Wall clock time and date at job start Tue Mar 31 2020 05:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46903 * 110.99621 * 2 1 4 4 C 1.46895 * 111.00014 * 123.95322 * 2 1 3 5 5 C 1.53002 * 109.47319 * 164.15863 * 4 2 1 6 6 H 1.09005 * 110.91225 * 60.07238 * 5 4 2 7 7 C 1.55159 * 111.00063 * 296.17699 * 5 4 2 8 8 C 1.54322 * 102.94021 * 206.41793 * 7 5 4 9 9 N 1.47031 * 107.26910 * 22.19663 * 8 7 5 10 10 C 1.34779 * 125.64527 * 181.02052 * 9 8 7 11 11 O 1.21279 * 119.99599 * 180.02562 * 10 9 8 12 12 C 1.50697 * 120.00299 * 0.02566 * 10 9 8 13 13 C 1.53000 * 109.47369 * 179.97438 * 12 10 9 14 14 C 1.53004 * 109.47280 * 180.02562 * 13 12 10 15 15 C 1.52996 * 109.46711 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.46801 * 179.97438 * 15 14 13 17 17 H 1.08004 * 120.00030 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00396 * 179.97438 * 16 15 14 19 19 N 1.31518 * 120.00659 * 180.02562 * 18 16 15 20 20 Si 1.86807 * 119.99864 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.46700 * 89.99990 * 20 18 16 22 22 H 1.48500 * 109.47250 * 210.00177 * 20 18 16 23 23 H 1.48500 * 109.46804 * 330.00298 * 20 18 16 24 24 C 1.47417 * 108.70539 * 1.05525 * 9 8 7 25 25 H 1.08997 * 109.47280 * 296.50035 * 1 2 3 26 26 H 1.08999 * 109.47509 * 56.50855 * 1 2 3 27 27 H 1.09001 * 109.46858 * 176.50553 * 1 2 3 28 28 H 1.08995 * 109.47112 * 183.94903 * 3 2 1 29 29 H 1.08994 * 109.47544 * 303.95562 * 3 2 1 30 30 H 1.09006 * 109.46631 * 63.95331 * 3 2 1 31 31 H 1.08997 * 109.47330 * 44.15686 * 4 2 1 32 32 H 1.09001 * 109.47664 * 284.15816 * 4 2 1 33 33 H 1.08997 * 110.71961 * 88.06095 * 7 5 4 34 34 H 1.08996 * 110.72130 * 324.77967 * 7 5 4 35 35 H 1.09000 * 109.88353 * 141.61118 * 8 7 5 36 36 H 1.09001 * 109.88656 * 262.78059 * 8 7 5 37 37 H 1.09001 * 109.47202 * 299.99679 * 12 10 9 38 38 H 1.09001 * 109.47112 * 59.99661 * 12 10 9 39 39 H 1.09001 * 109.46841 * 300.00077 * 13 12 10 40 40 H 1.09001 * 109.47136 * 59.99852 * 13 12 10 41 41 H 1.08995 * 109.46556 * 299.99904 * 14 13 12 42 42 H 1.08989 * 109.46935 * 60.00111 * 14 13 12 43 43 H 1.09003 * 109.47344 * 299.99500 * 15 14 13 44 44 H 1.08992 * 109.47729 * 59.99693 * 15 14 13 45 45 H 0.97000 * 120.00270 * 179.97438 * 19 18 16 46 46 H 1.08997 * 110.36726 * 94.70960 * 24 9 8 47 47 H 1.09000 * 110.37170 * 216.92557 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 3.4738 -1.0808 0.9001 6 1 4.0551 -0.1644 0.7971 7 6 3.6552 -1.9966 -0.3391 8 6 4.9771 -2.7324 -0.0345 9 7 5.1802 -2.6805 1.4208 10 6 6.2338 -3.1948 2.0856 11 8 6.2973 -3.0934 3.2925 12 6 7.3328 -3.8956 1.3294 13 6 8.3997 -4.3805 2.3130 14 6 9.5159 -5.0915 1.5452 15 6 10.5824 -5.5769 2.5290 16 6 11.6815 -6.2778 1.7728 17 1 11.6247 -6.3683 0.6981 18 6 12.7595 -6.8034 2.4529 19 7 13.7190 -7.4147 1.7929 20 14 12.8581 -6.6462 4.3117 21 1 12.2038 -7.8202 4.9431 22 1 14.2822 -6.5893 4.7288 23 1 12.1666 -5.4040 4.7407 24 6 4.0403 -1.9735 2.0323 25 1 -0.3634 0.4585 0.9196 26 1 -0.3634 0.5671 -0.8570 27 1 -0.3633 -1.0258 -0.0626 28 1 3.0827 1.3434 -0.0708 29 1 1.5898 1.9164 -0.8523 30 1 1.7042 1.8723 0.9234 31 1 1.4374 -1.6968 1.2383 32 1 1.8910 -0.1792 2.0502 33 1 3.7455 -1.4021 -1.2482 34 1 2.8299 -2.7040 -0.4200 35 1 4.9081 -3.7697 -0.3624 36 1 5.8037 -2.2352 -0.5421 37 1 6.9179 -4.7491 0.7932 38 1 7.7829 -3.2034 0.6179 39 1 8.8147 -3.5268 2.8489 40 1 7.9500 -5.0726 3.0249 41 1 9.1013 -5.9451 1.0091 42 1 9.9656 -4.3991 0.8337 43 1 10.9972 -4.7235 3.0655 44 1 10.1325 -6.2694 3.2402 45 1 14.4776 -7.7841 2.2714 46 1 3.2866 -2.6866 2.3661 47 1 4.3781 -1.3605 2.8679 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588675337.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:31 Heat of formation + Delta-G solvation = -74.735586 kcal Electronic energy + Delta-G solvation = -21838.857828 eV Core-core repulsion = 18633.782935 eV Total energy + Delta-G solvation = -3205.074893 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.17561 -39.29395 -37.57450 -36.64949 -34.61799 -33.25746 -31.74009 -30.41007 -28.46215 -28.28124 -26.82278 -24.48027 -23.29052 -22.90185 -21.71828 -21.05091 -20.03223 -18.85695 -18.01510 -17.54950 -16.89908 -16.38947 -16.15286 -16.05496 -16.02748 -15.49951 -15.08696 -14.77500 -14.54671 -14.14973 -13.90369 -13.82654 -13.61506 -13.47120 -13.42656 -13.22982 -12.85547 -12.81133 -12.56967 -12.38072 -12.34165 -12.09519 -11.91505 -11.81924 -11.75098 -11.51241 -11.46494 -11.35224 -11.26641 -10.83050 -10.75941 -9.67049 -9.29136 -8.29566 -6.32530 1.34573 1.36001 1.49027 1.60101 1.97121 2.35876 2.95329 3.05591 3.51086 3.68319 3.80604 3.92332 4.01532 4.11526 4.26111 4.32668 4.38036 4.42125 4.47297 4.53998 4.57871 4.62748 4.68400 4.71924 4.75175 4.79712 4.81798 4.84875 4.94836 5.02587 5.06702 5.07997 5.13338 5.16544 5.22644 5.26152 5.33430 5.43639 5.59282 5.65040 5.68346 6.06887 6.10180 6.29586 6.47999 6.75130 7.13849 7.32133 8.86881 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.050348 B = 0.002281 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.992568 B =12272.921425 C =12567.199234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.551 5.551 3 C 0.021 3.979 4 C 0.069 3.931 5 C -0.086 4.086 6 H 0.082 0.918 7 C -0.100 4.100 8 C 0.089 3.911 9 N -0.622 5.622 10 C 0.523 3.477 11 O -0.590 6.590 12 C -0.125 4.125 13 C -0.097 4.097 14 C -0.093 4.093 15 C -0.017 4.017 16 C -0.530 4.530 17 H 0.038 0.962 18 C 0.003 3.997 19 N -0.950 5.950 20 Si 0.947 3.053 21 H -0.267 1.267 22 H -0.281 1.281 23 H -0.253 1.253 24 C 0.106 3.894 25 H 0.024 0.976 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.023 0.977 31 H 0.083 0.917 32 H 0.036 0.964 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.050 0.950 40 H 0.051 0.949 41 H 0.058 0.942 42 H 0.057 0.943 43 H 0.013 0.987 44 H 0.013 0.987 45 H 0.266 0.734 46 H 0.070 0.930 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.506 17.479 -6.081 35.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.275 5.275 3 C -0.128 4.128 4 C -0.060 4.060 5 C -0.105 4.105 6 H 0.100 0.900 7 C -0.138 4.138 8 C -0.033 4.033 9 N -0.355 5.355 10 C 0.314 3.686 11 O -0.471 6.471 12 C -0.164 4.164 13 C -0.135 4.135 14 C -0.130 4.130 15 C -0.055 4.055 16 C -0.568 4.568 17 H 0.056 0.944 18 C -0.193 4.193 19 N -0.590 5.590 20 Si 0.771 3.229 21 H -0.192 1.192 22 H -0.207 1.207 23 H -0.177 1.177 24 C -0.017 4.017 25 H 0.043 0.957 26 H 0.094 0.906 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.042 0.958 31 H 0.101 0.899 32 H 0.054 0.946 33 H 0.115 0.885 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.131 0.869 38 H 0.131 0.869 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.032 0.968 44 H 0.031 0.969 45 H 0.075 0.925 46 H 0.088 0.912 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -30.106 17.189 -5.841 35.156 hybrid contribution 0.383 0.162 1.590 1.643 sum -29.723 17.351 -4.251 34.678 Atomic orbital electron populations 1.22426 0.86407 1.02794 1.00816 1.61942 1.08558 1.14230 1.42737 1.22467 1.01103 0.88464 1.00730 1.21989 0.93883 0.98637 0.91462 1.22237 0.95951 0.97998 0.94354 0.89979 1.22492 0.95325 0.97802 0.98192 1.22414 0.99761 1.02357 0.78770 1.48625 1.20995 1.56344 1.09574 1.20893 0.82506 0.78003 0.87216 1.90676 1.79224 1.60634 1.16520 1.21643 0.93767 1.01930 0.99063 1.21289 0.95010 0.99701 0.97507 1.21329 0.94681 0.99228 0.97793 1.19578 0.94373 0.95536 0.95987 1.21534 1.05165 1.35530 0.94556 0.94401 1.25993 0.95144 0.94407 1.03785 1.70059 1.11228 1.39689 1.38074 0.85698 0.77500 0.79911 0.79794 1.19202 1.20657 1.17720 1.22253 0.87931 0.94978 0.96558 0.95750 0.90632 0.90816 0.91223 0.90638 0.95830 0.89863 0.94587 0.88544 0.89890 0.89974 0.90163 0.86867 0.86944 0.93089 0.92976 0.92370 0.92408 0.96816 0.96898 0.92512 0.91172 0.92368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.54 127.69 1.22 1.40 16 2 N -0.55 -5.43 4.73 -948.85 -4.49 -9.92 16 3 C 0.02 0.18 9.39 127.69 1.20 1.38 16 4 C 0.07 0.70 4.43 86.31 0.38 1.08 16 5 C -0.09 -1.02 2.98 -9.40 -0.03 -1.05 16 6 H 0.08 1.04 6.86 -2.38 -0.02 1.03 16 7 C -0.10 -0.99 6.19 31.78 0.20 -0.80 16 8 C 0.09 1.16 6.49 86.73 0.56 1.73 16 9 N -0.62 -12.94 3.33 -811.79 -2.70 -15.64 16 10 C 0.52 14.82 7.85 87.66 0.69 15.51 16 11 O -0.59 -22.18 16.24 -3.03 -0.05 -22.23 16 12 C -0.12 -3.15 4.89 29.85 0.15 -3.01 16 13 C -0.10 -3.30 4.50 30.60 0.14 -3.16 16 14 C -0.09 -3.65 5.15 30.59 0.16 -3.50 16 15 C -0.02 -0.86 4.04 29.85 0.12 -0.74 16 16 C -0.53 -31.58 9.66 25.60 0.25 -31.33 16 17 H 0.04 2.43 7.99 -2.91 -0.02 2.41 16 18 C 0.00 0.20 5.47 84.65 0.46 0.67 16 19 N -0.95 -60.86 13.96 21.45 0.30 -60.56 16 20 Si 0.95 46.49 27.47 68.60 1.88 48.38 16 21 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 22 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 23 H -0.25 -11.88 6.54 99.48 0.65 -11.23 16 24 C 0.11 1.90 6.38 86.86 0.55 2.45 16 25 H 0.02 0.19 8.14 -2.39 -0.02 0.17 16 26 H 0.07 0.48 8.13 -2.39 -0.02 0.46 16 27 H 0.07 0.50 8.08 -2.39 -0.02 0.48 16 28 H 0.07 0.63 6.74 -2.39 -0.02 0.62 16 29 H 0.07 0.56 8.12 -2.39 -0.02 0.54 16 30 H 0.02 0.22 8.11 -2.38 -0.02 0.20 16 31 H 0.08 0.77 7.95 -2.39 -0.02 0.76 16 32 H 0.04 0.40 8.03 -2.39 -0.02 0.38 16 33 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.08 0.76 8.04 -2.39 -0.02 0.74 16 35 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 39 H 0.05 1.85 8.10 -2.39 -0.02 1.83 16 40 H 0.05 1.88 8.10 -2.39 -0.02 1.87 16 41 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 43 H 0.01 0.67 7.20 -2.39 -0.02 0.66 16 44 H 0.01 0.62 7.57 -2.39 -0.02 0.61 16 45 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 46 H 0.07 1.20 8.03 -2.39 -0.02 1.18 16 47 H 0.06 1.26 8.03 -2.39 -0.02 1.24 16 Total: -1.00 -74.93 371.96 1.82 -73.11 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: 0.84 Total: 6.24 kcal Atomic # 6 Polarization: -25.41 SS G_CDS: 6.05 Total: -19.37 kcal Atomic # 7 Polarization: -79.23 SS G_CDS: -6.89 Total: -86.13 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: -0.05 Total: -22.23 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 1.88 Total: 48.38 kcal Total: -74.93 1.82 -73.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588675337.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.627 kcal (2) G-P(sol) polarization free energy of solvation -74.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds