 -3.71 -0.02 1.23 16 25 H 0.03 0.17 6.41 -51.93 -0.33 -0.16 16 26 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.50 6.22 -51.93 -0.32 0.18 16 29 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 30 H 0.03 0.18 6.31 -51.93 -0.33 -0.14 16 31 H 0.07 0.43 6.46 -51.93 -0.34 0.09 16 32 H 0.07 0.44 6.46 -51.93 -0.34 0.11 16 33 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.09 0.66 5.95 -51.93 -0.31 0.35 16 37 H 0.09 1.07 7.94 -51.93 -0.41 0.65 16 38 H 0.09 1.06 7.70 -51.93 -0.40 0.66 16 39 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 40 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 41 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 46 H 0.07 0.62 6.18 -51.93 -0.32 0.29 16 47 H 0.10 1.33 7.00 -51.93 -0.36 0.96 16 LS Contribution 359.89 15.07 5.42 5.42 Total: -1.00 -33.69 359.89 -9.40 -43.09 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -8.49 Total: -4.62 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: -0.40 Total: -10.82 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: -0.99 Total: -40.10 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.09 Total: -9.99 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.69 -9.40 -43.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588342369.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.979 kcal (2) G-P(sol) polarization free energy of solvation -33.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds