Wall clock time and date at job start Tue Mar 31 2020 05:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46903 * 111.00008 * 2 1 4 4 C 1.46900 * 111.00358 * 123.95465 * 2 1 3 5 5 C 1.52997 * 109.47573 * 170.00167 * 4 2 1 6 6 N 1.46502 * 109.47426 * 180.02562 * 5 4 2 7 7 C 1.34774 * 119.99726 * 269.99728 * 6 5 4 8 8 O 1.21283 * 120.00223 * 185.95104 * 7 6 5 9 9 C 1.50709 * 120.00271 * 5.95317 * 7 6 5 10 10 C 1.52992 * 109.47181 * 180.87569 * 9 7 6 11 11 C 1.53006 * 109.47124 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.46991 * 180.02562 * 11 10 9 13 13 C 1.50699 * 109.46539 * 179.97438 * 12 11 10 14 14 H 1.07995 * 120.00734 * 0.02562 * 13 12 11 15 15 C 1.37886 * 119.99875 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99839 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00155 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.46874 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46973 * 120.00330 * 17 15 13 20 20 H 1.48501 * 109.47158 * 240.00280 * 17 15 13 21 21 C 1.46492 * 120.00225 * 89.99453 * 6 5 4 22 22 C 1.53000 * 117.50246 * 196.36608 * 21 6 5 23 23 C 1.53004 * 117.49948 * 127.70929 * 21 6 5 24 24 H 1.08997 * 109.47074 * 296.04465 * 1 2 3 25 25 H 1.08994 * 109.47004 * 56.05013 * 1 2 3 26 26 H 1.09000 * 109.47170 * 176.04797 * 1 2 3 27 27 H 1.09005 * 109.46807 * 183.95369 * 3 2 1 28 28 H 1.09000 * 109.47134 * 303.95036 * 3 2 1 29 29 H 1.08994 * 109.47087 * 63.95474 * 3 2 1 30 30 H 1.08996 * 109.47218 * 49.99707 * 4 2 1 31 31 H 1.09007 * 109.46994 * 289.99871 * 4 2 1 32 32 H 1.08996 * 109.47224 * 59.99543 * 5 4 2 33 33 H 1.09004 * 109.47178 * 299.99716 * 5 4 2 34 34 H 1.09002 * 109.47084 * 300.88281 * 9 7 6 35 35 H 1.09006 * 109.46706 * 60.88009 * 9 7 6 36 36 H 1.09002 * 109.47693 * 300.00339 * 10 9 7 37 37 H 1.09000 * 109.47271 * 60.00292 * 10 9 7 38 38 H 1.09000 * 109.47007 * 300.00080 * 11 10 9 39 39 H 1.09000 * 109.46908 * 59.99948 * 11 10 9 40 40 H 1.08991 * 109.47129 * 300.00033 * 12 11 10 41 41 H 1.09006 * 109.47137 * 60.00423 * 12 11 10 42 42 H 0.96993 * 120.00354 * 179.97438 * 16 15 13 43 43 H 1.09002 * 115.55093 * 342.04333 * 21 6 5 44 44 H 1.09003 * 117.49252 * 0.02562 * 22 21 6 45 45 H 1.08997 * 117.49698 * 145.01993 * 22 21 6 46 46 H 1.08994 * 117.50090 * 214.98481 * 23 21 6 47 47 H 1.09006 * 117.49686 * 359.97438 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.5044 -0.9553 0.9703 6 7 4.0294 -1.7197 2.1045 7 6 4.4601 -1.0775 3.2084 8 8 4.9935 -1.6995 4.1025 9 6 4.2789 0.4135 3.3317 10 6 4.8695 0.8909 4.6598 11 6 4.6850 2.4046 4.7854 12 6 5.2763 2.8821 6.1133 13 6 5.0950 4.3730 6.2365 14 1 4.6065 4.9248 5.4470 15 6 5.5518 5.0327 7.3578 16 7 6.1462 4.3608 8.3195 17 14 5.3265 6.8807 7.5110 18 1 4.6331 7.3965 6.3034 19 1 4.5119 7.1819 8.7156 20 1 6.6549 7.5327 7.6361 21 6 4.0861 -3.1821 2.0388 22 6 4.2716 -3.9417 3.3539 23 6 5.4256 -3.8519 2.3523 24 1 -0.3633 0.4512 0.9233 25 1 -0.3633 0.5739 -0.8524 26 1 -0.3633 -1.0252 -0.0708 27 1 3.0828 1.3432 -0.0709 28 1 1.5898 1.9163 -0.8525 29 1 1.7044 1.8723 0.9233 30 1 1.5090 -1.7406 1.1756 31 1 1.7976 -0.2247 2.0628 32 1 3.9909 0.0193 0.9323 33 1 3.7024 -1.4966 0.0451 34 1 4.7894 0.9110 2.5072 35 1 3.2162 0.6542 3.2993 36 1 4.3590 0.3934 5.4844 37 1 5.9321 0.6502 4.6923 38 1 5.1953 2.9024 3.9609 39 1 3.6223 2.6449 4.7530 40 1 4.7663 2.3842 6.9379 41 1 6.3390 2.6418 6.1451 42 1 6.4679 4.8248 9.1082 43 1 3.4594 -3.6431 1.2754 44 1 4.3510 -3.3533 4.2680 45 1 3.7671 -4.9026 3.4555 46 1 5.6799 -4.7537 1.7954 47 1 6.2647 -3.2044 2.6070 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588686038.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:01 Heat of formation + Delta-G solvation = -31.977481 kcal Electronic energy + Delta-G solvation = -22597.137916 eV Core-core repulsion = 19393.917154 eV Total energy + Delta-G solvation = -3203.220763 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.54624 -38.61736 -37.70770 -36.52900 -35.43588 -34.47650 -31.42650 -30.05861 -28.44312 -27.64211 -25.27773 -24.81106 -23.30837 -23.00940 -22.11406 -21.67687 -19.94282 -18.44499 -18.17501 -17.27465 -17.01631 -16.52755 -16.18207 -16.16196 -15.79436 -15.54715 -15.30116 -14.73143 -14.52456 -14.28454 -13.98904 -13.84639 -13.56340 -13.40611 -13.25068 -13.08247 -12.88002 -12.63527 -12.55933 -12.38859 -12.31645 -12.21041 -12.14953 -11.95761 -11.76398 -11.40955 -11.35286 -11.26242 -11.09788 -10.57110 -10.41960 -9.49778 -9.30657 -8.19991 -6.32269 1.39579 1.40530 1.49889 1.53963 1.81184 2.40838 2.97821 3.04525 3.12844 3.52631 3.84280 3.93293 4.00038 4.02859 4.05668 4.13207 4.20825 4.32049 4.46837 4.52230 4.53682 4.59789 4.63909 4.72934 4.73673 4.77068 4.82705 4.83587 4.86736 5.01346 5.05604 5.09277 5.13392 5.14689 5.29165 5.32893 5.37925 5.54121 5.73173 5.75077 5.85899 6.01861 6.05433 6.23631 6.32937 6.86122 7.15729 7.37481 8.92527 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.014736 B = 0.003562 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.601276 B = 7859.796110 C = 9487.086860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.548 5.548 3 C 0.012 3.988 4 C 0.039 3.961 5 C 0.116 3.884 6 N -0.584 5.584 7 C 0.509 3.491 8 O -0.565 6.565 9 C -0.127 4.127 10 C -0.093 4.093 11 C -0.094 4.094 12 C 0.020 3.980 13 C -0.541 4.541 14 H 0.066 0.934 15 C -0.006 4.006 16 N -0.938 5.938 17 Si 0.969 3.031 18 H -0.257 1.257 19 H -0.279 1.279 20 H -0.278 1.278 21 C 0.077 3.923 22 C -0.207 4.207 23 C -0.186 4.186 24 H 0.021 0.979 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.023 0.977 30 H 0.082 0.918 31 H 0.028 0.972 32 H 0.089 0.911 33 H 0.108 0.892 34 H 0.113 0.887 35 H 0.106 0.894 36 H 0.042 0.958 37 H 0.044 0.956 38 H 0.061 0.939 39 H 0.057 0.943 40 H -0.016 1.016 41 H -0.015 1.015 42 H 0.263 0.737 43 H 0.162 0.838 44 H 0.100 0.900 45 H 0.109 0.891 46 H 0.120 0.880 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.682 -13.422 -22.108 27.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.272 5.272 3 C -0.136 4.136 4 C -0.091 4.091 5 C -0.006 4.006 6 N -0.315 5.315 7 C 0.299 3.701 8 O -0.445 6.445 9 C -0.167 4.167 10 C -0.131 4.131 11 C -0.132 4.132 12 C -0.018 4.018 13 C -0.579 4.579 14 H 0.084 0.916 15 C -0.203 4.203 16 N -0.578 5.578 17 Si 0.793 3.207 18 H -0.181 1.181 19 H -0.205 1.205 20 H -0.204 1.204 21 C -0.027 4.027 22 C -0.244 4.244 23 C -0.225 4.225 24 H 0.039 0.961 25 H 0.097 0.903 26 H 0.093 0.907 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.042 0.958 30 H 0.101 0.899 31 H 0.046 0.954 32 H 0.108 0.892 33 H 0.126 0.874 34 H 0.131 0.869 35 H 0.124 0.876 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.002 0.998 41 H 0.004 0.996 42 H 0.072 0.928 43 H 0.180 0.820 44 H 0.118 0.882 45 H 0.127 0.873 46 H 0.138 0.862 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.185 -13.941 -21.943 27.921 hybrid contribution -0.030 1.203 1.663 2.052 sum -10.215 -12.739 -20.281 26.037 Atomic orbital electron populations 1.22435 0.86369 1.02890 1.00845 1.61992 1.08765 1.14419 1.42046 1.22578 1.01623 0.88343 1.01042 1.22534 0.95757 0.99079 0.91681 1.21727 0.93004 0.97431 0.88460 1.47430 1.61984 1.05785 1.16278 1.21184 0.76963 0.90842 0.81115 1.90575 1.43775 1.68499 1.41627 1.21737 1.04146 0.90909 0.99868 1.21231 1.00106 0.95686 0.96118 1.21435 1.00339 0.93625 0.97781 1.19045 0.94260 0.95135 0.93315 1.21769 1.37760 0.94277 1.04096 0.91611 1.26091 0.94767 1.04029 0.95449 1.70135 1.40686 1.37990 1.09006 0.85337 0.78020 0.78790 0.78516 1.18070 1.20470 1.20403 1.21989 1.00746 0.78971 1.00974 1.23707 1.02752 1.01944 0.96031 1.23216 0.92376 1.03047 1.03827 0.96073 0.90279 0.90658 0.90298 0.90334 0.95842 0.89923 0.95393 0.89238 0.87420 0.86856 0.87606 0.93873 0.93668 0.92054 0.92386 0.99759 0.99642 0.92833 0.82038 0.88188 0.87307 0.86189 0.91475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.57 127.69 1.22 1.49 16 2 N -0.55 -7.38 5.02 -948.88 -4.76 -12.14 16 3 C 0.01 0.16 9.32 127.69 1.19 1.35 16 4 C 0.04 0.55 5.28 86.30 0.46 1.00 16 5 C 0.12 1.63 5.13 86.38 0.44 2.07 16 6 N -0.58 -11.89 2.84 -797.83 -2.26 -14.15 16 7 C 0.51 14.32 7.46 87.66 0.65 14.98 16 8 O -0.57 -20.60 11.73 -3.04 -0.04 -20.63 16 9 C -0.13 -3.35 4.42 29.85 0.13 -3.22 16 10 C -0.09 -3.45 4.50 30.59 0.14 -3.31 16 11 C -0.09 -3.91 5.15 30.60 0.16 -3.75 16 12 C 0.02 1.09 4.97 29.85 0.15 1.23 16 13 C -0.54 -31.56 9.11 25.60 0.23 -31.32 16 14 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 15 C -0.01 -0.37 5.46 84.66 0.46 0.10 16 16 N -0.94 -59.26 13.29 21.45 0.28 -58.98 16 17 Si 0.97 44.91 29.54 68.60 2.03 46.94 16 18 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 19 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 20 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 21 C 0.08 1.41 6.60 44.99 0.30 1.71 16 22 C -0.21 -4.73 9.63 30.62 0.29 -4.43 16 23 C -0.19 -3.89 9.88 30.62 0.30 -3.59 16 24 H 0.02 0.28 8.14 -2.39 -0.02 0.26 16 25 H 0.08 0.78 8.12 -2.39 -0.02 0.76 16 26 H 0.07 0.77 8.12 -2.39 -0.02 0.75 16 27 H 0.08 0.90 6.47 -2.38 -0.02 0.89 16 28 H 0.08 0.87 8.12 -2.39 -0.02 0.85 16 29 H 0.02 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.08 1.10 8.06 -2.39 -0.02 1.08 16 31 H 0.03 0.48 6.90 -2.38 -0.02 0.47 16 32 H 0.09 1.20 4.88 -2.39 -0.01 1.19 16 33 H 0.11 1.19 8.07 -2.39 -0.02 1.17 16 34 H 0.11 2.44 7.18 -2.39 -0.02 2.43 16 35 H 0.11 2.43 6.92 -2.38 -0.02 2.41 16 36 H 0.04 1.74 8.09 -2.39 -0.02 1.73 16 37 H 0.04 1.82 8.11 -2.39 -0.02 1.80 16 38 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 40 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 41 H -0.01 -0.90 8.14 -2.38 -0.02 -0.92 16 42 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 43 H 0.16 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.10 3.15 5.22 -5.35 -0.03 3.13 16 45 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 46 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 47 H 0.07 1.83 7.60 -2.38 -0.02 1.81 16 Total: -1.00 -73.59 371.43 2.27 -71.32 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: 0.89 Total: 13.35 kcal Atomic # 6 Polarization: -31.83 SS G_CDS: 6.13 Total: -25.70 kcal Atomic # 7 Polarization: -78.53 SS G_CDS: -6.74 Total: -85.27 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -0.04 Total: -20.63 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -73.59 2.27 -71.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588686038.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.340 kcal (2) G-P(sol) polarization free energy of solvation -73.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds