Wall clock time and date at job start Tue Mar 31 2020 05:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46846 * 111.00030 * 2 1 4 4 C 1.53040 * 109.52646 * 185.84021 * 3 2 1 5 5 C 1.53122 * 109.27461 * 300.82236 * 4 3 2 6 6 C 1.53117 * 109.16387 * 57.65084 * 5 4 3 7 7 H 1.08997 * 109.53342 * 62.30965 * 6 5 4 8 8 C 1.52997 * 109.50385 * 182.40291 * 6 5 4 9 9 N 1.46506 * 109.47289 * 184.80334 * 8 6 5 10 10 C 1.34774 * 120.00072 * 180.02562 * 9 8 6 11 11 O 1.21284 * 120.00066 * 0.02562 * 10 9 8 12 12 C 1.50696 * 119.99838 * 180.02562 * 10 9 8 13 13 C 1.53005 * 109.47353 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.47245 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.46947 * 179.97438 * 14 13 12 16 16 C 1.50706 * 109.47238 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99515 * 0.02562 * 16 15 14 18 18 C 1.37870 * 120.00176 * 180.02562 * 16 15 14 19 19 N 1.31520 * 119.99883 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00043 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47216 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47389 * 119.99848 * 20 18 16 23 23 H 1.48501 * 109.47057 * 239.99829 * 20 18 16 24 24 C 1.46845 * 111.00082 * 124.20966 * 2 1 3 25 25 H 1.09001 * 109.46805 * 295.78966 * 1 2 3 26 26 H 1.09000 * 109.47399 * 55.78691 * 1 2 3 27 27 H 1.08993 * 109.47172 * 175.79245 * 1 2 3 28 28 H 1.08998 * 109.46460 * 305.85639 * 3 2 1 29 29 H 1.09001 * 109.46353 * 65.82722 * 3 2 1 30 30 H 1.09003 * 109.50294 * 60.75592 * 4 3 2 31 31 H 1.08994 * 109.50630 * 180.84040 * 4 3 2 32 32 H 1.09005 * 109.52474 * 297.74213 * 5 4 3 33 33 H 1.09006 * 109.52390 * 177.55829 * 5 4 3 34 34 H 1.09001 * 109.47289 * 64.80206 * 8 6 5 35 35 H 1.09004 * 109.47261 * 304.80462 * 8 6 5 36 36 H 0.97001 * 119.99251 * 0.02562 * 9 8 6 37 37 H 1.09004 * 109.47043 * 299.99952 * 12 10 9 38 38 H 1.09001 * 109.47324 * 59.99585 * 12 10 9 39 39 H 1.08996 * 109.46524 * 299.99867 * 13 12 10 40 40 H 1.08992 * 109.46876 * 59.99534 * 13 12 10 41 41 H 1.09004 * 109.47108 * 299.99712 * 14 13 12 42 42 H 1.09001 * 109.47367 * 59.99410 * 14 13 12 43 43 H 1.08992 * 109.47303 * 300.00275 * 15 14 13 44 44 H 1.09001 * 109.46832 * 59.99979 * 15 14 13 45 45 H 0.97004 * 119.99507 * 180.02562 * 19 18 16 46 46 H 1.09000 * 109.46359 * 54.14555 * 24 2 1 47 47 H 1.09005 * 109.45456 * 294.17266 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3342 -0.1468 5 6 4.1188 0.5370 1.0144 6 6 3.5181 -0.8714 1.0209 7 1 3.7814 -1.3842 0.0958 8 6 4.0680 -1.6558 2.2139 9 7 3.5833 -3.0371 2.1555 10 6 3.9414 -3.9179 3.1107 11 8 4.6646 -3.5669 4.0188 12 6 3.4432 -5.3388 3.0503 13 6 3.9920 -6.1229 4.2441 14 6 3.4856 -7.5654 4.1831 15 6 4.0349 -8.3495 5.3765 16 6 3.5357 -9.7702 5.3168 17 1 2.8915 -10.0826 4.5083 18 6 3.9014 -10.6711 6.2944 19 7 4.6856 -10.2904 7.2792 20 14 3.2832 -12.4322 6.2200 21 1 2.4225 -12.6046 5.0222 22 1 4.4398 -13.3598 6.1365 23 1 2.4953 -12.7323 7.4424 24 6 1.9952 -0.7708 1.1337 25 1 -0.3633 0.4471 0.9253 26 1 -0.3634 0.5778 -0.8498 27 1 -0.3633 -1.0248 -0.0754 28 1 1.5634 1.9257 -0.8329 29 1 1.7325 1.8608 0.9376 30 1 3.7814 0.8567 -1.0906 31 1 3.9098 2.3513 -0.1317 32 1 3.8887 1.0355 1.9561 33 1 5.1998 0.4714 0.8906 34 1 3.7310 -1.1913 3.1406 35 1 5.1575 -1.6514 2.1805 36 1 3.0045 -3.3176 1.4294 37 1 2.3536 -5.3435 3.0829 38 1 3.7809 -5.8032 2.1238 39 1 5.0814 -6.1182 4.2119 40 1 3.6538 -5.6583 5.1703 41 1 2.3961 -7.5697 4.2155 42 1 3.8233 -8.0302 3.2568 43 1 5.1243 -8.3452 5.3437 44 1 3.6975 -7.8848 6.3029 45 1 4.9432 -10.9244 7.9668 46 1 1.5634 -1.7715 1.1242 47 1 1.7324 -0.2707 2.0659 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588354551.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:21 Heat of formation + Delta-G solvation = -74.025706 kcal Electronic energy + Delta-G solvation = -21679.249869 eV Core-core repulsion = 18474.205758 eV Total energy + Delta-G solvation = -3205.044111 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.06765 -39.13901 -35.65293 -34.78800 -33.66387 -32.59800 -31.49734 -29.66516 -27.30842 -26.61507 -25.13129 -23.34346 -22.47269 -21.68672 -20.47938 -19.96886 -19.82935 -16.91532 -16.26546 -16.15310 -15.98454 -15.81484 -15.48184 -15.02227 -14.80347 -14.42472 -14.11538 -13.86259 -13.50950 -13.24621 -13.03768 -12.75315 -12.61613 -12.51836 -12.12981 -11.83584 -11.65714 -11.57284 -11.50090 -11.11033 -10.97307 -10.92456 -10.78654 -10.50369 -10.46354 -10.37857 -9.76594 -9.58248 -9.18912 -9.12649 -8.94229 -8.79515 -8.28637 -5.93242 -3.95564 2.77952 3.16192 3.34532 3.41624 3.43749 3.45724 4.28362 4.32626 4.43477 4.50776 4.61580 4.77276 4.91967 4.95717 5.00577 5.03364 5.11536 5.28170 5.29560 5.31106 5.38567 5.41082 5.42696 5.42997 5.46514 5.50063 5.58068 5.69581 5.77133 5.90892 5.97294 6.17945 6.33784 6.36829 6.58845 6.59498 6.61127 6.87888 7.05971 7.23384 7.47651 7.77013 7.93061 8.08617 8.31440 8.50431 9.12452 9.67983 11.18114 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.038571 B = 0.002161 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.760582 B =12953.536937 C =13479.114568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.544 5.544 3 C 0.053 3.947 4 C -0.116 4.116 5 C -0.115 4.115 6 C -0.096 4.096 7 H 0.087 0.913 8 C 0.124 3.876 9 N -0.739 5.739 10 C 0.511 3.489 11 O -0.536 6.536 12 C -0.139 4.139 13 C -0.103 4.103 14 C -0.110 4.110 15 C 0.019 3.981 16 C -0.519 4.519 17 H 0.055 0.945 18 C 0.054 3.946 19 N -0.895 5.895 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.285 1.285 24 C 0.059 3.941 25 H 0.025 0.975 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.033 0.967 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.399 0.601 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.046 0.954 42 H 0.046 0.954 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.259 0.741 46 H 0.076 0.924 47 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.235 25.439 -17.747 31.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.268 5.268 3 C -0.075 4.075 4 C -0.154 4.154 5 C -0.153 4.153 6 C -0.115 4.115 7 H 0.105 0.895 8 C 0.000 4.000 9 N -0.393 5.393 10 C 0.298 3.702 11 O -0.412 6.412 12 C -0.179 4.179 13 C -0.141 4.141 14 C -0.148 4.148 15 C -0.018 4.018 16 C -0.557 4.557 17 H 0.073 0.927 18 C -0.147 4.147 19 N -0.535 5.535 20 Si 0.719 3.281 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.069 4.069 25 H 0.043 0.957 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.051 0.949 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.234 0.766 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.034 0.966 44 H 0.034 0.966 45 H 0.069 0.931 46 H 0.095 0.905 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -5.470 25.410 -17.347 31.249 hybrid contribution -0.919 -0.695 0.432 1.231 sum -6.389 24.715 -16.914 30.623 Atomic orbital electron populations 1.22363 0.87033 1.02522 1.00492 1.61907 1.07723 1.13775 1.43386 1.22127 0.95767 0.89134 1.00466 1.21573 0.94277 1.00251 0.99285 1.21564 1.00376 0.94440 0.98914 1.21433 0.94599 0.96556 0.98911 0.89482 1.21325 0.99303 0.81475 0.97896 1.46132 1.53288 1.10886 1.28962 1.21101 0.80036 0.87965 0.81058 1.90706 1.36454 1.79741 1.34321 1.21794 1.02320 0.91171 1.02602 1.21446 1.01010 0.95876 0.95789 1.21649 0.99499 0.92768 1.00869 1.19106 0.96341 0.94035 0.92338 1.21325 1.29760 0.95536 1.09075 0.92702 1.25053 0.95306 0.98761 0.95565 1.69992 1.35764 1.34877 1.12844 0.86552 0.78599 0.85062 0.77866 1.19785 1.21065 1.21080 1.22158 0.94742 0.98471 0.91510 0.95650 0.91314 0.91121 0.90757 0.94910 0.90919 0.91266 0.91820 0.91139 0.91703 0.91264 0.76632 0.89226 0.89148 0.91821 0.91860 0.93504 0.93480 0.96576 0.96596 0.93125 0.90534 0.94562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.59 60.06 0.58 0.72 16 2 N -0.54 -3.84 4.91 -242.97 -1.19 -5.04 16 3 C 0.05 0.33 5.46 -3.83 -0.02 0.31 16 4 C -0.12 -0.65 6.09 -26.65 -0.16 -0.82 16 5 C -0.11 -0.71 5.29 -26.61 -0.14 -0.86 16 6 C -0.10 -0.67 2.39 -90.54 -0.22 -0.88 16 7 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 8 C 0.12 1.15 5.07 -4.04 -0.02 1.13 16 9 N -0.74 -7.39 5.29 -60.29 -0.32 -7.71 16 10 C 0.51 7.20 7.83 -10.99 -0.09 7.11 16 11 O -0.54 -9.96 15.98 5.55 0.09 -9.87 16 12 C -0.14 -1.87 5.70 -27.88 -0.16 -2.03 16 13 C -0.10 -1.88 4.50 -26.73 -0.12 -2.00 16 14 C -0.11 -2.31 5.15 -26.73 -0.14 -2.44 16 15 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 16 C -0.52 -15.10 9.11 -34.44 -0.31 -15.42 16 17 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 18 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 19 N -0.90 -27.77 13.29 55.43 0.74 -27.03 16 20 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 21 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 24 C 0.06 0.42 4.61 -3.84 -0.02 0.41 16 25 H 0.02 0.15 8.14 -51.93 -0.42 -0.27 16 26 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 29 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.40 2.94 7.66 -40.82 -0.31 2.62 16 37 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 40 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 41 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 46 H 0.08 0.53 7.19 -51.93 -0.37 0.16 16 47 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 373.25 15.07 5.62 5.62 Total: -1.00 -33.97 373.25 -10.23 -44.20 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -9.10 Total: -4.32 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: -1.06 Total: -12.91 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: -0.78 Total: -39.78 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.09 Total: -9.87 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.97 -10.23 -44.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588354551.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.824 kcal (2) G-P(sol) polarization free energy of solvation -33.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds