Wall clock time and date at job start Tue Mar 31 2020 05:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46846 * 111.00030 * 2 1 4 4 C 1.53040 * 109.52646 * 185.84021 * 3 2 1 5 5 C 1.53122 * 109.27461 * 300.82236 * 4 3 2 6 6 C 1.53117 * 109.16387 * 57.65084 * 5 4 3 7 7 H 1.08997 * 109.53342 * 62.30965 * 6 5 4 8 8 C 1.52997 * 109.50385 * 182.40291 * 6 5 4 9 9 N 1.46506 * 109.47289 * 184.80334 * 8 6 5 10 10 C 1.34774 * 120.00072 * 180.02562 * 9 8 6 11 11 O 1.21284 * 120.00066 * 0.02562 * 10 9 8 12 12 C 1.50696 * 119.99838 * 180.02562 * 10 9 8 13 13 C 1.53005 * 109.47353 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.47245 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.46947 * 179.97438 * 14 13 12 16 16 C 1.50706 * 109.47238 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99515 * 0.02562 * 16 15 14 18 18 C 1.37870 * 120.00176 * 180.02562 * 16 15 14 19 19 N 1.31520 * 119.99883 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00043 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47216 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47389 * 119.99848 * 20 18 16 23 23 H 1.48501 * 109.47057 * 239.99829 * 20 18 16 24 24 C 1.46845 * 111.00082 * 124.20966 * 2 1 3 25 25 H 1.09001 * 109.46805 * 295.78966 * 1 2 3 26 26 H 1.09000 * 109.47399 * 55.78691 * 1 2 3 27 27 H 1.08993 * 109.47172 * 175.79245 * 1 2 3 28 28 H 1.08998 * 109.46460 * 305.85639 * 3 2 1 29 29 H 1.09001 * 109.46353 * 65.82722 * 3 2 1 30 30 H 1.09003 * 109.50294 * 60.75592 * 4 3 2 31 31 H 1.08994 * 109.50630 * 180.84040 * 4 3 2 32 32 H 1.09005 * 109.52474 * 297.74213 * 5 4 3 33 33 H 1.09006 * 109.52390 * 177.55829 * 5 4 3 34 34 H 1.09001 * 109.47289 * 64.80206 * 8 6 5 35 35 H 1.09004 * 109.47261 * 304.80462 * 8 6 5 36 36 H 0.97001 * 119.99251 * 0.02562 * 9 8 6 37 37 H 1.09004 * 109.47043 * 299.99952 * 12 10 9 38 38 H 1.09001 * 109.47324 * 59.99585 * 12 10 9 39 39 H 1.08996 * 109.46524 * 299.99867 * 13 12 10 40 40 H 1.08992 * 109.46876 * 59.99534 * 13 12 10 41 41 H 1.09004 * 109.47108 * 299.99712 * 14 13 12 42 42 H 1.09001 * 109.47367 * 59.99410 * 14 13 12 43 43 H 1.08992 * 109.47303 * 300.00275 * 15 14 13 44 44 H 1.09001 * 109.46832 * 59.99979 * 15 14 13 45 45 H 0.97004 * 119.99507 * 180.02562 * 19 18 16 46 46 H 1.09000 * 109.46359 * 54.14555 * 24 2 1 47 47 H 1.09005 * 109.45456 * 294.17266 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3342 -0.1468 5 6 4.1188 0.5370 1.0144 6 6 3.5181 -0.8714 1.0209 7 1 3.7814 -1.3842 0.0958 8 6 4.0680 -1.6558 2.2139 9 7 3.5833 -3.0371 2.1555 10 6 3.9414 -3.9179 3.1107 11 8 4.6646 -3.5669 4.0188 12 6 3.4432 -5.3388 3.0503 13 6 3.9920 -6.1229 4.2441 14 6 3.4856 -7.5654 4.1831 15 6 4.0349 -8.3495 5.3765 16 6 3.5357 -9.7702 5.3168 17 1 2.8915 -10.0826 4.5083 18 6 3.9014 -10.6711 6.2944 19 7 4.6856 -10.2904 7.2792 20 14 3.2832 -12.4322 6.2200 21 1 2.4225 -12.6046 5.0222 22 1 4.4398 -13.3598 6.1365 23 1 2.4953 -12.7323 7.4424 24 6 1.9952 -0.7708 1.1337 25 1 -0.3633 0.4471 0.9253 26 1 -0.3634 0.5778 -0.8498 27 1 -0.3633 -1.0248 -0.0754 28 1 1.5634 1.9257 -0.8329 29 1 1.7325 1.8608 0.9376 30 1 3.7814 0.8567 -1.0906 31 1 3.9098 2.3513 -0.1317 32 1 3.8887 1.0355 1.9561 33 1 5.1998 0.4714 0.8906 34 1 3.7310 -1.1913 3.1406 35 1 5.1575 -1.6514 2.1805 36 1 3.0045 -3.3176 1.4294 37 1 2.3536 -5.3435 3.0829 38 1 3.7809 -5.8032 2.1238 39 1 5.0814 -6.1182 4.2119 40 1 3.6538 -5.6583 5.1703 41 1 2.3961 -7.5697 4.2155 42 1 3.8233 -8.0302 3.2568 43 1 5.1243 -8.3452 5.3437 44 1 3.6975 -7.8848 6.3029 45 1 4.9432 -10.9244 7.9668 46 1 1.5634 -1.7715 1.1242 47 1 1.7324 -0.2707 2.0659 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588354551.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:20 Heat of formation + Delta-G solvation = -96.824330 kcal Electronic energy + Delta-G solvation = -21680.238491 eV Core-core repulsion = 18474.205758 eV Total energy + Delta-G solvation = -3206.032733 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.96399 -39.92017 -36.77729 -36.24668 -34.60888 -34.29164 -32.30478 -31.26555 -28.07145 -27.65716 -26.48971 -24.20738 -23.69789 -22.49701 -21.77415 -21.33038 -20.56385 -18.42120 -17.92182 -17.04881 -16.96555 -16.60777 -16.46901 -16.31286 -15.67850 -15.41078 -15.26427 -14.83968 -14.55173 -14.24494 -14.07279 -13.78268 -13.56938 -13.50631 -13.32972 -13.17541 -13.06667 -12.83686 -12.40124 -12.30851 -12.14024 -12.12696 -12.05837 -11.64731 -11.49645 -11.37001 -11.34800 -11.30038 -11.13861 -10.72612 -10.55434 -10.08811 -9.32043 -8.18468 -6.30557 1.40604 1.41658 1.55195 1.67432 2.22994 2.42384 2.92753 3.14166 3.72738 3.77083 3.85203 3.90037 4.08022 4.12333 4.16750 4.26557 4.40285 4.52081 4.53279 4.55149 4.63855 4.66905 4.70762 4.78444 4.79944 4.81945 4.86367 4.90215 4.95472 5.03160 5.05653 5.16058 5.20651 5.25698 5.34404 5.37093 5.43272 5.50006 5.58574 5.78944 5.88790 6.08330 6.11659 6.25813 6.57308 6.88185 7.29640 7.39015 8.93985 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.038571 B = 0.002161 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.760582 B =12953.536937 C =13479.114568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.551 5.551 3 C 0.050 3.950 4 C -0.112 4.112 5 C -0.116 4.116 6 C -0.083 4.083 7 H 0.092 0.908 8 C 0.126 3.874 9 N -0.718 5.718 10 C 0.510 3.490 11 O -0.590 6.590 12 C -0.129 4.129 13 C -0.096 4.096 14 C -0.096 4.096 15 C 0.017 3.983 16 C -0.540 4.540 17 H 0.066 0.934 18 C -0.009 4.009 19 N -0.938 5.938 20 Si 0.971 3.029 21 H -0.257 1.257 22 H -0.279 1.279 23 H -0.279 1.279 24 C 0.060 3.940 25 H 0.022 0.978 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.028 0.972 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.052 0.948 35 H 0.060 0.940 36 H 0.416 0.584 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.042 0.958 40 H 0.041 0.959 41 H 0.061 0.939 42 H 0.061 0.939 43 H -0.016 1.016 44 H -0.016 1.016 45 H 0.263 0.737 46 H 0.081 0.919 47 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.820 25.228 -20.233 33.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.275 5.275 3 C -0.077 4.077 4 C -0.150 4.150 5 C -0.154 4.154 6 C -0.102 4.102 7 H 0.110 0.890 8 C 0.002 3.998 9 N -0.371 5.371 10 C 0.298 3.702 11 O -0.471 6.471 12 C -0.168 4.168 13 C -0.135 4.135 14 C -0.133 4.133 15 C -0.020 4.020 16 C -0.578 4.578 17 H 0.085 0.915 18 C -0.206 4.206 19 N -0.579 5.579 20 Si 0.795 3.205 21 H -0.181 1.181 22 H -0.205 1.205 23 H -0.205 1.205 24 C -0.068 4.068 25 H 0.040 0.960 26 H 0.096 0.904 27 H 0.092 0.908 28 H 0.101 0.899 29 H 0.046 0.954 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.254 0.746 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.003 0.997 44 H 0.003 0.997 45 H 0.071 0.929 46 H 0.099 0.901 47 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -7.092 25.221 -19.895 32.897 hybrid contribution -0.412 -0.564 1.215 1.402 sum -7.504 24.657 -18.679 31.831 Atomic orbital electron populations 1.22404 0.86457 1.02905 1.00734 1.61944 1.08355 1.14219 1.43021 1.22189 0.96143 0.88805 1.00599 1.21553 0.93890 1.00806 0.98703 1.21580 1.00674 0.93986 0.99145 1.21320 0.94531 0.96649 0.97730 0.88971 1.21349 0.98877 0.81052 0.98517 1.45940 1.52318 1.10650 1.28181 1.21198 0.79417 0.88632 0.80939 1.90697 1.39095 1.80631 1.36650 1.21676 1.03782 0.90157 1.01191 1.21244 0.99788 0.94980 0.97439 1.21448 1.00030 0.93406 0.98420 1.19073 0.94516 0.94594 0.93798 1.21785 1.29944 0.96525 1.09500 0.91537 1.26117 0.95350 1.04123 0.95016 1.70148 1.37123 1.36823 1.13780 0.85315 0.78218 0.78488 0.78497 1.18052 1.20479 1.20496 1.22131 0.94697 0.98700 0.91254 0.95962 0.90425 0.90801 0.89869 0.95387 0.91013 0.90053 0.92240 0.90740 0.92942 0.92135 0.74624 0.86362 0.86306 0.93922 0.93967 0.92048 0.92031 0.99714 0.99744 0.92876 0.90104 0.95633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.59 127.69 1.22 1.46 16 2 N -0.55 -6.81 4.91 -922.61 -4.53 -11.34 16 3 C 0.05 0.54 5.46 86.33 0.47 1.01 16 4 C -0.11 -1.06 6.09 30.65 0.19 -0.87 16 5 C -0.12 -1.30 5.29 30.67 0.16 -1.14 16 6 C -0.08 -1.04 2.39 -10.74 -0.03 -1.06 16 7 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 8 C 0.13 2.24 5.07 86.38 0.44 2.68 16 9 N -0.72 -13.14 5.29 -463.05 -2.45 -15.59 16 10 C 0.51 13.88 7.83 87.66 0.69 14.57 16 11 O -0.59 -22.40 15.98 -3.04 -0.05 -22.45 16 12 C -0.13 -3.18 5.70 29.85 0.17 -3.01 16 13 C -0.10 -3.53 4.50 30.59 0.14 -3.39 16 14 C -0.10 -3.94 5.15 30.59 0.16 -3.78 16 15 C 0.02 0.96 4.97 29.85 0.15 1.11 16 16 C -0.54 -31.56 9.11 25.60 0.23 -31.32 16 17 H 0.07 3.65 7.74 -2.91 -0.02 3.62 16 18 C -0.01 -0.54 5.46 84.65 0.46 -0.08 16 19 N -0.94 -59.53 13.29 21.45 0.28 -59.24 16 20 Si 0.97 45.14 29.54 68.60 2.03 47.17 16 21 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 22 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 23 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 24 C 0.06 0.77 4.61 86.33 0.40 1.17 16 25 H 0.02 0.24 8.14 -2.39 -0.02 0.22 16 26 H 0.08 0.65 8.09 -2.39 -0.02 0.63 16 27 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.08 0.74 8.09 -2.39 -0.02 0.72 16 29 H 0.03 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 33 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 34 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 36 H 0.42 4.91 7.66 -92.71 -0.71 4.20 16 37 H 0.12 2.31 8.14 -2.38 -0.02 2.29 16 38 H 0.12 2.33 8.14 -2.39 -0.02 2.31 16 39 H 0.04 1.71 8.10 -2.39 -0.02 1.70 16 40 H 0.04 1.70 8.10 -2.39 -0.02 1.68 16 41 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 42 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 43 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 44 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 45 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 46 H 0.08 0.94 7.19 -2.39 -0.02 0.93 16 47 H 0.03 0.38 8.14 -2.38 -0.02 0.36 16 Total: -1.00 -75.58 373.25 0.32 -75.25 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: 0.19 Total: 8.87 kcal Atomic # 6 Polarization: -27.51 SS G_CDS: 4.85 Total: -22.66 kcal Atomic # 7 Polarization: -79.48 SS G_CDS: -6.70 Total: -86.18 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: -0.05 Total: -22.45 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -75.58 0.32 -75.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588354551.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.572 kcal (2) G-P(sol) polarization free energy of solvation -75.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds