Wall clock time and date at job start Tue Mar 31 2020 05:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34777 * 120.00345 * 2 1 4 4 O 1.21283 * 120.00463 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.99675 * 359.72090 * 3 2 1 6 6 C 1.53004 * 109.47208 * 180.27843 * 5 3 2 7 7 C 1.52997 * 109.47000 * 179.97438 * 6 5 3 8 8 C 1.53011 * 109.46712 * 179.97438 * 7 6 5 9 9 C 1.50700 * 109.46921 * 180.02562 * 8 7 6 10 10 H 1.08002 * 119.99765 * 0.02562 * 9 8 7 11 11 C 1.37871 * 120.00083 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00147 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 120.00278 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46793 * 59.99999 * 13 11 9 15 15 H 1.48494 * 109.47228 * 180.02562 * 13 11 9 16 16 H 1.48492 * 109.47108 * 300.00114 * 13 11 9 17 17 C 1.46497 * 120.00129 * 179.97438 * 2 1 3 18 18 H 1.09005 * 109.50613 * 180.08127 * 17 2 1 19 19 C 1.53124 * 109.50359 * 300.19893 * 17 2 1 20 20 C 1.53123 * 109.16094 * 177.59078 * 19 17 2 21 21 C 1.53029 * 109.28118 * 302.34645 * 20 19 17 22 22 N 1.46856 * 109.52111 * 59.17932 * 21 20 19 23 23 C 1.46904 * 110.99478 * 174.16268 * 22 21 20 24 24 C 1.46847 * 111.19565 * 298.25724 * 22 21 20 25 25 H 1.08997 * 109.47115 * 90.00316 * 1 2 3 26 26 H 1.08995 * 109.47364 * 210.00706 * 1 2 3 27 27 H 1.09002 * 109.47090 * 330.00257 * 1 2 3 28 28 H 1.09009 * 109.47352 * 300.27556 * 5 3 2 29 29 H 1.08998 * 109.47585 * 60.27844 * 5 3 2 30 30 H 1.09000 * 109.46887 * 300.00372 * 6 5 3 31 31 H 1.08998 * 109.46846 * 59.99549 * 6 5 3 32 32 H 1.08995 * 109.47672 * 299.99669 * 7 6 5 33 33 H 1.09001 * 109.47109 * 60.00906 * 7 6 5 34 34 H 1.09003 * 109.46627 * 299.99937 * 8 7 6 35 35 H 1.08992 * 109.47177 * 60.00618 * 8 7 6 36 36 H 0.96999 * 120.00235 * 180.02562 * 12 11 9 37 37 H 1.08996 * 109.52186 * 297.49899 * 19 17 2 38 38 H 1.09004 * 109.52302 * 57.68966 * 19 17 2 39 39 H 1.09002 * 109.50158 * 182.40234 * 20 19 17 40 40 H 1.08996 * 109.53098 * 62.31187 * 20 19 17 41 41 H 1.09000 * 109.46293 * 299.16698 * 21 20 19 42 42 H 1.08990 * 109.45596 * 179.18950 * 21 20 19 43 43 H 1.09008 * 109.46486 * 184.21071 * 23 22 21 44 44 H 1.08998 * 109.47281 * 304.20501 * 23 22 21 45 45 H 1.08999 * 109.47582 * 64.21176 * 23 22 21 46 46 H 1.08996 * 109.46429 * 301.72293 * 24 22 21 47 47 H 1.09004 * 109.44840 * 181.75679 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 -0.0064 6 6 2.3797 3.6352 -0.0120 7 6 1.6147 4.9602 -0.0191 8 6 2.6090 6.1231 -0.0241 9 6 1.8556 7.4282 -0.0305 10 1 0.7755 7.4282 -0.0305 11 6 2.5449 8.6222 -0.0352 12 7 3.8601 8.6222 -0.0337 13 14 1.6110 10.2400 -0.0438 14 1 0.7558 10.3242 1.1673 15 1 2.5760 11.3686 -0.0485 16 1 0.7587 10.3130 -1.2576 17 6 2.1975 -1.2687 0.0006 18 1 3.2693 -1.0701 0.0019 19 6 1.8243 -2.0739 1.2484 20 6 2.5477 -3.4230 1.2109 21 6 2.1684 -4.1642 -0.0731 22 7 2.5463 -3.3533 -1.2377 23 6 2.3239 -4.0919 -2.4879 24 6 1.8283 -2.0724 -1.2483 25 1 -0.3633 -0.0001 -1.0276 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 0.7588 2.5257 -0.8967 29 1 0.7587 2.5344 0.8833 30 1 3.0064 3.5817 0.8782 31 1 3.0064 3.5730 -0.9017 32 1 0.9884 5.0134 -0.9095 33 1 0.9878 5.0225 0.8704 34 1 3.2350 6.0697 0.8667 35 1 3.2362 6.0610 -0.9133 36 1 4.3451 9.4623 -0.0366 37 1 2.1251 -1.5240 2.1401 38 1 0.7470 -2.2386 1.2670 39 1 2.2529 -4.0181 2.0753 40 1 3.6251 -3.2595 1.2320 41 1 1.0927 -4.3400 -0.0867 42 1 2.6929 -5.1188 -0.1096 43 1 2.6812 -3.4980 -3.3292 44 1 2.8668 -5.0365 -2.4534 45 1 1.2587 -4.2893 -2.6088 46 1 0.7543 -2.2581 -1.2564 47 1 2.1060 -1.5080 -2.1386 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588544032.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:25 Heat of formation + Delta-G solvation = -56.039979 kcal Electronic energy + Delta-G solvation = -22331.383407 eV Core-core repulsion = 19127.119216 eV Total energy + Delta-G solvation = -3204.264191 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.41595 -38.77118 -35.74159 -34.85810 -33.34651 -32.57744 -30.77131 -29.29042 -27.12715 -27.03755 -25.67229 -23.44249 -23.17125 -21.86463 -20.00773 -19.94209 -19.01612 -16.95258 -16.62103 -16.11506 -15.99666 -15.59726 -15.31548 -14.79526 -14.54701 -14.41063 -14.09219 -13.62493 -13.48942 -13.19330 -12.92931 -12.70483 -12.66893 -12.46602 -12.20046 -12.02509 -11.68215 -11.60178 -11.56186 -11.22058 -10.95578 -10.89731 -10.85577 -10.51088 -10.48534 -10.36483 -9.70216 -9.57531 -9.18545 -8.95916 -8.83934 -8.66849 -8.27757 -5.92546 -3.95148 2.71525 2.80310 3.36903 3.41218 3.43434 3.64690 4.40908 4.45062 4.51009 4.57500 4.68300 4.79786 4.87290 4.96044 5.04060 5.09416 5.12472 5.20404 5.26080 5.30911 5.35217 5.41296 5.42809 5.48474 5.48889 5.51389 5.59350 5.74091 5.87226 5.90131 6.01998 6.17693 6.30343 6.37681 6.58417 6.65619 6.71629 6.87883 7.05389 7.22667 7.32673 7.76762 7.93517 8.09071 8.25586 8.50668 9.12422 9.68254 11.18763 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.042494 B = 0.002425 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.762318 B =11542.867551 C =11588.453098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.620 5.620 3 C 0.514 3.486 4 O -0.531 6.531 5 C -0.136 4.136 6 C -0.104 4.104 7 C -0.110 4.110 8 C 0.020 3.980 9 C -0.520 4.520 10 H 0.053 0.947 11 C 0.055 3.945 12 N -0.895 5.895 13 Si 0.892 3.108 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.277 1.277 17 C 0.141 3.859 18 H 0.110 0.890 19 C -0.130 4.130 20 C -0.115 4.115 21 C 0.054 3.946 22 N -0.541 5.541 23 C 0.027 3.973 24 C 0.051 3.949 25 H 0.054 0.946 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.016 0.984 35 H 0.016 0.984 36 H 0.260 0.740 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.032 0.968 42 H 0.076 0.924 43 H 0.070 0.930 44 H 0.069 0.931 45 H 0.024 0.976 46 H 0.035 0.965 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.427 -28.468 -0.402 29.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.355 5.355 3 C 0.304 3.696 4 O -0.407 6.407 5 C -0.176 4.176 6 C -0.142 4.142 7 C -0.147 4.147 8 C -0.017 4.017 9 C -0.559 4.559 10 H 0.072 0.928 11 C -0.146 4.146 12 N -0.535 5.535 13 Si 0.719 3.281 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.203 1.203 17 C 0.037 3.963 18 H 0.128 0.872 19 C -0.168 4.168 20 C -0.153 4.153 21 C -0.074 4.074 22 N -0.266 5.266 23 C -0.121 4.121 24 C -0.078 4.078 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.096 0.904 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.034 0.966 35 H 0.034 0.966 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.051 0.949 42 H 0.095 0.905 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.043 0.957 46 H 0.053 0.947 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.117 -28.227 -0.373 29.113 hybrid contribution -1.534 0.695 -0.131 1.689 sum -8.652 -27.533 -0.504 28.864 Atomic orbital electron populations 1.21782 0.79854 1.03298 1.01811 1.47954 1.06816 1.05717 1.75035 1.21143 0.88267 0.85405 0.74823 1.90700 1.14167 1.87176 1.48633 1.21823 1.00064 0.91977 1.03736 1.21466 0.97044 0.92716 1.02962 1.21644 0.99060 0.94025 0.99996 1.19094 0.94064 0.91244 0.97317 1.21248 0.92927 0.91229 1.50478 0.92830 1.25042 0.94843 0.99205 0.95490 1.69965 1.06041 1.26603 1.50870 0.86671 0.79570 0.83285 0.78526 1.20298 1.21329 1.20303 1.20983 0.99218 0.82563 0.93496 0.87166 1.21949 1.00359 0.96172 0.98339 1.21552 1.01731 0.95471 0.96588 1.22143 0.98314 0.96533 0.90416 1.61811 1.57856 1.04188 1.02739 1.22352 0.99220 0.98802 0.91759 1.22381 0.95764 0.90526 0.99104 0.92702 0.91315 0.90419 0.89215 0.89198 0.91812 0.91816 0.93518 0.93529 0.96592 0.96586 0.92993 0.91105 0.91932 0.91017 0.90603 0.94946 0.90531 0.91147 0.91179 0.95719 0.94680 0.90378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.57 9.28 59.84 0.56 1.13 16 2 N -0.62 -6.89 2.77 -173.85 -0.48 -7.37 16 3 C 0.51 7.56 7.67 -10.98 -0.08 7.47 16 4 O -0.53 -10.05 15.31 5.55 0.09 -9.97 16 5 C -0.14 -1.88 4.25 -27.88 -0.12 -2.00 16 6 C -0.10 -1.91 4.50 -26.73 -0.12 -2.03 16 7 C -0.11 -2.29 5.15 -26.73 -0.14 -2.43 16 8 C 0.02 0.53 4.97 -27.88 -0.14 0.40 16 9 C -0.52 -15.15 9.11 -34.44 -0.31 -15.46 16 10 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 11 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 12 N -0.90 -27.79 13.29 55.43 0.74 -27.06 16 13 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 15 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 C 0.14 1.51 2.69 -67.85 -0.18 1.32 16 18 H 0.11 1.53 6.90 -51.93 -0.36 1.17 16 19 C -0.13 -1.10 5.30 -26.60 -0.14 -1.24 16 20 C -0.12 -0.85 6.09 -26.65 -0.16 -1.01 16 21 C 0.05 0.39 5.46 -3.83 -0.02 0.36 16 22 N -0.54 -4.76 4.91 -242.96 -1.19 -5.96 16 23 C 0.03 0.19 9.59 60.07 0.58 0.76 16 24 C 0.05 0.48 4.76 -3.84 -0.02 0.46 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.07 0.41 6.38 -51.93 -0.33 0.08 16 27 H 0.08 0.54 6.45 -51.93 -0.33 0.20 16 28 H 0.09 1.08 8.11 -51.92 -0.42 0.66 16 29 H 0.09 1.07 7.41 -51.93 -0.38 0.69 16 30 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 31 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 32 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.46 6.57 -51.93 -0.34 0.12 16 39 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 42 H 0.08 0.48 8.08 -51.93 -0.42 0.06 16 43 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 44 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 45 H 0.02 0.16 8.14 -51.93 -0.42 -0.27 16 46 H 0.04 0.29 7.64 -51.93 -0.40 -0.10 16 47 H 0.08 0.82 8.12 -51.93 -0.42 0.40 16 LS Contribution 367.01 15.07 5.53 5.53 Total: -1.00 -33.79 367.01 -9.61 -43.41 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -8.86 Total: -4.90 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: -0.40 Total: -10.74 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: -0.94 Total: -40.38 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.09 Total: -9.97 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.79 -9.61 -43.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588544032.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.635 kcal (2) G-P(sol) polarization free energy of solvation -33.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds