Wall clock time and date at job start Tue Mar 31 2020 05:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46505 * 119.99899 * 2 1 4 4 C 1.52997 * 109.47212 * 270.00188 * 3 2 1 5 5 N 1.46894 * 109.47515 * 179.97438 * 4 3 2 6 6 C 1.46902 * 110.99947 * 66.04655 * 5 4 3 7 7 C 1.46898 * 111.00516 * 189.99788 * 5 4 3 8 8 C 1.52999 * 117.50237 * 243.74955 * 7 5 4 9 9 C 1.52998 * 117.50188 * 175.08547 * 7 5 4 10 10 C 1.34773 * 120.00646 * 180.02562 * 2 1 3 11 11 O 1.21282 * 120.00692 * 179.97438 * 10 2 1 12 12 C 1.50705 * 119.99759 * 0.02562 * 10 2 1 13 13 C 1.52997 * 109.47283 * 180.02562 * 12 10 2 14 14 C 1.53005 * 109.46963 * 179.97438 * 13 12 10 15 15 C 1.53003 * 109.46692 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.46697 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00077 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00079 * 180.02562 * 16 15 14 19 19 N 1.31522 * 119.99892 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00309 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46838 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47011 * 119.99835 * 20 18 16 23 23 H 1.48497 * 109.47419 * 240.00396 * 20 18 16 24 24 H 1.08994 * 109.47405 * 90.00269 * 1 2 3 25 25 H 1.09006 * 109.46911 * 209.99921 * 1 2 3 26 26 H 1.08996 * 109.47170 * 329.99434 * 1 2 3 27 27 H 1.09002 * 109.47068 * 30.00248 * 3 2 1 28 28 H 1.09001 * 109.47372 * 150.00336 * 3 2 1 29 29 H 1.09002 * 109.47153 * 300.00008 * 4 3 2 30 30 H 1.08998 * 109.47533 * 59.99637 * 4 3 2 31 31 H 1.08997 * 109.47044 * 59.99771 * 6 5 4 32 32 H 1.09001 * 109.47499 * 180.02562 * 6 5 4 33 33 H 1.09003 * 109.47124 * 299.99969 * 6 5 4 34 34 H 1.09004 * 115.54525 * 29.42102 * 7 5 4 35 35 H 1.08995 * 117.49846 * 0.02562 * 8 7 5 36 36 H 1.08999 * 117.49509 * 145.02121 * 8 7 5 37 37 H 1.09001 * 117.50084 * 214.98372 * 9 7 5 38 38 H 1.09000 * 117.49562 * 359.97438 * 9 7 5 39 39 H 1.09006 * 109.46606 * 299.99889 * 12 10 2 40 40 H 1.08999 * 109.47462 * 59.99201 * 12 10 2 41 41 H 1.09000 * 109.46715 * 299.99592 * 13 12 10 42 42 H 1.09002 * 109.47244 * 59.99807 * 13 12 10 43 43 H 1.08992 * 109.47118 * 299.99757 * 14 13 12 44 44 H 1.09002 * 109.46939 * 60.00060 * 14 13 12 45 45 H 1.08992 * 109.47480 * 299.99951 * 15 14 13 46 46 H 1.08993 * 109.47014 * 60.00663 * 15 14 13 47 47 H 0.96989 * 119.99968 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7105 -1.4425 5 7 3.1863 2.9830 -1.4425 6 6 4.5350 2.8128 -0.8856 7 6 3.2432 3.5579 -2.7931 8 6 4.6213 3.7023 -3.4420 9 6 3.8749 4.9431 -2.9453 10 6 2.1389 -1.1671 -0.0005 11 8 3.3517 -1.1671 -0.0010 12 6 1.3855 -2.4723 -0.0017 13 6 2.3798 -3.6351 -0.0014 14 6 1.6148 -4.9602 -0.0020 15 6 2.6091 -6.1231 -0.0024 16 6 1.8556 -7.4282 -0.0035 17 1 0.7756 -7.4282 -0.0035 18 6 2.5450 -8.6222 -0.0035 19 7 3.8602 -8.6222 -0.0020 20 14 1.6111 -10.2400 -0.0043 21 1 0.1511 -9.9687 -0.0054 22 1 1.9704 -11.0184 -1.2168 23 1 1.9693 -11.0190 1.2082 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8899 0.5139 27 1 1.6083 2.0284 0.5139 28 1 3.1499 1.1385 0.5138 29 1 3.0415 0.9509 -1.9563 30 1 1.5000 1.8408 -1.9563 31 1 5.0877 2.0905 -1.4863 32 1 5.0563 3.7701 -0.8970 33 1 4.4616 2.4518 0.1402 34 1 2.4036 3.3134 -3.4439 35 1 5.4856 3.3703 -2.8670 36 1 4.6881 3.5532 -4.5197 37 1 3.4512 5.6097 -3.6964 38 1 4.2479 5.4279 -2.0431 39 1 0.7585 -2.5306 0.8881 40 1 0.7591 -2.5295 -0.8919 41 1 3.0070 -3.5770 -0.8910 42 1 3.0058 -3.5778 0.8890 43 1 0.9878 -5.0181 0.8877 44 1 0.9885 -5.0178 -0.8923 45 1 3.2358 -6.0650 -0.8922 46 1 3.2356 -6.0657 0.8877 47 1 4.3452 -9.4622 -0.0024 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588683572.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:59 Heat of formation + Delta-G solvation = -20.002550 kcal Electronic energy + Delta-G solvation = -21845.076019 eV Core-core repulsion = 18642.374529 eV Total energy + Delta-G solvation = -3202.701491 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.07425 -39.06265 -36.08688 -34.88037 -34.22332 -32.60591 -30.27512 -28.96960 -27.24800 -26.51633 -25.28848 -23.07233 -22.66866 -21.65821 -20.36427 -19.99643 -19.02509 -17.30928 -16.82048 -16.20447 -16.10923 -15.85117 -15.54814 -14.92109 -14.46728 -14.34763 -13.99499 -13.37948 -13.27323 -13.18050 -12.77595 -12.70209 -12.55015 -12.28558 -12.12457 -12.01886 -11.73334 -11.62698 -11.57206 -11.10878 -11.04503 -10.98264 -10.71770 -10.52063 -10.47294 -10.39043 -9.76872 -9.59992 -9.20924 -8.95932 -8.85039 -8.50390 -8.29944 -5.94510 -3.96909 2.66585 2.80453 3.33535 3.38286 3.40656 3.44624 3.75522 4.43608 4.48914 4.53365 4.59398 4.66407 4.78819 4.89536 4.93789 5.00849 5.19597 5.20007 5.30711 5.32720 5.33369 5.40348 5.41822 5.44432 5.47059 5.52553 5.61379 5.67298 5.76730 5.79679 5.88273 6.15385 6.26914 6.35032 6.56224 6.65955 6.72059 6.85544 7.02838 7.20411 7.28979 7.75484 7.91351 8.07157 8.21486 8.48950 9.11097 9.66681 11.16876 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.030733 B = 0.002350 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.857718 B =11913.814956 C =12380.734055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.625 5.625 3 C 0.118 3.882 4 C 0.042 3.958 5 N -0.508 5.508 6 C 0.015 3.985 7 C 0.020 3.980 8 C -0.219 4.219 9 C -0.170 4.170 10 C 0.512 3.488 11 O -0.533 6.533 12 C -0.137 4.137 13 C -0.103 4.103 14 C -0.110 4.110 15 C 0.019 3.981 16 C -0.519 4.519 17 H 0.055 0.945 18 C 0.054 3.946 19 N -0.895 5.895 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.055 0.945 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.043 0.957 30 H 0.075 0.925 31 H 0.036 0.964 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.117 0.883 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.046 0.954 44 H 0.046 0.954 45 H 0.015 0.985 46 H 0.016 0.984 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.458 27.546 -3.243 28.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.360 5.360 3 C -0.005 4.005 4 C -0.087 4.087 5 N -0.230 5.230 6 C -0.133 4.133 7 C -0.089 4.089 8 C -0.258 4.258 9 C -0.208 4.208 10 C 0.302 3.698 11 O -0.409 6.409 12 C -0.177 4.177 13 C -0.142 4.142 14 C -0.147 4.147 15 C -0.018 4.018 16 C -0.557 4.557 17 H 0.073 0.927 18 C -0.147 4.147 19 N -0.535 5.535 20 Si 0.719 3.281 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.211 1.211 24 H 0.074 0.926 25 H 0.095 0.905 26 H 0.089 0.911 27 H 0.101 0.899 28 H 0.102 0.898 29 H 0.061 0.939 30 H 0.093 0.907 31 H 0.054 0.946 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.134 0.866 35 H 0.119 0.881 36 H 0.112 0.888 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.034 0.966 46 H 0.034 0.966 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.929 27.731 -2.908 28.315 hybrid contribution -0.083 -1.408 -0.613 1.538 sum -5.012 26.323 -3.522 27.026 Atomic orbital electron populations 1.21824 0.79275 1.03433 1.01929 1.47933 1.07110 1.05914 1.75042 1.21378 0.98362 0.84679 0.96073 1.22495 0.98478 0.89710 0.98011 1.61831 1.16675 1.25353 1.19110 1.22574 0.89152 1.01123 1.00403 1.22656 0.96230 0.99559 0.90458 1.23580 0.97260 1.03638 1.01362 1.23062 1.03822 0.90903 1.02991 1.21158 0.88259 0.85512 0.74903 1.90694 1.14200 1.87335 1.48658 1.21827 1.00076 0.91987 1.03790 1.21461 0.97039 0.92763 1.02889 1.21647 0.99062 0.93997 1.00042 1.19102 0.94078 0.91304 0.97307 1.21323 0.93015 0.91183 1.50191 0.92696 1.25056 0.94853 0.99260 0.95510 1.69987 1.06041 1.26382 1.51071 0.86552 0.80073 0.83923 0.77534 1.19779 1.21067 1.21059 0.92646 0.90479 0.91084 0.89933 0.89819 0.93876 0.90663 0.94564 0.91290 0.90756 0.86552 0.88097 0.88798 0.88508 0.88545 0.89129 0.89200 0.91900 0.91837 0.93477 0.93504 0.96613 0.96586 0.93112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.55 10.28 59.84 0.62 1.17 16 2 N -0.62 -6.71 2.87 -181.57 -0.52 -7.23 16 3 C 0.12 1.18 5.37 -4.04 -0.02 1.16 16 4 C 0.04 0.41 5.26 -3.83 -0.02 0.39 16 5 N -0.51 -4.67 4.97 -234.89 -1.17 -5.84 16 6 C 0.02 0.14 7.95 60.07 0.48 0.62 16 7 C 0.02 0.17 6.10 -67.71 -0.41 -0.24 16 8 C -0.22 -1.69 9.51 -26.69 -0.25 -1.95 16 9 C -0.17 -1.19 9.99 -26.69 -0.27 -1.46 16 10 C 0.51 7.36 7.67 -10.98 -0.08 7.27 16 11 O -0.53 -9.80 15.56 5.56 0.09 -9.71 16 12 C -0.14 -1.86 4.25 -27.88 -0.12 -1.98 16 13 C -0.10 -1.88 4.50 -26.73 -0.12 -2.00 16 14 C -0.11 -2.28 5.15 -26.73 -0.14 -2.42 16 15 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 16 C -0.52 -15.05 9.11 -34.44 -0.31 -15.36 16 17 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 18 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 19 N -0.90 -27.70 13.29 55.43 0.74 -26.96 16 20 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 21 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 24 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.08 0.50 6.44 -51.93 -0.33 0.17 16 26 H 0.07 0.38 7.89 -51.93 -0.41 -0.03 16 27 H 0.08 0.68 7.89 -51.93 -0.41 0.27 16 28 H 0.08 0.99 5.83 -51.93 -0.30 0.69 16 29 H 0.04 0.53 8.12 -51.93 -0.42 0.11 16 30 H 0.07 0.66 7.96 -51.93 -0.41 0.25 16 31 H 0.04 0.36 7.23 -51.93 -0.38 -0.01 16 32 H 0.07 0.54 6.63 -51.93 -0.34 0.19 16 33 H 0.07 0.68 6.47 -51.93 -0.34 0.35 16 34 H 0.12 0.88 7.93 -51.93 -0.41 0.47 16 35 H 0.10 0.81 5.90 -51.93 -0.31 0.51 16 36 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.10 0.68 7.56 -51.93 -0.39 0.29 16 39 H 0.09 1.06 7.40 -51.93 -0.38 0.68 16 40 H 0.09 1.07 8.11 -51.93 -0.42 0.65 16 41 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 42 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 43 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 44 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 373.76 15.07 5.63 5.63 Total: -1.00 -33.66 373.76 -9.75 -43.42 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -8.61 Total: -3.36 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: -0.89 Total: -12.94 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: -0.95 Total: -40.03 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.09 Total: -9.71 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.66 -9.75 -43.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588683572.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.413 kcal (2) G-P(sol) polarization free energy of solvation -33.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds