Wall clock time and date at job start Tue Mar 31 2020 05:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46903 * 111.00008 * 2 1 4 4 C 1.46900 * 111.00358 * 123.95465 * 2 1 3 5 5 C 1.52997 * 109.47573 * 170.00167 * 4 2 1 6 6 N 1.46502 * 109.47426 * 180.02562 * 5 4 2 7 7 C 1.34774 * 119.99726 * 269.99728 * 6 5 4 8 8 O 1.21283 * 120.00223 * 185.95104 * 7 6 5 9 9 C 1.50709 * 120.00271 * 5.95317 * 7 6 5 10 10 C 1.52992 * 109.47181 * 180.87569 * 9 7 6 11 11 C 1.53006 * 109.47124 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46991 * 180.02562 * 11 10 9 13 13 C 1.50699 * 109.46539 * 179.97438 * 12 11 10 14 14 H 1.07995 * 120.00734 * 0.02562 * 13 12 11 15 15 C 1.37886 * 119.99875 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99839 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00155 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.46874 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46973 * 120.00330 * 17 15 13 20 20 H 1.48501 * 109.47158 * 240.00280 * 17 15 13 21 21 C 1.46492 * 120.00225 * 89.99453 * 6 5 4 22 22 C 1.53000 * 117.50246 * 196.36608 * 21 6 5 23 23 C 1.53004 * 117.49948 * 127.70929 * 21 6 5 24 24 H 1.08997 * 109.47074 * 296.04465 * 1 2 3 25 25 H 1.08994 * 109.47004 * 56.05013 * 1 2 3 26 26 H 1.09000 * 109.47170 * 176.04797 * 1 2 3 27 27 H 1.09005 * 109.46807 * 183.95369 * 3 2 1 28 28 H 1.09000 * 109.47134 * 303.95036 * 3 2 1 29 29 H 1.08994 * 109.47087 * 63.95474 * 3 2 1 30 30 H 1.08996 * 109.47218 * 49.99707 * 4 2 1 31 31 H 1.09007 * 109.46994 * 289.99871 * 4 2 1 32 32 H 1.08996 * 109.47224 * 59.99543 * 5 4 2 33 33 H 1.09004 * 109.47178 * 299.99716 * 5 4 2 34 34 H 1.09002 * 109.47084 * 300.88281 * 9 7 6 35 35 H 1.09006 * 109.46706 * 60.88009 * 9 7 6 36 36 H 1.09002 * 109.47693 * 300.00339 * 10 9 7 37 37 H 1.09000 * 109.47271 * 60.00292 * 10 9 7 38 38 H 1.09000 * 109.47007 * 300.00080 * 11 10 9 39 39 H 1.09000 * 109.46908 * 59.99948 * 11 10 9 40 40 H 1.08991 * 109.47129 * 300.00033 * 12 11 10 41 41 H 1.09006 * 109.47137 * 60.00423 * 12 11 10 42 42 H 0.96993 * 120.00354 * 179.97438 * 16 15 13 43 43 H 1.09002 * 115.55093 * 342.04333 * 21 6 5 44 44 H 1.09003 * 117.49252 * 0.02562 * 22 21 6 45 45 H 1.08997 * 117.49698 * 145.01993 * 22 21 6 46 46 H 1.08994 * 117.50090 * 214.98481 * 23 21 6 47 47 H 1.09006 * 117.49686 * 359.97438 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.5044 -0.9553 0.9703 6 7 4.0294 -1.7197 2.1045 7 6 4.4601 -1.0775 3.2084 8 8 4.9935 -1.6995 4.1025 9 6 4.2789 0.4135 3.3317 10 6 4.8695 0.8909 4.6598 11 6 4.6850 2.4046 4.7854 12 6 5.2763 2.8821 6.1133 13 6 5.0950 4.3730 6.2365 14 1 4.6065 4.9248 5.4470 15 6 5.5518 5.0327 7.3578 16 7 6.1462 4.3608 8.3195 17 14 5.3265 6.8807 7.5110 18 1 4.6331 7.3965 6.3034 19 1 4.5119 7.1819 8.7156 20 1 6.6549 7.5327 7.6361 21 6 4.0861 -3.1821 2.0388 22 6 4.2716 -3.9417 3.3539 23 6 5.4256 -3.8519 2.3523 24 1 -0.3633 0.4512 0.9233 25 1 -0.3633 0.5739 -0.8524 26 1 -0.3633 -1.0252 -0.0708 27 1 3.0828 1.3432 -0.0709 28 1 1.5898 1.9163 -0.8525 29 1 1.7044 1.8723 0.9233 30 1 1.5090 -1.7406 1.1756 31 1 1.7976 -0.2247 2.0628 32 1 3.9909 0.0193 0.9323 33 1 3.7024 -1.4966 0.0451 34 1 4.7894 0.9110 2.5072 35 1 3.2162 0.6542 3.2993 36 1 4.3590 0.3934 5.4844 37 1 5.9321 0.6502 4.6923 38 1 5.1953 2.9024 3.9609 39 1 3.6223 2.6449 4.7530 40 1 4.7663 2.3842 6.9379 41 1 6.3390 2.6418 6.1451 42 1 6.4679 4.8248 9.1082 43 1 3.4594 -3.6431 1.2754 44 1 4.3510 -3.3533 4.2680 45 1 3.7671 -4.9026 3.4555 46 1 5.6799 -4.7537 1.7954 47 1 6.2647 -3.2044 2.6070 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588686038.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:01 Heat of formation + Delta-G solvation = -11.927288 kcal Electronic energy + Delta-G solvation = -22596.268475 eV Core-core repulsion = 19393.917154 eV Total energy + Delta-G solvation = -3202.351321 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.53480 -37.93448 -36.67125 -34.95357 -34.38956 -32.52513 -29.73780 -29.26731 -27.88136 -25.87666 -24.51542 -23.38809 -22.41808 -21.64440 -21.40253 -19.99020 -18.90509 -17.29154 -16.47158 -16.09417 -15.97087 -15.48453 -15.32817 -14.96227 -14.63705 -14.37748 -14.08376 -13.71339 -13.57542 -12.94836 -12.80263 -12.58936 -12.56720 -12.22068 -12.06176 -11.97040 -11.65742 -11.63118 -11.36522 -11.29147 -11.10420 -10.94947 -10.51851 -10.47664 -10.45243 -10.40044 -9.62440 -9.47382 -9.18236 -8.97123 -8.76040 -8.50261 -8.31187 -5.95721 -3.98224 2.57825 2.69327 3.32592 3.39802 3.43590 3.69116 3.83825 4.43885 4.48958 4.53897 4.74447 4.78726 4.86494 5.00123 5.01373 5.07610 5.12897 5.19679 5.27705 5.30965 5.37585 5.39890 5.43009 5.50537 5.54743 5.58663 5.66989 5.69403 5.86841 5.97405 6.11892 6.26860 6.28397 6.53338 6.58274 6.61923 6.69513 6.82506 6.99942 7.18226 7.29190 7.73826 7.89484 8.05629 8.20880 8.47457 9.09660 9.65481 11.15656 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014736 B = 0.003562 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.601276 B = 7859.796110 C = 9487.086860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.545 5.545 3 C 0.015 3.985 4 C 0.033 3.967 5 C 0.117 3.883 6 N -0.592 5.592 7 C 0.514 3.486 8 O -0.524 6.524 9 C -0.138 4.138 10 C -0.103 4.103 11 C -0.109 4.109 12 C 0.020 3.980 13 C -0.520 4.520 14 H 0.054 0.946 15 C 0.055 3.945 16 N -0.895 5.895 17 Si 0.890 3.110 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.069 3.931 22 C -0.192 4.192 23 C -0.186 4.186 24 H 0.028 0.972 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.032 0.968 30 H 0.077 0.923 31 H 0.042 0.958 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.046 0.954 39 H 0.045 0.955 40 H 0.016 0.984 41 H 0.016 0.984 42 H 0.259 0.741 43 H 0.125 0.875 44 H 0.137 0.863 45 H 0.087 0.913 46 H 0.093 0.907 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.266 -13.952 -19.252 25.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.270 5.270 3 C -0.133 4.133 4 C -0.096 4.096 5 C -0.007 4.007 6 N -0.324 5.324 7 C 0.305 3.695 8 O -0.400 6.400 9 C -0.178 4.178 10 C -0.141 4.141 11 C -0.147 4.147 12 C -0.017 4.017 13 C -0.558 4.558 14 H 0.073 0.927 15 C -0.146 4.146 16 N -0.534 5.534 17 Si 0.718 3.282 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.036 4.036 22 C -0.230 4.230 23 C -0.225 4.225 24 H 0.046 0.954 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.051 0.949 30 H 0.096 0.904 31 H 0.060 0.940 32 H 0.103 0.897 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.105 0.895 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.069 0.931 43 H 0.143 0.857 44 H 0.155 0.845 45 H 0.105 0.895 46 H 0.111 0.889 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -8.744 -14.468 -19.037 25.459 hybrid contribution -0.475 1.416 0.764 1.677 sum -9.219 -13.052 -18.273 24.274 Atomic orbital electron populations 1.22381 0.86948 1.02264 1.00805 1.61957 1.08193 1.14284 1.42546 1.22522 1.01154 0.88501 1.01134 1.22622 0.95937 0.98919 0.92116 1.21548 0.92965 0.97201 0.88983 1.47410 1.63258 1.05078 1.16676 1.21133 0.77000 0.90735 0.80682 1.90550 1.41737 1.67779 1.39919 1.21887 1.03159 0.90742 1.02003 1.21460 1.01147 0.97557 0.93923 1.21644 1.00095 0.92018 1.00948 1.19095 0.96126 0.95574 0.90922 1.21315 1.37683 0.93242 1.03570 0.92736 1.25044 0.95364 0.98211 0.95943 1.69981 1.39677 1.35520 1.08255 0.86564 0.77793 0.85850 0.77950 1.19786 1.21050 1.21023 1.21647 1.00973 0.79650 1.01293 1.23831 1.01309 1.01044 0.96786 1.23238 0.93203 1.02362 1.03699 0.95365 0.91170 0.91398 0.90909 0.91162 0.94905 0.90414 0.93961 0.89747 0.89338 0.89329 0.89453 0.91795 0.91755 0.93509 0.93619 0.96607 0.96572 0.93090 0.85719 0.84518 0.89479 0.88891 0.88467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.57 60.06 0.57 0.75 16 2 N -0.55 -4.41 5.02 -251.27 -1.26 -5.67 16 3 C 0.01 0.12 9.32 60.07 0.56 0.68 16 4 C 0.03 0.28 5.28 -3.83 -0.02 0.26 16 5 C 0.12 0.99 5.13 -4.04 -0.02 0.97 16 6 N -0.59 -6.55 2.84 -166.11 -0.47 -7.02 16 7 C 0.51 7.30 7.46 -10.98 -0.08 7.22 16 8 O -0.52 -9.12 11.73 5.55 0.07 -9.05 16 9 C -0.14 -1.89 4.42 -27.88 -0.12 -2.01 16 10 C -0.10 -1.85 4.50 -26.73 -0.12 -1.97 16 11 C -0.11 -2.26 5.15 -26.73 -0.14 -2.40 16 12 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 13 C -0.52 -15.01 9.11 -34.44 -0.31 -15.33 16 14 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.89 -27.57 13.29 55.43 0.74 -26.83 16 17 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 18 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 21 C 0.07 0.70 6.60 -67.93 -0.45 0.26 16 22 C -0.19 -2.24 9.63 -26.70 -0.26 -2.50 16 23 C -0.19 -2.04 9.88 -26.69 -0.26 -2.31 16 24 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 25 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 26 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 27 H 0.07 0.52 6.47 -51.93 -0.34 0.19 16 28 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 29 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.08 0.64 8.06 -51.93 -0.42 0.22 16 31 H 0.04 0.41 6.90 -51.92 -0.36 0.05 16 32 H 0.08 0.70 4.88 -51.93 -0.25 0.45 16 33 H 0.09 0.67 8.07 -51.93 -0.42 0.25 16 34 H 0.09 1.06 7.18 -51.93 -0.37 0.69 16 35 H 0.09 1.08 6.92 -51.93 -0.36 0.72 16 36 H 0.06 1.23 8.09 -51.93 -0.42 0.81 16 37 H 0.06 1.23 8.11 -51.93 -0.42 0.81 16 38 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 43 H 0.13 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.14 2.05 5.22 -52.11 -0.27 1.77 16 45 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 47 H 0.10 1.29 7.60 -51.93 -0.39 0.90 16 LS Contribution 371.43 15.07 5.60 5.60 Total: -1.00 -32.61 371.43 -9.88 -42.49 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -8.64 Total: -1.93 kcal Atomic # 6 Polarization: -13.59 SS G_CDS: -0.89 Total: -14.48 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: -1.00 Total: -39.53 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.07 Total: -9.05 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.61 -9.88 -42.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588686038.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.566 kcal (2) G-P(sol) polarization free energy of solvation -32.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds