Wall clock time and date at job start Tue Mar 31 2020 05:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46846 * 110.99827 * 2 1 4 4 C 1.53041 * 109.52089 * 174.16033 * 3 2 1 5 5 C 1.53114 * 109.28021 * 59.17789 * 4 3 2 6 6 C 1.53123 * 109.16029 * 302.34613 * 5 4 3 7 7 H 1.08994 * 109.50176 * 297.67120 * 6 5 4 8 8 C 1.53000 * 109.50136 * 177.59238 * 6 5 4 9 9 N 1.46499 * 109.46840 * 174.99798 * 8 6 5 10 10 C 1.34779 * 119.99872 * 180.02562 * 9 8 6 11 11 O 1.21278 * 120.00071 * 359.97438 * 10 9 8 12 12 C 1.50703 * 119.99944 * 180.02562 * 10 9 8 13 13 C 1.52997 * 109.47084 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47232 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.47232 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.47084 * 180.02562 * 15 14 13 17 17 H 1.08003 * 120.00315 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00098 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99989 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00260 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47163 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47158 * 120.00541 * 20 18 16 23 23 H 1.48504 * 109.47233 * 240.00380 * 20 18 16 24 24 C 1.46843 * 110.99801 * 235.78861 * 2 1 3 25 25 H 1.09005 * 109.46710 * 63.95305 * 1 2 3 26 26 H 1.09001 * 109.46823 * 183.95395 * 1 2 3 27 27 H 1.08994 * 109.46958 * 303.95594 * 1 2 3 28 28 H 1.09001 * 109.46404 * 54.14015 * 3 2 1 29 29 H 1.09004 * 109.46108 * 294.17221 * 3 2 1 30 30 H 1.08997 * 109.49978 * 299.23733 * 4 3 2 31 31 H 1.09001 * 109.53171 * 179.14368 * 4 3 2 32 32 H 1.08999 * 109.52616 * 182.44088 * 5 4 3 33 33 H 1.09003 * 109.52430 * 62.25047 * 5 4 3 34 34 H 1.09002 * 109.47398 * 295.00125 * 8 6 5 35 35 H 1.09001 * 109.47194 * 55.00305 * 8 6 5 36 36 H 0.97000 * 120.00420 * 0.02562 * 9 8 6 37 37 H 1.09002 * 109.47152 * 300.00160 * 12 10 9 38 38 H 1.09001 * 109.46980 * 60.00059 * 12 10 9 39 39 H 1.09002 * 109.47045 * 299.99967 * 13 12 10 40 40 H 1.09001 * 109.47375 * 60.00042 * 13 12 10 41 41 H 1.09002 * 109.47153 * 299.99992 * 14 13 12 42 42 H 1.09001 * 109.47289 * 60.00075 * 14 13 12 43 43 H 1.09001 * 109.47230 * 299.99295 * 15 14 13 44 44 H 1.08988 * 109.47529 * 59.99846 * 15 14 13 45 45 H 0.96996 * 119.99885 * 179.97438 * 19 18 16 46 46 H 1.08996 * 109.46318 * 65.82518 * 24 2 1 47 47 H 1.08996 * 109.46327 * 305.85277 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3342 0.1468 5 6 4.1189 0.5370 -1.0143 6 6 3.5182 -0.8715 -1.0207 7 1 3.7820 -1.3838 -0.0956 8 6 4.0681 -1.6559 -2.2138 9 7 3.5872 -3.0383 -2.1527 10 6 3.9468 -3.9196 -3.1069 11 8 4.6681 -3.5681 -4.0163 12 6 3.4516 -5.3416 -3.0445 13 6 4.0026 -6.1263 -4.2367 14 6 3.5004 -7.5701 -4.1730 15 6 4.0509 -8.3547 -5.3656 16 6 3.5557 -9.7767 -5.3031 17 1 2.9123 -10.0895 -4.4940 18 6 3.9231 -10.6782 -6.2795 19 7 4.7062 -10.2972 -7.2651 20 14 3.3100 -12.4409 -6.2017 21 1 2.4508 -12.6137 -5.0030 22 1 2.5219 -12.7452 -7.4231 23 1 4.4693 -13.3651 -6.1177 24 6 1.9953 -0.7708 -1.1337 25 1 -0.3633 0.4513 -0.9234 26 1 -0.3633 -1.0252 0.0709 27 1 -0.3633 0.5740 0.8524 28 1 1.5634 1.9258 0.8329 29 1 1.7325 1.8608 -0.9376 30 1 3.7813 0.8568 1.0906 31 1 3.9104 2.3510 0.1315 32 1 5.1998 0.4714 -0.8904 33 1 3.8888 1.0354 -1.9560 34 1 3.7282 -1.1934 -3.1405 35 1 5.1576 -1.6485 -2.1823 36 1 3.0099 -3.3194 -1.4256 37 1 3.7907 -5.8041 -2.1175 38 1 2.3621 -5.3487 -3.0766 39 1 3.6638 -5.6640 -5.1638 40 1 5.0921 -6.1193 -4.2041 41 1 3.8396 -8.0322 -3.2458 42 1 2.4109 -7.5777 -4.2054 43 1 3.7113 -7.8926 -6.2925 44 1 5.1403 -8.3473 -5.3337 45 1 4.9650 -10.9315 -7.9518 46 1 1.7325 -0.2709 -2.0659 47 1 1.5635 -1.7715 -1.1241 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588354550.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:18 Heat of formation + Delta-G solvation = -96.830304 kcal Electronic energy + Delta-G solvation = -21679.416176 eV Core-core repulsion = 18473.383184 eV Total energy + Delta-G solvation = -3206.032992 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.96396 -39.92016 -36.77726 -36.24674 -34.60897 -34.29134 -32.30482 -31.26598 -28.07099 -27.65685 -26.48930 -24.20641 -23.69770 -22.49743 -21.77425 -21.33090 -20.56313 -18.42136 -17.92136 -17.04887 -16.96561 -16.60783 -16.46951 -16.31218 -15.67837 -15.41083 -15.26424 -14.83974 -14.55160 -14.24359 -14.07389 -13.78206 -13.56915 -13.50699 -13.32987 -13.17545 -13.06649 -12.83688 -12.40124 -12.30857 -12.13996 -12.12690 -12.05900 -11.64744 -11.49633 -11.36978 -11.34794 -11.30046 -11.13861 -10.72573 -10.55430 -10.08777 -9.32047 -8.18459 -6.30543 1.40591 1.41644 1.55188 1.67464 2.23027 2.42386 2.92765 3.14154 3.72743 3.77053 3.85239 3.90064 4.08063 4.12325 4.16745 4.26562 4.40262 4.52113 4.53318 4.55152 4.63884 4.66942 4.70779 4.78447 4.79984 4.81917 4.86383 4.90217 4.95477 5.03143 5.05633 5.16069 5.20658 5.25724 5.34412 5.37099 5.43279 5.50070 5.58575 5.78965 5.88798 6.08334 6.11646 6.25815 6.57321 6.88211 7.29673 7.39004 8.94003 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.038601 B = 0.002160 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.189992 B =12957.630824 C =13482.086643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.551 5.551 3 C 0.050 3.950 4 C -0.112 4.112 5 C -0.116 4.116 6 C -0.083 4.083 7 H 0.092 0.908 8 C 0.126 3.874 9 N -0.718 5.718 10 C 0.510 3.490 11 O -0.590 6.590 12 C -0.129 4.129 13 C -0.096 4.096 14 C -0.096 4.096 15 C 0.017 3.983 16 C -0.540 4.540 17 H 0.066 0.934 18 C -0.009 4.009 19 N -0.938 5.938 20 Si 0.971 3.029 21 H -0.257 1.257 22 H -0.279 1.279 23 H -0.279 1.279 24 C 0.060 3.940 25 H 0.022 0.978 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.028 0.972 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.059 0.941 34 H 0.052 0.948 35 H 0.060 0.940 36 H 0.416 0.584 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.041 0.959 40 H 0.042 0.958 41 H 0.061 0.939 42 H 0.061 0.939 43 H -0.016 1.016 44 H -0.016 1.016 45 H 0.263 0.737 46 H 0.025 0.975 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.870 25.243 20.198 33.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.275 5.275 3 C -0.077 4.077 4 C -0.150 4.150 5 C -0.154 4.154 6 C -0.102 4.102 7 H 0.110 0.890 8 C 0.002 3.998 9 N -0.371 5.371 10 C 0.298 3.702 11 O -0.471 6.471 12 C -0.168 4.168 13 C -0.135 4.135 14 C -0.133 4.133 15 C -0.020 4.020 16 C -0.578 4.578 17 H 0.085 0.915 18 C -0.206 4.206 19 N -0.579 5.579 20 Si 0.795 3.205 21 H -0.181 1.181 22 H -0.205 1.205 23 H -0.205 1.205 24 C -0.068 4.068 25 H 0.040 0.960 26 H 0.092 0.908 27 H 0.096 0.904 28 H 0.101 0.899 29 H 0.046 0.954 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.254 0.746 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.003 0.997 44 H 0.003 0.997 45 H 0.071 0.929 46 H 0.044 0.956 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.142 25.237 19.859 32.898 hybrid contribution -0.410 -0.565 -1.214 1.400 sum -7.551 24.672 18.645 31.834 Atomic orbital electron populations 1.22406 0.86456 1.02891 1.00747 1.61947 1.08355 1.14218 1.43020 1.22190 0.96138 0.88804 1.00600 1.21551 0.93890 1.00807 0.98703 1.21580 1.00672 0.93991 0.99147 1.21323 0.94530 0.96649 0.97729 0.88971 1.21348 0.98909 0.81021 0.98515 1.45939 1.52442 1.10539 1.28170 1.21201 0.79382 0.88655 0.80952 1.90695 1.39155 1.80662 1.36556 1.21675 1.03792 0.90132 1.01204 1.21245 0.99790 0.94966 0.97451 1.21448 1.00041 0.93394 0.98422 1.19072 0.94515 0.94594 0.93800 1.21786 1.30025 0.96439 1.09507 0.91538 1.26119 0.95341 1.04138 0.95011 1.70143 1.37120 1.36814 1.13797 0.85316 0.78214 0.78491 0.78501 1.18051 1.20494 1.20482 1.22130 0.94693 0.98699 0.91258 0.95958 0.90803 0.90426 0.89868 0.95385 0.91015 0.90055 0.90743 0.92240 0.92941 0.92140 0.74625 0.86314 0.86354 0.93963 0.93925 0.92023 0.92057 0.99743 0.99713 0.92873 0.95628 0.90107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.59 127.69 1.22 1.46 16 2 N -0.55 -6.81 4.91 -922.57 -4.53 -11.34 16 3 C 0.05 0.54 5.46 86.33 0.47 1.01 16 4 C -0.11 -1.06 6.09 30.65 0.19 -0.87 16 5 C -0.12 -1.30 5.29 30.67 0.16 -1.14 16 6 C -0.08 -1.04 2.39 -10.74 -0.03 -1.06 16 7 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 8 C 0.13 2.24 5.07 86.38 0.44 2.68 16 9 N -0.72 -13.14 5.29 -463.05 -2.45 -15.59 16 10 C 0.51 13.88 7.83 87.66 0.69 14.57 16 11 O -0.59 -22.40 15.98 -3.02 -0.05 -22.45 16 12 C -0.13 -3.18 5.70 29.85 0.17 -3.01 16 13 C -0.10 -3.53 4.50 30.59 0.14 -3.39 16 14 C -0.10 -3.94 5.15 30.59 0.16 -3.78 16 15 C 0.02 0.96 4.97 29.85 0.15 1.11 16 16 C -0.54 -31.56 9.11 25.60 0.23 -31.33 16 17 H 0.07 3.65 7.74 -2.91 -0.02 3.62 16 18 C -0.01 -0.54 5.46 84.65 0.46 -0.08 16 19 N -0.94 -59.53 13.29 21.45 0.28 -59.24 16 20 Si 0.97 45.14 29.54 68.60 2.03 47.17 16 21 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 22 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 23 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 24 C 0.06 0.77 4.61 86.33 0.40 1.17 16 25 H 0.02 0.24 8.14 -2.38 -0.02 0.22 16 26 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.08 0.65 8.10 -2.39 -0.02 0.63 16 28 H 0.08 0.74 8.09 -2.39 -0.02 0.72 16 29 H 0.03 0.33 8.14 -2.38 -0.02 0.31 16 30 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.42 4.91 7.67 -92.71 -0.71 4.20 16 37 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.04 1.70 8.10 -2.39 -0.02 1.68 16 40 H 0.04 1.71 8.10 -2.39 -0.02 1.69 16 41 H 0.06 2.36 8.14 -2.39 -0.02 2.35 16 42 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 43 H -0.02 -0.97 8.14 -2.39 -0.02 -0.98 16 44 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 45 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 46 H 0.03 0.38 8.14 -2.39 -0.02 0.37 16 47 H 0.08 0.94 7.20 -2.39 -0.02 0.93 16 Total: -1.00 -75.57 373.27 0.32 -75.25 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: 0.19 Total: 8.87 kcal Atomic # 6 Polarization: -27.52 SS G_CDS: 4.85 Total: -22.67 kcal Atomic # 7 Polarization: -79.48 SS G_CDS: -6.70 Total: -86.18 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: -0.05 Total: -22.45 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -75.57 0.32 -75.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588354550.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.580 kcal (2) G-P(sol) polarization free energy of solvation -75.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds