Wall clock time and date at job start Tue Mar 31 2020 05:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46500 * 120.00115 * 2 1 4 4 C 1.52997 * 109.47473 * 270.00004 * 3 2 1 5 5 N 1.46899 * 109.47254 * 179.97438 * 4 3 2 6 6 C 1.48534 * 110.99830 * 52.60377 * 5 4 3 7 7 C 1.54939 * 103.22817 * 159.71871 * 6 5 4 8 8 C 1.54596 * 102.92012 * 322.58829 * 7 6 5 9 9 C 1.47901 * 111.00170 * 169.99716 * 5 4 3 10 10 C 1.34780 * 120.00142 * 179.97438 * 2 1 3 11 11 O 1.21278 * 120.00148 * 180.02562 * 10 2 1 12 12 C 1.50701 * 119.99973 * 0.02562 * 10 2 1 13 13 C 1.52994 * 109.47189 * 179.97438 * 12 10 2 14 14 C 1.53005 * 109.47195 * 179.97438 * 13 12 10 15 15 C 1.52994 * 109.47195 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.46974 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00111 * 0.02562 * 16 15 14 18 18 C 1.37883 * 119.99948 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99984 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00107 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47432 * 89.99479 * 20 18 16 22 22 H 1.48501 * 109.47062 * 209.99593 * 20 18 16 23 23 H 1.48500 * 109.47172 * 329.99761 * 20 18 16 24 24 H 1.09004 * 109.46564 * 89.99966 * 1 2 3 25 25 H 1.08992 * 109.46978 * 209.99640 * 1 2 3 26 26 H 1.08993 * 109.47313 * 330.00169 * 1 2 3 27 27 H 1.09002 * 109.47129 * 149.99747 * 3 2 1 28 28 H 1.08998 * 109.46845 * 30.00553 * 3 2 1 29 29 H 1.09002 * 109.47153 * 59.99757 * 4 3 2 30 30 H 1.09001 * 109.46832 * 299.99948 * 4 3 2 31 31 H 1.08996 * 110.66891 * 278.15580 * 6 5 4 32 32 H 1.09001 * 110.67193 * 41.28416 * 6 5 4 33 33 H 1.08998 * 110.72475 * 204.22657 * 7 6 5 34 34 H 1.09000 * 110.72444 * 80.94246 * 7 6 5 35 35 H 1.09001 * 110.31032 * 263.03776 * 8 7 6 36 36 H 1.09004 * 110.30836 * 140.87248 * 8 7 6 37 37 H 1.08999 * 109.91618 * 333.51273 * 9 5 4 38 38 H 1.09004 * 109.91578 * 94.60372 * 9 5 4 39 39 H 1.09007 * 109.46890 * 300.00316 * 12 10 2 40 40 H 1.09004 * 109.46922 * 59.99684 * 12 10 2 41 41 H 1.08993 * 109.47759 * 300.00242 * 13 12 10 42 42 H 1.09004 * 109.47173 * 60.00172 * 13 12 10 43 43 H 1.09006 * 109.46933 * 300.00254 * 14 13 12 44 44 H 1.09004 * 109.46712 * 60.00144 * 14 13 12 45 45 H 1.09000 * 109.47470 * 300.00702 * 15 14 13 46 46 H 1.09004 * 109.47173 * 60.00426 * 15 14 13 47 47 H 0.97002 * 120.00199 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7104 -1.4424 5 7 3.1866 2.9829 -1.4424 6 6 4.4067 2.8936 -0.6000 7 6 5.2841 4.0589 -1.1222 8 6 5.0113 4.0421 -2.6438 9 6 3.6594 3.3222 -2.8021 10 6 2.1389 -1.1672 0.0005 11 8 3.3517 -1.1672 0.0010 12 6 1.3854 -2.4723 0.0005 13 6 2.3797 -3.6352 0.0005 14 6 1.6147 -4.9603 0.0012 15 6 2.6089 -6.1232 0.0005 16 6 1.8554 -7.4282 0.0018 17 1 0.7754 -7.4282 0.0025 18 6 2.5448 -8.6223 0.0020 19 7 3.8599 -8.6223 0.0006 20 14 1.6108 -10.2400 0.0029 21 1 1.3627 -10.6692 -1.3970 22 1 2.4136 -11.2747 0.7030 23 1 0.3135 -10.0623 0.7033 24 1 -0.3632 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5137 26 1 -0.3633 0.8899 0.5138 27 1 3.1499 1.1384 0.5139 28 1 1.6085 2.0283 0.5139 29 1 1.5002 1.8408 -1.9563 30 1 3.0417 0.9508 -1.9563 31 1 4.1597 3.0392 0.4515 32 1 4.9083 1.9375 -0.7495 33 1 6.3379 3.8702 -0.9171 34 1 4.9683 5.0058 -0.6842 35 1 5.7961 3.4918 -3.1628 36 1 4.9450 5.0602 -3.0275 37 1 3.7896 2.4122 -3.3877 38 1 2.9406 3.9791 -3.2920 39 1 0.7584 -2.5298 0.8903 40 1 0.7591 -2.5302 -0.8897 41 1 3.0064 -3.5775 -0.8893 42 1 3.0063 -3.5775 0.8905 43 1 0.9882 -5.0177 0.8914 44 1 0.9877 -5.0182 -0.8886 45 1 3.2350 -6.0654 -0.8898 46 1 3.2361 -6.0654 0.8901 47 1 4.3450 -9.4624 0.0004 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588346301.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:51 Heat of formation + Delta-G solvation = -54.938893 kcal Electronic energy + Delta-G solvation = -21958.047226 eV Core-core repulsion = 18753.830782 eV Total energy + Delta-G solvation = -3204.216444 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.10907 -39.02073 -35.91709 -34.88296 -33.07218 -32.48431 -30.02541 -29.28661 -28.31468 -26.68911 -25.45768 -23.56299 -22.07759 -21.13317 -20.88714 -19.98666 -18.95211 -16.96071 -16.70289 -16.41827 -16.14061 -15.72203 -15.52456 -14.67377 -14.46104 -14.41695 -14.12146 -13.48788 -13.27194 -13.09476 -12.91980 -12.66657 -12.46191 -12.26699 -12.15380 -11.74975 -11.68817 -11.62371 -11.56487 -11.42793 -11.10309 -10.97128 -10.86307 -10.52616 -10.49012 -10.38962 -9.77759 -9.59885 -9.21173 -8.97215 -8.83655 -8.75230 -8.29652 -5.94405 -3.96882 2.67519 2.83674 3.34450 3.40418 3.43655 3.78434 4.32801 4.37677 4.48830 4.54704 4.66230 4.85372 4.90007 4.93637 5.01311 5.17961 5.21249 5.27147 5.32465 5.35413 5.40074 5.41404 5.46808 5.47543 5.51696 5.58701 5.65550 5.73420 5.77620 5.86772 5.88572 6.15092 6.25856 6.34417 6.53945 6.56158 6.72821 6.85276 7.02558 7.20202 7.28518 7.75124 7.91222 8.07097 8.20836 8.48913 9.10870 9.66635 11.16949 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030098 B = 0.002409 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.070710 B =11622.341263 C =12164.239708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.625 5.625 3 C 0.116 3.884 4 C 0.032 3.968 5 N -0.516 5.516 6 C 0.028 3.972 7 C -0.124 4.124 8 C -0.132 4.132 9 C 0.035 3.965 10 C 0.512 3.488 11 O -0.534 6.534 12 C -0.137 4.137 13 C -0.103 4.103 14 C -0.110 4.110 15 C 0.020 3.980 16 C -0.520 4.520 17 H 0.054 0.946 18 C 0.054 3.946 19 N -0.896 5.896 20 Si 0.891 3.109 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 H 0.055 0.945 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.042 0.958 31 H 0.083 0.917 32 H 0.052 0.948 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.045 0.955 38 H 0.078 0.922 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.047 0.953 44 H 0.046 0.954 45 H 0.015 0.985 46 H 0.016 0.984 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.466 27.521 -2.451 27.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.360 5.360 3 C -0.007 4.007 4 C -0.097 4.097 5 N -0.241 5.241 6 C -0.099 4.099 7 C -0.162 4.162 8 C -0.170 4.170 9 C -0.093 4.093 10 C 0.302 3.698 11 O -0.410 6.410 12 C -0.177 4.177 13 C -0.141 4.141 14 C -0.147 4.147 15 C -0.018 4.018 16 C -0.558 4.558 17 H 0.072 0.928 18 C -0.146 4.146 19 N -0.535 5.535 20 Si 0.719 3.281 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.199 1.199 24 H 0.074 0.926 25 H 0.095 0.905 26 H 0.089 0.911 27 H 0.102 0.898 28 H 0.100 0.900 29 H 0.094 0.906 30 H 0.060 0.940 31 H 0.101 0.899 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.063 0.937 38 H 0.097 0.903 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.034 0.966 46 H 0.034 0.966 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.038 27.776 -2.247 28.158 hybrid contribution -0.084 -1.568 -0.433 1.629 sum -4.122 26.208 -2.680 26.666 Atomic orbital electron populations 1.21826 0.79255 1.03417 1.01960 1.47942 1.07130 1.05904 1.75033 1.21439 0.98367 0.84785 0.96131 1.22658 0.99124 0.90016 0.97944 1.64812 1.20803 1.29846 1.08615 1.23307 0.90196 0.98015 0.98396 1.22483 0.99566 0.98983 0.95163 1.22396 0.96644 1.01007 0.96921 1.22869 0.96284 0.99532 0.90590 1.21163 0.88256 0.85515 0.74893 1.90690 1.14215 1.87344 1.48704 1.21827 1.00077 0.91967 1.03800 1.21460 0.97037 0.92767 1.02885 1.21647 0.99063 0.93988 1.00043 1.19096 0.94069 0.91288 0.97298 1.21284 0.92977 0.91194 1.50343 0.92751 1.25050 0.94848 0.99244 0.95489 1.69977 1.06052 1.26496 1.50970 0.86606 0.79819 0.83591 0.78040 1.20716 1.21258 1.19920 0.92613 0.90471 0.91097 0.89799 0.89997 0.90596 0.93978 0.89882 0.93000 0.90976 0.90764 0.91448 0.90996 0.93665 0.90338 0.89113 0.89194 0.91907 0.91838 0.93471 0.93506 0.96625 0.96593 0.93052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.57 10.29 59.85 0.62 1.19 16 2 N -0.62 -6.85 2.87 -181.58 -0.52 -7.37 16 3 C 0.12 1.19 5.11 -4.04 -0.02 1.17 16 4 C 0.03 0.33 5.35 -3.83 -0.02 0.31 16 5 N -0.52 -4.93 5.40 -230.46 -1.24 -6.17 16 6 C 0.03 0.26 5.10 -1.90 -0.01 0.25 16 7 C -0.12 -0.93 7.06 -24.87 -0.18 -1.10 16 8 C -0.13 -0.96 6.93 -25.38 -0.18 -1.13 16 9 C 0.04 0.30 6.69 -2.76 -0.02 0.28 16 10 C 0.51 7.44 7.67 -10.98 -0.08 7.36 16 11 O -0.53 -9.89 15.56 5.56 0.09 -9.80 16 12 C -0.14 -1.88 4.25 -27.89 -0.12 -2.00 16 13 C -0.10 -1.89 4.50 -26.73 -0.12 -2.01 16 14 C -0.11 -2.29 5.15 -26.73 -0.14 -2.43 16 15 C 0.02 0.52 4.97 -27.89 -0.14 0.39 16 16 C -0.52 -15.09 9.11 -34.44 -0.31 -15.40 16 17 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 18 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.90 -27.73 13.29 55.43 0.74 -26.99 16 20 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 24 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.08 0.52 6.44 -51.93 -0.33 0.18 16 26 H 0.07 0.39 7.89 -51.93 -0.41 -0.02 16 27 H 0.08 1.01 6.07 -51.93 -0.32 0.69 16 28 H 0.08 0.69 7.89 -51.93 -0.41 0.28 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.04 0.53 7.81 -51.93 -0.41 0.12 16 31 H 0.08 0.71 7.66 -51.93 -0.40 0.32 16 32 H 0.05 0.57 8.00 -51.93 -0.42 0.15 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.04 0.41 7.57 -51.93 -0.39 0.02 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.09 1.07 7.40 -51.93 -0.38 0.69 16 40 H 0.09 1.08 8.11 -51.93 -0.42 0.66 16 41 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 42 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 43 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 372.30 15.07 5.61 5.61 Total: -1.00 -33.71 372.30 -10.09 -43.80 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -8.92 Total: -4.45 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: -0.82 Total: -11.62 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: -1.03 Total: -40.54 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.09 Total: -9.80 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.71 -10.09 -43.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588346301.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.138 kcal (2) G-P(sol) polarization free energy of solvation -33.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds