Wall clock time and date at job start Tue Mar 31 2020 05:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46903 * 110.99621 * 2 1 4 4 C 1.46895 * 111.00014 * 123.95322 * 2 1 3 5 5 C 1.53002 * 109.47319 * 164.15863 * 4 2 1 6 6 H 1.09005 * 110.91225 * 60.07238 * 5 4 2 7 7 C 1.55159 * 111.00063 * 296.17699 * 5 4 2 8 8 C 1.54322 * 102.94021 * 206.41793 * 7 5 4 9 9 N 1.47031 * 107.26910 * 22.19663 * 8 7 5 10 10 C 1.34779 * 125.64527 * 181.02052 * 9 8 7 11 11 O 1.21279 * 119.99599 * 180.02562 * 10 9 8 12 12 C 1.50697 * 120.00299 * 0.02566 * 10 9 8 13 13 C 1.53000 * 109.47369 * 179.97438 * 12 10 9 14 14 C 1.53004 * 109.47280 * 180.02562 * 13 12 10 15 15 C 1.52996 * 109.46711 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.46801 * 179.97438 * 15 14 13 17 17 H 1.08004 * 120.00030 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00396 * 179.97438 * 16 15 14 19 19 N 1.31518 * 120.00659 * 180.02562 * 18 16 15 20 20 Si 1.86807 * 119.99864 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.46700 * 89.99990 * 20 18 16 22 22 H 1.48500 * 109.47250 * 210.00177 * 20 18 16 23 23 H 1.48500 * 109.46804 * 330.00298 * 20 18 16 24 24 C 1.47417 * 108.70539 * 1.05525 * 9 8 7 25 25 H 1.08997 * 109.47280 * 296.50035 * 1 2 3 26 26 H 1.08999 * 109.47509 * 56.50855 * 1 2 3 27 27 H 1.09001 * 109.46858 * 176.50553 * 1 2 3 28 28 H 1.08995 * 109.47112 * 183.94903 * 3 2 1 29 29 H 1.08994 * 109.47544 * 303.95562 * 3 2 1 30 30 H 1.09006 * 109.46631 * 63.95331 * 3 2 1 31 31 H 1.08997 * 109.47330 * 44.15686 * 4 2 1 32 32 H 1.09001 * 109.47664 * 284.15816 * 4 2 1 33 33 H 1.08997 * 110.71961 * 88.06095 * 7 5 4 34 34 H 1.08996 * 110.72130 * 324.77967 * 7 5 4 35 35 H 1.09000 * 109.88353 * 141.61118 * 8 7 5 36 36 H 1.09001 * 109.88656 * 262.78059 * 8 7 5 37 37 H 1.09001 * 109.47202 * 299.99679 * 12 10 9 38 38 H 1.09001 * 109.47112 * 59.99661 * 12 10 9 39 39 H 1.09001 * 109.46841 * 300.00077 * 13 12 10 40 40 H 1.09001 * 109.47136 * 59.99852 * 13 12 10 41 41 H 1.08995 * 109.46556 * 299.99904 * 14 13 12 42 42 H 1.08989 * 109.46935 * 60.00111 * 14 13 12 43 43 H 1.09003 * 109.47344 * 299.99500 * 15 14 13 44 44 H 1.08992 * 109.47729 * 59.99693 * 15 14 13 45 45 H 0.97000 * 120.00270 * 179.97438 * 19 18 16 46 46 H 1.08997 * 110.36726 * 94.70960 * 24 9 8 47 47 H 1.09000 * 110.37170 * 216.92557 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 3.4738 -1.0808 0.9001 6 1 4.0551 -0.1644 0.7971 7 6 3.6552 -1.9966 -0.3391 8 6 4.9771 -2.7324 -0.0345 9 7 5.1802 -2.6805 1.4208 10 6 6.2338 -3.1948 2.0856 11 8 6.2973 -3.0934 3.2925 12 6 7.3328 -3.8956 1.3294 13 6 8.3997 -4.3805 2.3130 14 6 9.5159 -5.0915 1.5452 15 6 10.5824 -5.5769 2.5290 16 6 11.6815 -6.2778 1.7728 17 1 11.6247 -6.3683 0.6981 18 6 12.7595 -6.8034 2.4529 19 7 13.7190 -7.4147 1.7929 20 14 12.8581 -6.6462 4.3117 21 1 12.2038 -7.8202 4.9431 22 1 14.2822 -6.5893 4.7288 23 1 12.1666 -5.4040 4.7407 24 6 4.0403 -1.9735 2.0323 25 1 -0.3634 0.4585 0.9196 26 1 -0.3634 0.5671 -0.8570 27 1 -0.3633 -1.0258 -0.0626 28 1 3.0827 1.3434 -0.0708 29 1 1.5898 1.9164 -0.8523 30 1 1.7042 1.8723 0.9234 31 1 1.4374 -1.6968 1.2383 32 1 1.8910 -0.1792 2.0502 33 1 3.7455 -1.4021 -1.2482 34 1 2.8299 -2.7040 -0.4200 35 1 4.9081 -3.7697 -0.3624 36 1 5.8037 -2.2352 -0.5421 37 1 6.9179 -4.7491 0.7932 38 1 7.7829 -3.2034 0.6179 39 1 8.8147 -3.5268 2.8489 40 1 7.9500 -5.0726 3.0249 41 1 9.1013 -5.9451 1.0091 42 1 9.9656 -4.3991 0.8337 43 1 10.9972 -4.7235 3.0655 44 1 10.1325 -6.2694 3.2402 45 1 14.4776 -7.7841 2.2714 46 1 3.2866 -2.6866 2.3661 47 1 4.3781 -1.3605 2.8679 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588675337.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:32 Heat of formation + Delta-G solvation = -52.401681 kcal Electronic energy + Delta-G solvation = -21837.889358 eV Core-core repulsion = 18633.782935 eV Total energy + Delta-G solvation = -3204.106423 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.26433 -38.52863 -36.89687 -34.98324 -32.70876 -32.26521 -30.12025 -29.73631 -28.07291 -27.17141 -25.55482 -23.44781 -22.57146 -21.65120 -20.47071 -19.99046 -19.08230 -17.11329 -16.81523 -16.49229 -15.96643 -15.68474 -15.29790 -15.14627 -14.71739 -14.14008 -14.09267 -13.90851 -13.24739 -13.03448 -12.97501 -12.83417 -12.57616 -12.32118 -12.20920 -12.17615 -12.04384 -11.89705 -11.70523 -11.33678 -11.26753 -11.08589 -10.92090 -10.69128 -10.49572 -9.92830 -9.78185 -9.61255 -9.38596 -9.08929 -8.86017 -8.76771 -8.46830 -5.98084 -3.95345 2.69595 2.86125 3.37402 3.41592 3.44194 3.50696 4.21605 4.26331 4.36937 4.52461 4.66916 4.78903 4.83463 4.90661 4.92819 4.98048 5.02043 5.17949 5.23626 5.27937 5.28880 5.33107 5.37128 5.38538 5.39799 5.45548 5.56491 5.61987 5.74401 5.82991 5.90487 6.07697 6.11309 6.23322 6.45852 6.50013 6.50717 6.72351 6.85838 7.02825 7.41070 7.43261 7.54366 7.87480 8.20487 8.61064 9.06985 9.65383 11.15363 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.050348 B = 0.002281 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.992568 B =12272.921425 C =12567.199234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.544 5.544 3 C 0.021 3.979 4 C 0.065 3.935 5 C -0.098 4.098 6 H 0.084 0.916 7 C -0.110 4.110 8 C 0.096 3.904 9 N -0.626 5.626 10 C 0.528 3.472 11 O -0.538 6.538 12 C -0.133 4.133 13 C -0.106 4.106 14 C -0.102 4.102 15 C -0.016 4.016 16 C -0.518 4.518 17 H 0.071 0.929 18 C 0.064 3.936 19 N -0.906 5.906 20 Si 0.880 3.120 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.264 1.264 24 C 0.111 3.889 25 H 0.024 0.976 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.025 0.975 31 H 0.078 0.922 32 H 0.039 0.961 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.016 0.984 44 H 0.011 0.989 45 H 0.262 0.738 46 H 0.065 0.935 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.686 16.636 -5.730 33.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.268 5.268 3 C -0.127 4.127 4 C -0.064 4.064 5 C -0.117 4.117 6 H 0.103 0.897 7 C -0.148 4.148 8 C -0.027 4.027 9 N -0.362 5.362 10 C 0.318 3.682 11 O -0.414 6.414 12 C -0.173 4.173 13 C -0.144 4.144 14 C -0.140 4.140 15 C -0.053 4.053 16 C -0.556 4.556 17 H 0.089 0.911 18 C -0.137 4.137 19 N -0.546 5.546 20 Si 0.707 3.293 21 H -0.203 1.203 22 H -0.215 1.215 23 H -0.189 1.189 24 C -0.013 4.013 25 H 0.043 0.957 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.044 0.956 31 H 0.096 0.904 32 H 0.058 0.942 33 H 0.104 0.896 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.034 0.966 44 H 0.029 0.971 45 H 0.072 0.928 46 H 0.084 0.916 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -28.242 16.327 -5.440 33.072 hybrid contribution -0.149 0.415 1.593 1.653 sum -28.391 16.743 -3.847 33.184 Atomic orbital electron populations 1.22394 0.87121 1.02361 1.00547 1.61932 1.07855 1.13983 1.43003 1.22451 1.01159 0.88624 1.00503 1.22053 0.94536 0.98350 0.91432 1.22350 0.95523 0.98581 0.95271 0.89745 1.22522 0.96031 0.97974 0.98286 1.22133 0.98476 1.01131 0.80952 1.48582 1.21763 1.57841 1.07981 1.20798 0.81639 0.77944 0.87799 1.90699 1.77938 1.58348 1.14461 1.21751 0.94927 1.00699 0.99920 1.21496 0.94928 1.00766 0.97253 1.21470 0.95118 0.98750 0.98631 1.19579 0.94334 0.96073 0.95333 1.21188 1.03633 1.35251 0.95572 0.91100 1.25047 0.95526 0.94737 0.98349 1.69922 1.10352 1.38434 1.35847 0.86773 0.76995 0.79242 0.86289 1.20324 1.21471 1.18906 1.22132 0.88374 0.94717 0.96035 0.95690 0.91270 0.91253 0.91079 0.91350 0.95614 0.90371 0.94242 0.89633 0.90533 0.91174 0.91216 0.89076 0.89090 0.91826 0.91817 0.92867 0.92841 0.96617 0.97052 0.92845 0.91644 0.90581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.54 60.07 0.57 0.69 16 2 N -0.54 -3.23 4.73 -251.26 -1.19 -4.42 16 3 C 0.02 0.11 9.39 60.07 0.56 0.67 16 4 C 0.06 0.38 4.43 -3.83 -0.02 0.37 16 5 C -0.10 -0.67 2.98 -88.47 -0.26 -0.93 16 6 H 0.08 0.61 6.86 -51.93 -0.36 0.25 16 7 C -0.11 -0.70 6.19 -24.90 -0.15 -0.86 16 8 C 0.10 0.77 6.49 -3.06 -0.02 0.75 16 9 N -0.63 -7.02 3.33 -170.52 -0.57 -7.59 16 10 C 0.53 7.76 7.85 -10.99 -0.09 7.67 16 11 O -0.54 -10.07 16.24 5.56 0.09 -9.98 16 12 C -0.13 -1.82 4.89 -27.88 -0.14 -1.96 16 13 C -0.11 -1.87 4.50 -26.73 -0.12 -1.99 16 14 C -0.10 -2.06 5.15 -26.73 -0.14 -2.20 16 15 C -0.02 -0.40 4.04 -27.89 -0.11 -0.51 16 16 C -0.52 -15.27 9.66 -34.44 -0.33 -15.60 16 17 H 0.07 2.21 7.99 -52.48 -0.42 1.79 16 18 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 19 N -0.91 -28.63 13.96 55.43 0.77 -27.85 16 20 Si 0.88 22.63 27.47 -169.99 -4.67 17.96 16 21 H -0.28 -7.01 7.11 56.52 0.40 -6.60 16 22 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 23 H -0.26 -6.62 6.54 56.52 0.37 -6.25 16 24 C 0.11 1.05 6.38 -2.53 -0.02 1.03 16 25 H 0.02 0.12 8.14 -51.93 -0.42 -0.31 16 26 H 0.07 0.29 8.13 -51.93 -0.42 -0.13 16 27 H 0.07 0.30 8.08 -51.93 -0.42 -0.11 16 28 H 0.07 0.38 6.74 -51.93 -0.35 0.03 16 29 H 0.07 0.31 8.12 -51.93 -0.42 -0.11 16 30 H 0.03 0.13 8.11 -51.93 -0.42 -0.29 16 31 H 0.08 0.44 7.95 -51.93 -0.41 0.03 16 32 H 0.04 0.24 8.03 -51.93 -0.42 -0.18 16 33 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.47 8.04 -51.93 -0.42 0.06 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 39 H 0.06 1.17 8.10 -51.93 -0.42 0.75 16 40 H 0.06 1.17 8.10 -51.93 -0.42 0.75 16 41 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.05 1.05 8.14 -51.94 -0.42 0.63 16 43 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 44 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 45 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 46 H 0.07 0.59 8.03 -51.93 -0.42 0.18 16 47 H 0.08 0.82 8.03 -51.93 -0.42 0.40 16 LS Contribution 371.96 15.07 5.61 5.61 Total: -1.00 -34.40 371.96 -9.36 -43.76 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: -9.05 Total: -6.46 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: -0.36 Total: -11.04 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: -0.98 Total: -39.86 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.09 Total: -9.98 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -4.67 Total: 17.96 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.40 -9.36 -43.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588675337.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.640 kcal (2) G-P(sol) polarization free energy of solvation -34.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds