Wall clock time and date at job start Tue Mar 31 2020 05:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34773 * 120.00532 * 2 1 4 4 O 1.21280 * 120.00350 * 179.97438 * 3 2 1 5 5 C 1.50703 * 119.99745 * 0.02562 * 3 2 1 6 6 C 1.53000 * 109.46682 * 179.97438 * 5 3 2 7 7 C 1.53007 * 109.46452 * 179.97438 * 6 5 3 8 8 C 1.53009 * 109.46853 * 180.02562 * 7 6 5 9 9 C 1.50695 * 109.46971 * 180.02562 * 8 7 6 10 10 H 1.08002 * 120.00168 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99766 * 179.97438 * 9 8 7 12 12 N 1.31508 * 119.99878 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99750 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47508 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.47020 * 120.00042 * 13 11 9 16 16 H 1.48500 * 109.47253 * 240.00202 * 13 11 9 17 17 C 1.46507 * 119.99826 * 179.97438 * 2 1 3 18 18 H 1.09002 * 109.50471 * 180.02562 * 17 2 1 19 19 C 1.53121 * 109.53550 * 59.90141 * 17 2 1 20 20 C 1.53114 * 109.15992 * 182.38490 * 19 17 2 21 21 C 1.53036 * 109.28047 * 57.65972 * 20 19 17 22 22 N 1.46844 * 109.52085 * 300.81827 * 21 20 19 23 23 C 1.46899 * 111.00001 * 185.83807 * 22 21 20 24 24 C 1.46847 * 111.19784 * 61.73796 * 22 21 20 25 25 H 1.08994 * 109.47741 * 269.99940 * 1 2 3 26 26 H 1.09005 * 109.46647 * 30.00123 * 1 2 3 27 27 H 1.09005 * 109.47433 * 149.99384 * 1 2 3 28 28 H 1.08995 * 109.46657 * 299.99687 * 5 3 2 29 29 H 1.09002 * 109.47245 * 59.99721 * 5 3 2 30 30 H 1.08995 * 109.47589 * 299.99446 * 6 5 3 31 31 H 1.08997 * 109.47645 * 60.00227 * 6 5 3 32 32 H 1.09000 * 109.47567 * 299.99735 * 7 6 5 33 33 H 1.08997 * 109.47111 * 60.00676 * 7 6 5 34 34 H 1.09000 * 109.46704 * 300.00125 * 8 7 6 35 35 H 1.08996 * 109.47094 * 59.99626 * 8 7 6 36 36 H 0.97008 * 119.99685 * 180.02562 * 12 11 9 37 37 H 1.08999 * 109.52397 * 302.29573 * 19 17 2 38 38 H 1.09007 * 109.51903 * 62.47722 * 19 17 2 39 39 H 1.09002 * 109.50460 * 297.71044 * 20 19 17 40 40 H 1.09003 * 109.50241 * 177.59784 * 20 19 17 41 41 H 1.08993 * 109.46063 * 180.80377 * 21 20 19 42 42 H 1.08999 * 109.45181 * 60.82626 * 21 20 19 43 43 H 1.08993 * 109.47368 * 295.78636 * 23 22 21 44 44 H 1.08994 * 109.47044 * 55.79151 * 23 22 21 45 45 H 1.09001 * 109.46986 * 175.78753 * 23 22 21 46 46 H 1.08999 * 109.46500 * 178.23954 * 24 22 21 47 47 H 1.09004 * 109.45191 * 58.27467 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1671 0.0005 5 6 1.3855 2.4723 0.0006 6 6 2.3798 3.6351 0.0011 7 6 1.6148 4.9602 0.0011 8 6 2.6092 6.1231 0.0009 9 6 1.8557 7.4282 0.0015 10 1 0.7757 7.4282 0.0023 11 6 2.5452 8.6222 0.0020 12 7 3.8603 8.6221 0.0015 13 14 1.6113 10.2400 0.0020 14 1 0.1513 9.9687 0.0020 15 1 1.9696 11.0184 1.2149 16 1 1.9704 11.0189 -1.2102 17 6 2.1974 -1.2688 0.0006 18 1 3.2692 -1.0703 0.0009 19 6 1.8267 -2.0746 -1.2476 20 6 2.5507 -3.4232 -1.2085 21 6 2.1697 -4.1642 0.0752 22 7 2.5453 -3.3529 1.2401 23 6 2.3213 -4.0912 2.4901 24 6 1.8267 -2.0723 1.2491 25 1 -0.3634 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3634 -0.8900 -0.5139 28 1 0.7586 2.5302 -0.8892 29 1 0.7591 2.5298 0.8908 30 1 3.0064 3.5770 0.8910 31 1 3.0065 3.5778 -0.8889 32 1 0.9885 5.0181 -0.8891 33 1 0.9880 5.0178 0.8909 34 1 3.2359 6.0653 0.8909 35 1 3.2358 6.0652 -0.8890 36 1 4.3454 9.4622 0.0023 37 1 0.7495 -2.2399 -1.2678 38 1 2.1285 -1.5247 -2.1391 39 1 3.6280 -3.2586 -1.2276 40 1 2.2576 -4.0188 -2.0731 41 1 2.6946 -5.1187 0.1129 42 1 1.0941 -4.3405 0.0869 43 1 1.2561 -4.2890 2.6094 44 1 2.8647 -5.0354 2.4568 45 1 2.6769 -3.4968 3.3318 46 1 2.1024 -1.5074 2.1396 47 1 0.7527 -2.2587 1.2555 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588544031.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:23 Heat of formation + Delta-G solvation = -56.131820 kcal Electronic energy + Delta-G solvation = -22331.323551 eV Core-core repulsion = 19127.055378 eV Total energy + Delta-G solvation = -3204.268173 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.41626 -38.77263 -35.74149 -34.85930 -33.34825 -32.58010 -30.77173 -29.29190 -27.12864 -27.03650 -25.67463 -23.44323 -23.17187 -21.86668 -20.00927 -19.94292 -19.01630 -16.95315 -16.62138 -16.12176 -15.99708 -15.59786 -15.31618 -14.79548 -14.54682 -14.40494 -14.09214 -13.62554 -13.48786 -13.19507 -12.92971 -12.70726 -12.66990 -12.47527 -12.20123 -12.02548 -11.68270 -11.59895 -11.56381 -11.22085 -10.98144 -10.90164 -10.85519 -10.49926 -10.45930 -10.37033 -9.70265 -9.58061 -9.18657 -8.94200 -8.83966 -8.66863 -8.28596 -5.93126 -3.95473 2.71678 2.80107 3.34513 3.41594 3.45554 3.64669 4.40907 4.45039 4.50816 4.57494 4.68243 4.79757 4.87266 4.96027 5.04035 5.09390 5.12479 5.20369 5.26085 5.30904 5.35211 5.41181 5.42586 5.48456 5.48878 5.51379 5.59340 5.74066 5.87194 5.90120 6.01987 6.17657 6.30276 6.37598 6.58384 6.65642 6.71607 6.87802 7.05343 7.22596 7.32664 7.77113 7.93274 8.08740 8.25569 8.50510 9.12553 9.68058 11.18260 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.042550 B = 0.002425 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.893032 B =11544.853765 C =11590.207333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.620 5.620 3 C 0.514 3.486 4 O -0.531 6.531 5 C -0.136 4.136 6 C -0.104 4.104 7 C -0.110 4.110 8 C 0.019 3.981 9 C -0.519 4.519 10 H 0.055 0.945 11 C 0.054 3.946 12 N -0.895 5.895 13 Si 0.891 3.109 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.284 1.284 17 C 0.141 3.859 18 H 0.110 0.890 19 C -0.130 4.130 20 C -0.115 4.115 21 C 0.054 3.946 22 N -0.541 5.541 23 C 0.027 3.973 24 C 0.051 3.949 25 H 0.054 0.946 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.016 0.984 35 H 0.016 0.984 36 H 0.259 0.741 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.032 0.968 43 H 0.024 0.976 44 H 0.069 0.931 45 H 0.070 0.930 46 H 0.078 0.922 47 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.451 -28.491 0.488 29.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.355 5.355 3 C 0.304 3.696 4 O -0.407 6.407 5 C -0.176 4.176 6 C -0.142 4.142 7 C -0.147 4.147 8 C -0.018 4.018 9 C -0.557 4.557 10 H 0.073 0.927 11 C -0.146 4.146 12 N -0.535 5.535 13 Si 0.719 3.281 14 H -0.198 1.198 15 H -0.211 1.211 16 H -0.211 1.211 17 C 0.037 3.963 18 H 0.128 0.872 19 C -0.168 4.168 20 C -0.153 4.153 21 C -0.074 4.074 22 N -0.266 5.266 23 C -0.121 4.121 24 C -0.078 4.078 25 H 0.073 0.927 26 H 0.096 0.904 27 H 0.087 0.913 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.034 0.966 35 H 0.034 0.966 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.051 0.949 43 H 0.043 0.957 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.096 0.904 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -7.152 -28.255 0.459 29.150 hybrid contribution -1.507 0.702 0.129 1.668 sum -8.659 -27.553 0.588 28.888 Atomic orbital electron populations 1.21783 0.79855 1.03301 1.01809 1.47954 1.06816 1.05715 1.75032 1.21143 0.88267 0.85405 0.74824 1.90699 1.14169 1.87175 1.48634 1.21822 1.00063 0.91975 1.03737 1.21466 0.97043 0.92719 1.02961 1.21645 0.99054 0.94019 1.00002 1.19104 0.94077 0.91281 0.97330 1.21322 0.93001 0.91198 1.50198 0.92721 1.25049 0.94842 0.99236 0.95516 1.69988 1.06041 1.26369 1.51062 0.86559 0.80067 0.83959 0.77534 1.19799 1.21066 1.21060 1.20983 0.99219 0.82564 0.93499 0.87170 1.21946 1.00362 0.96172 0.98334 1.21554 1.01724 0.95472 0.96592 1.22143 0.98324 0.96527 0.90410 1.61803 1.57868 1.04200 1.02729 1.22348 0.99214 0.98805 0.91761 1.22382 0.95753 0.90533 0.99107 0.92706 0.90415 0.91316 0.89194 0.89218 0.91809 0.91820 0.93526 0.93519 0.96583 0.96579 0.93112 0.91936 0.91103 0.90600 0.91012 0.90529 0.94948 0.95721 0.91180 0.91148 0.90380 0.94684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.57 9.28 59.84 0.56 1.13 16 2 N -0.62 -6.89 2.77 -173.84 -0.48 -7.37 16 3 C 0.51 7.56 7.67 -10.99 -0.08 7.47 16 4 O -0.53 -10.05 15.31 5.56 0.09 -9.96 16 5 C -0.14 -1.88 4.25 -27.88 -0.12 -2.00 16 6 C -0.10 -1.91 4.50 -26.73 -0.12 -2.03 16 7 C -0.11 -2.29 5.15 -26.72 -0.14 -2.43 16 8 C 0.02 0.51 4.97 -27.88 -0.14 0.38 16 9 C -0.52 -15.10 9.11 -34.44 -0.31 -15.41 16 10 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 11 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 12 N -0.90 -27.77 13.29 55.43 0.74 -27.04 16 13 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 14 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 15 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 16 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 17 C 0.14 1.51 2.69 -67.85 -0.18 1.32 16 18 H 0.11 1.52 6.90 -51.93 -0.36 1.17 16 19 C -0.13 -1.10 5.31 -26.61 -0.14 -1.24 16 20 C -0.12 -0.85 6.09 -26.65 -0.16 -1.01 16 21 C 0.05 0.39 5.46 -3.84 -0.02 0.36 16 22 N -0.54 -4.76 4.91 -242.97 -1.19 -5.95 16 23 C 0.03 0.19 9.59 60.06 0.58 0.76 16 24 C 0.05 0.48 4.76 -3.84 -0.02 0.46 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.08 0.54 6.44 -51.93 -0.33 0.20 16 27 H 0.07 0.41 6.39 -51.93 -0.33 0.08 16 28 H 0.09 1.07 7.40 -51.93 -0.38 0.69 16 29 H 0.09 1.08 8.11 -51.93 -0.42 0.66 16 30 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 31 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 32 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 37 H 0.06 0.46 6.58 -51.93 -0.34 0.12 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.08 0.48 8.08 -51.93 -0.42 0.06 16 42 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 43 H 0.02 0.16 8.14 -51.93 -0.42 -0.27 16 44 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 45 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.08 0.82 8.12 -51.93 -0.42 0.39 16 47 H 0.03 0.29 7.64 -51.93 -0.40 -0.10 16 LS Contribution 367.01 15.07 5.53 5.53 Total: -1.00 -33.84 367.01 -9.61 -43.45 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: -8.86 Total: -4.97 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: -0.40 Total: -10.72 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: -0.94 Total: -40.36 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.09 Total: -9.96 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.84 -9.61 -43.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588544031.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.682 kcal (2) G-P(sol) polarization free energy of solvation -33.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds