Wall clock time and date at job start Tue Mar 31 2020 05:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46846 * 110.99827 * 2 1 4 4 C 1.53041 * 109.52089 * 174.16033 * 3 2 1 5 5 C 1.53114 * 109.28021 * 59.17789 * 4 3 2 6 6 C 1.53123 * 109.16029 * 302.34613 * 5 4 3 7 7 H 1.08994 * 109.50176 * 297.67120 * 6 5 4 8 8 C 1.53000 * 109.50136 * 177.59238 * 6 5 4 9 9 N 1.46499 * 109.46840 * 174.99798 * 8 6 5 10 10 C 1.34779 * 119.99872 * 180.02562 * 9 8 6 11 11 O 1.21278 * 120.00071 * 359.97438 * 10 9 8 12 12 C 1.50703 * 119.99944 * 180.02562 * 10 9 8 13 13 C 1.52997 * 109.47084 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47232 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.47232 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.47084 * 180.02562 * 15 14 13 17 17 H 1.08003 * 120.00315 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00098 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99989 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00260 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47163 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47158 * 120.00541 * 20 18 16 23 23 H 1.48504 * 109.47233 * 240.00380 * 20 18 16 24 24 C 1.46843 * 110.99801 * 235.78861 * 2 1 3 25 25 H 1.09005 * 109.46710 * 63.95305 * 1 2 3 26 26 H 1.09001 * 109.46823 * 183.95395 * 1 2 3 27 27 H 1.08994 * 109.46958 * 303.95594 * 1 2 3 28 28 H 1.09001 * 109.46404 * 54.14015 * 3 2 1 29 29 H 1.09004 * 109.46108 * 294.17221 * 3 2 1 30 30 H 1.08997 * 109.49978 * 299.23733 * 4 3 2 31 31 H 1.09001 * 109.53171 * 179.14368 * 4 3 2 32 32 H 1.08999 * 109.52616 * 182.44088 * 5 4 3 33 33 H 1.09003 * 109.52430 * 62.25047 * 5 4 3 34 34 H 1.09002 * 109.47398 * 295.00125 * 8 6 5 35 35 H 1.09001 * 109.47194 * 55.00305 * 8 6 5 36 36 H 0.97000 * 120.00420 * 0.02562 * 9 8 6 37 37 H 1.09002 * 109.47152 * 300.00160 * 12 10 9 38 38 H 1.09001 * 109.46980 * 60.00059 * 12 10 9 39 39 H 1.09002 * 109.47045 * 299.99967 * 13 12 10 40 40 H 1.09001 * 109.47375 * 60.00042 * 13 12 10 41 41 H 1.09002 * 109.47153 * 299.99992 * 14 13 12 42 42 H 1.09001 * 109.47289 * 60.00075 * 14 13 12 43 43 H 1.09001 * 109.47230 * 299.99295 * 15 14 13 44 44 H 1.08988 * 109.47529 * 59.99846 * 15 14 13 45 45 H 0.96996 * 119.99885 * 179.97438 * 19 18 16 46 46 H 1.08996 * 109.46318 * 65.82518 * 24 2 1 47 47 H 1.08996 * 109.46327 * 305.85277 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3342 0.1468 5 6 4.1189 0.5370 -1.0143 6 6 3.5182 -0.8715 -1.0207 7 1 3.7820 -1.3838 -0.0956 8 6 4.0681 -1.6559 -2.2138 9 7 3.5872 -3.0383 -2.1527 10 6 3.9468 -3.9196 -3.1069 11 8 4.6681 -3.5681 -4.0163 12 6 3.4516 -5.3416 -3.0445 13 6 4.0026 -6.1263 -4.2367 14 6 3.5004 -7.5701 -4.1730 15 6 4.0509 -8.3547 -5.3656 16 6 3.5557 -9.7767 -5.3031 17 1 2.9123 -10.0895 -4.4940 18 6 3.9231 -10.6782 -6.2795 19 7 4.7062 -10.2972 -7.2651 20 14 3.3100 -12.4409 -6.2017 21 1 2.4508 -12.6137 -5.0030 22 1 2.5219 -12.7452 -7.4231 23 1 4.4693 -13.3651 -6.1177 24 6 1.9953 -0.7708 -1.1337 25 1 -0.3633 0.4513 -0.9234 26 1 -0.3633 -1.0252 0.0709 27 1 -0.3633 0.5740 0.8524 28 1 1.5634 1.9258 0.8329 29 1 1.7325 1.8608 -0.9376 30 1 3.7813 0.8568 1.0906 31 1 3.9104 2.3510 0.1315 32 1 5.1998 0.4714 -0.8904 33 1 3.8888 1.0354 -1.9560 34 1 3.7282 -1.1934 -3.1405 35 1 5.1576 -1.6485 -2.1823 36 1 3.0099 -3.3194 -1.4256 37 1 3.7907 -5.8041 -2.1175 38 1 2.3621 -5.3487 -3.0766 39 1 3.6638 -5.6640 -5.1638 40 1 5.0921 -6.1193 -4.2041 41 1 3.8396 -8.0322 -3.2458 42 1 2.4109 -7.5777 -4.2054 43 1 3.7113 -7.8926 -6.2925 44 1 5.1403 -8.3473 -5.3337 45 1 4.9650 -10.9315 -7.9518 46 1 1.7325 -0.2709 -2.0659 47 1 1.5635 -1.7715 -1.1241 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588354550.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:19 Heat of formation + Delta-G solvation = -74.031691 kcal Electronic energy + Delta-G solvation = -21678.427554 eV Core-core repulsion = 18473.383184 eV Total energy + Delta-G solvation = -3205.044370 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.06727 -39.13940 -35.65282 -34.78816 -33.66362 -32.59807 -31.49747 -29.66551 -27.30795 -26.61492 -25.13082 -23.34282 -22.47250 -21.68705 -20.48073 -19.96835 -19.82834 -16.91471 -16.26561 -16.15348 -15.98453 -15.81515 -15.48171 -15.02224 -14.80313 -14.42464 -14.11539 -13.86259 -13.50917 -13.24513 -13.03883 -12.75328 -12.61586 -12.51834 -12.13022 -11.83575 -11.65722 -11.57279 -11.50156 -11.11062 -10.97300 -10.92420 -10.78657 -10.50350 -10.46351 -10.37837 -9.76576 -9.58241 -9.18891 -9.12623 -8.94233 -8.79532 -8.28632 -5.93231 -3.95549 2.77980 3.16228 3.34523 3.41615 3.43745 3.45720 4.28376 4.32611 4.43522 4.50781 4.61580 4.77275 4.91933 4.95741 5.00598 5.03338 5.11552 5.28227 5.29565 5.31131 5.38620 5.41068 5.42685 5.42991 5.46481 5.50011 5.58096 5.69591 5.77174 5.90916 5.97312 6.17956 6.33811 6.36883 6.58842 6.59463 6.61139 6.87891 7.05961 7.23398 7.47655 7.77018 7.93084 8.08622 8.31461 8.50435 9.12475 9.67975 11.18135 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.038601 B = 0.002160 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.189992 B =12957.630824 C =13482.086643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.544 5.544 3 C 0.053 3.947 4 C -0.116 4.116 5 C -0.115 4.115 6 C -0.096 4.096 7 H 0.087 0.913 8 C 0.124 3.876 9 N -0.739 5.739 10 C 0.511 3.489 11 O -0.536 6.536 12 C -0.139 4.139 13 C -0.103 4.103 14 C -0.110 4.110 15 C 0.019 3.981 16 C -0.519 4.519 17 H 0.055 0.945 18 C 0.054 3.946 19 N -0.895 5.895 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.284 1.284 24 C 0.059 3.941 25 H 0.025 0.975 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.033 0.967 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.399 0.601 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.046 0.954 42 H 0.046 0.954 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.259 0.741 46 H 0.036 0.964 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.286 25.455 17.712 31.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.268 5.268 3 C -0.075 4.075 4 C -0.154 4.154 5 C -0.153 4.153 6 C -0.115 4.115 7 H 0.105 0.895 8 C 0.000 4.000 9 N -0.393 5.393 10 C 0.298 3.702 11 O -0.412 6.412 12 C -0.179 4.179 13 C -0.141 4.141 14 C -0.148 4.148 15 C -0.018 4.018 16 C -0.557 4.557 17 H 0.073 0.927 18 C -0.147 4.147 19 N -0.535 5.535 20 Si 0.719 3.281 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.069 4.069 25 H 0.044 0.956 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.051 0.949 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.234 0.766 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.034 0.966 44 H 0.034 0.966 45 H 0.069 0.931 46 H 0.054 0.946 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.522 25.426 17.311 31.251 hybrid contribution -0.916 -0.696 -0.431 1.228 sum -6.438 24.730 16.880 30.626 Atomic orbital electron populations 1.22366 0.87033 1.02512 1.00501 1.61910 1.07722 1.13774 1.43384 1.22127 0.95764 0.89133 1.00466 1.21572 0.94276 1.00253 0.99286 1.21564 1.00375 0.94444 0.98915 1.21436 0.94598 0.96557 0.98910 0.89481 1.21324 0.99339 0.81442 0.97891 1.46131 1.53420 1.10773 1.28946 1.21103 0.80000 0.87987 0.81073 1.90705 1.36513 1.79775 1.34226 1.21793 1.02330 0.91151 1.02608 1.21446 1.01004 0.95861 0.95813 1.21648 0.99519 0.92756 1.00862 1.19105 0.96340 0.94030 0.92344 1.21327 1.29843 0.95448 1.09082 0.92702 1.25055 0.95306 0.98766 0.95559 1.69988 1.35765 1.34866 1.12859 0.86553 0.78584 0.85078 0.77868 1.19784 1.21079 1.21065 1.22157 0.94740 0.98471 0.91512 0.95650 0.91121 0.91312 0.90756 0.94910 0.90920 0.91267 0.91140 0.91822 0.91705 0.91264 0.76632 0.89155 0.89220 0.91855 0.91826 0.93476 0.93508 0.96597 0.96575 0.93122 0.94561 0.90534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.59 60.07 0.58 0.72 16 2 N -0.54 -3.84 4.91 -242.95 -1.19 -5.04 16 3 C 0.05 0.33 5.46 -3.83 -0.02 0.31 16 4 C -0.12 -0.65 6.09 -26.65 -0.16 -0.82 16 5 C -0.11 -0.72 5.29 -26.61 -0.14 -0.86 16 6 C -0.10 -0.67 2.39 -90.53 -0.22 -0.88 16 7 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 8 C 0.12 1.15 5.07 -4.04 -0.02 1.13 16 9 N -0.74 -7.39 5.29 -60.29 -0.32 -7.71 16 10 C 0.51 7.20 7.83 -10.98 -0.09 7.11 16 11 O -0.54 -9.96 15.98 5.56 0.09 -9.87 16 12 C -0.14 -1.87 5.70 -27.88 -0.16 -2.03 16 13 C -0.10 -1.88 4.50 -26.73 -0.12 -2.00 16 14 C -0.11 -2.31 5.15 -26.73 -0.14 -2.44 16 15 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 16 C -0.52 -15.10 9.11 -34.44 -0.31 -15.42 16 17 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 18 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 19 N -0.90 -27.77 13.29 55.43 0.74 -27.03 16 20 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 21 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 24 C 0.06 0.42 4.61 -3.83 -0.02 0.41 16 25 H 0.02 0.15 8.14 -51.93 -0.42 -0.27 16 26 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.35 8.10 -51.93 -0.42 -0.07 16 28 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 29 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.40 2.94 7.67 -40.82 -0.31 2.62 16 37 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 40 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 41 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.02 0.46 8.14 -51.94 -0.42 0.03 16 45 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 46 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 47 H 0.08 0.53 7.20 -51.93 -0.37 0.16 16 LS Contribution 373.27 15.07 5.63 5.63 Total: -1.00 -33.97 373.27 -10.23 -44.20 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -9.10 Total: -4.32 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: -1.05 Total: -12.92 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: -0.78 Total: -39.78 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.09 Total: -9.87 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.97 -10.23 -44.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588354550.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.830 kcal (2) G-P(sol) polarization free energy of solvation -33.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds