Wall clock time and date at job start Tue Mar 31 2020 05:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46893 * 111.00008 * 2 1 4 4 C 1.46902 * 110.99916 * 123.95490 * 2 1 3 5 5 C 1.53002 * 109.47007 * 75.70435 * 4 2 1 6 6 H 1.09000 * 110.88520 * 301.31728 * 5 4 2 7 7 C 1.55156 * 111.00483 * 65.20174 * 5 4 2 8 8 C 1.54323 * 102.94167 * 153.57370 * 7 5 4 9 9 N 1.47027 * 107.27111 * 337.80932 * 8 7 5 10 10 C 1.34775 * 125.64706 * 178.98547 * 9 8 7 11 11 O 1.21279 * 119.99934 * 179.97438 * 10 9 8 12 12 C 1.50711 * 119.99989 * 359.97438 * 10 9 8 13 13 C 1.53001 * 109.46869 * 180.02562 * 12 10 9 14 14 C 1.52993 * 109.46960 * 179.97438 * 13 12 10 15 15 C 1.53001 * 109.47488 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.47586 * 179.97438 * 15 14 13 17 17 H 1.08004 * 119.99803 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00220 * 180.02562 * 16 15 14 19 19 N 1.31512 * 119.99890 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99929 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47151 * 60.00163 * 20 18 16 22 22 H 1.48504 * 109.46925 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47090 * 299.99472 * 20 18 16 24 24 C 1.47423 * 108.70504 * 358.93611 * 9 8 7 25 25 H 1.09005 * 109.47489 * 56.04661 * 1 2 3 26 26 H 1.09006 * 109.47087 * 176.04455 * 1 2 3 27 27 H 1.08997 * 109.47415 * 296.04400 * 1 2 3 28 28 H 1.09004 * 109.46988 * 55.11178 * 3 2 1 29 29 H 1.09007 * 109.47289 * 175.10678 * 3 2 1 30 30 H 1.08997 * 109.47364 * 295.10608 * 3 2 1 31 31 H 1.08996 * 109.47177 * 195.70426 * 4 2 1 32 32 H 1.09004 * 109.47123 * 315.70631 * 4 2 1 33 33 H 1.09000 * 110.72109 * 271.93732 * 7 5 4 34 34 H 1.09003 * 110.71974 * 35.21169 * 7 5 4 35 35 H 1.09005 * 109.88458 * 97.22410 * 8 7 5 36 36 H 1.08996 * 109.88579 * 218.23344 * 8 7 5 37 37 H 1.08998 * 109.46967 * 299.99523 * 12 10 9 38 38 H 1.08996 * 109.47318 * 60.00003 * 12 10 9 39 39 H 1.08998 * 109.46862 * 299.99496 * 13 12 10 40 40 H 1.08996 * 109.47223 * 59.99853 * 13 12 10 41 41 H 1.09001 * 109.47115 * 299.99973 * 14 13 12 42 42 H 1.09004 * 109.47333 * 59.99569 * 14 13 12 43 43 H 1.09001 * 109.46956 * 300.00114 * 15 14 13 44 44 H 1.09004 * 109.47150 * 59.99500 * 15 14 13 45 45 H 0.96999 * 120.00249 * 180.02562 * 19 18 16 46 46 H 1.08996 * 110.36729 * 265.29707 * 24 9 8 47 47 H 1.09000 * 110.36668 * 142.96978 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.8456 -2.2627 0.8576 6 1 0.8010 -2.5237 0.6881 7 6 2.7288 -2.6951 -0.3425 8 6 2.9959 -4.1876 -0.0550 9 7 2.7991 -4.3964 1.3870 10 6 2.9193 -5.5726 2.0339 11 8 2.7337 -5.6279 3.2312 12 6 3.2844 -6.8192 1.2696 13 6 3.3541 -8.0059 2.2328 14 6 3.7241 -9.2715 1.4568 15 6 3.7944 -10.4581 2.4201 16 6 4.1582 -11.7049 1.6556 17 1 4.3224 -11.6558 0.5893 18 6 4.2805 -12.9083 2.3173 19 7 4.0801 -12.9680 3.6157 20 14 4.7307 -14.4537 1.3696 21 1 6.0517 -14.2672 0.7173 22 1 4.7991 -15.6055 2.3046 23 1 3.6998 -14.7171 0.3337 24 6 2.4498 -3.1059 2.0082 25 1 -0.3634 0.5740 -0.8525 26 1 -0.3633 -1.0253 -0.0709 27 1 -0.3634 0.4512 0.9233 28 1 1.5768 1.9212 0.8430 29 1 3.0816 1.3437 0.0877 30 1 1.7185 1.8668 -0.9305 31 1 3.0491 -0.5267 1.2803 32 1 1.4388 -0.5074 2.0385 33 1 2.1892 -2.5739 -1.2818 34 1 3.6621 -2.1322 -0.3571 35 1 2.2954 -4.8048 -0.6179 36 1 4.0189 -4.4414 -0.3325 37 1 2.5284 -7.0133 0.5087 38 1 4.2541 -6.6814 0.7915 39 1 4.1098 -7.8121 2.9940 40 1 2.3841 -8.1436 2.7106 41 1 2.9681 -9.4651 0.6959 42 1 4.6939 -9.1341 0.9787 43 1 4.5507 -10.2643 3.1807 44 1 2.8248 -10.5957 2.8986 45 1 4.1664 -13.8146 4.0814 46 1 3.3422 -2.6220 2.4050 47 1 1.7134 -3.2523 2.7984 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588675336.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:30 Heat of formation + Delta-G solvation = -55.621323 kcal Electronic energy + Delta-G solvation = -21775.774881 eV Core-core repulsion = 18571.528845 eV Total energy + Delta-G solvation = -3204.246037 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.20568 -38.47198 -36.86291 -34.83738 -32.71416 -32.24329 -29.83463 -29.59006 -28.05328 -27.00893 -25.35462 -23.45014 -22.54537 -21.83669 -20.46001 -19.95556 -19.04426 -17.03838 -16.70995 -16.11384 -15.90231 -15.66695 -15.23811 -15.08209 -14.66178 -14.38218 -13.99365 -13.85471 -13.24748 -12.96607 -12.87800 -12.75890 -12.54238 -12.27637 -12.16105 -12.03636 -11.88876 -11.64669 -11.57624 -11.28447 -11.21770 -10.94959 -10.88629 -10.50718 -10.47195 -10.35782 -9.75513 -9.56433 -9.18128 -8.95396 -8.83758 -8.71482 -8.27074 -5.91918 -3.94395 2.76360 2.91398 3.37581 3.41726 3.44011 3.44252 4.25085 4.30311 4.40537 4.51647 4.69368 4.83228 4.86062 4.93387 4.96775 5.02255 5.04896 5.20093 5.26726 5.30861 5.38786 5.41063 5.41167 5.42590 5.43426 5.47989 5.60148 5.65534 5.78373 5.90959 5.93855 6.19130 6.19328 6.37322 6.52308 6.53140 6.59999 6.88960 7.06482 7.24389 7.48758 7.77510 7.94194 8.09696 8.27390 8.51475 9.13102 9.68897 11.19361 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.052410 B = 0.002172 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.117157 B =12888.859551 C =13160.006250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.544 5.544 3 C 0.024 3.976 4 C 0.064 3.936 5 C -0.097 4.097 6 H 0.084 0.916 7 C -0.111 4.111 8 C 0.097 3.903 9 N -0.626 5.626 10 C 0.528 3.472 11 O -0.536 6.536 12 C -0.133 4.133 13 C -0.104 4.104 14 C -0.110 4.110 15 C 0.020 3.980 16 C -0.520 4.520 17 H 0.054 0.946 18 C 0.055 3.945 19 N -0.895 5.895 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 C 0.111 3.889 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.026 0.974 28 H 0.025 0.975 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.040 0.960 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.046 0.954 42 H 0.046 0.954 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.260 0.740 46 H 0.065 0.935 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.157 29.971 -9.764 31.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.268 5.268 3 C -0.124 4.124 4 C -0.064 4.064 5 C -0.116 4.116 6 H 0.102 0.898 7 C -0.148 4.148 8 C -0.026 4.026 9 N -0.362 5.362 10 C 0.318 3.682 11 O -0.412 6.412 12 C -0.173 4.173 13 C -0.142 4.142 14 C -0.147 4.147 15 C -0.017 4.017 16 C -0.559 4.559 17 H 0.072 0.928 18 C -0.146 4.146 19 N -0.535 5.535 20 Si 0.720 3.280 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.013 4.013 25 H 0.086 0.914 26 H 0.089 0.911 27 H 0.044 0.956 28 H 0.043 0.957 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.059 0.941 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.034 0.966 44 H 0.034 0.966 45 H 0.070 0.930 46 H 0.083 0.917 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.086 29.493 -9.348 31.354 hybrid contribution -0.044 -0.436 0.203 0.483 sum -5.130 29.057 -9.145 30.891 Atomic orbital electron populations 1.22448 0.87203 1.02500 1.00502 1.61911 1.08108 1.13735 1.43053 1.22408 1.00458 0.88622 1.00932 1.22075 1.00433 0.92502 0.91421 1.22337 1.00324 0.93706 0.95254 0.89756 1.22525 1.00177 0.93419 0.98725 1.22109 1.01559 0.97515 0.81459 1.48588 1.70810 1.07855 1.08991 1.20827 0.76067 0.83564 0.87766 1.90706 1.49995 1.85462 1.15046 1.21771 1.03035 0.92521 0.99938 1.21462 1.02657 0.92723 0.97314 1.21646 0.99577 0.94558 0.98966 1.19096 0.97247 0.91118 0.94271 1.21250 1.46994 0.93220 0.94394 0.92808 1.25046 0.95634 0.99055 0.94877 1.69965 1.49894 1.25947 1.07666 0.86667 0.78966 0.82718 0.79668 1.20303 1.21338 1.20299 1.22135 0.99744 0.83632 0.95773 0.91368 0.91114 0.95577 0.95661 0.91325 0.91255 0.90442 0.94131 0.89650 0.90626 0.91292 0.91246 0.89259 0.89248 0.91821 0.91832 0.93489 0.93490 0.96586 0.96595 0.93013 0.91670 0.90569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.40 60.06 0.56 0.68 16 2 N -0.54 -3.34 4.74 -251.26 -1.19 -4.53 16 3 C 0.02 0.12 9.62 60.06 0.58 0.70 16 4 C 0.06 0.40 4.45 -3.82 -0.02 0.38 16 5 C -0.10 -0.69 3.06 -88.47 -0.27 -0.96 16 6 H 0.08 0.64 6.98 -51.93 -0.36 0.28 16 7 C -0.11 -0.74 6.22 -24.90 -0.15 -0.89 16 8 C 0.10 0.81 6.49 -3.06 -0.02 0.79 16 9 N -0.63 -7.35 3.33 -170.51 -0.57 -7.91 16 10 C 0.53 8.12 7.85 -10.98 -0.09 8.03 16 11 O -0.54 -10.46 16.24 5.56 0.09 -10.37 16 12 C -0.13 -1.92 4.89 -27.88 -0.14 -2.06 16 13 C -0.10 -1.94 4.50 -26.73 -0.12 -2.06 16 14 C -0.11 -2.33 5.15 -26.73 -0.14 -2.47 16 15 C 0.02 0.53 4.97 -27.88 -0.14 0.40 16 16 C -0.52 -15.22 9.11 -34.44 -0.31 -15.54 16 17 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 18 C 0.05 1.62 5.46 -17.82 -0.10 1.53 16 19 N -0.90 -27.85 13.29 55.43 0.74 -27.11 16 20 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 24 C 0.11 1.09 6.38 -2.53 -0.02 1.08 16 25 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.07 0.39 6.91 -51.93 -0.36 0.04 16 27 H 0.03 0.14 8.09 -51.93 -0.42 -0.28 16 28 H 0.02 0.12 8.13 -51.93 -0.42 -0.30 16 29 H 0.07 0.31 7.86 -51.93 -0.41 -0.10 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.08 0.45 7.74 -51.93 -0.40 0.05 16 32 H 0.04 0.26 7.96 -51.93 -0.41 -0.16 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.48 8.03 -51.93 -0.42 0.07 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 39 H 0.06 1.27 8.10 -51.93 -0.42 0.85 16 40 H 0.06 1.27 8.10 -51.93 -0.42 0.85 16 41 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 46 H 0.07 0.62 8.04 -51.93 -0.42 0.20 16 47 H 0.08 0.85 8.04 -51.93 -0.42 0.43 16 LS Contribution 375.57 15.07 5.66 5.66 Total: -1.00 -34.15 375.57 -9.73 -43.88 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: -9.07 Total: -6.34 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: -0.37 Total: -10.40 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: -1.02 Total: -39.55 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.09 Total: -10.37 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.15 -9.73 -43.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588675336.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.744 kcal (2) G-P(sol) polarization free energy of solvation -34.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds