Wall clock time and date at job start Tue Mar 31 2020 05:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46900 * 111.00273 * 2 1 4 4 C 1.46908 * 110.99840 * 123.95569 * 2 1 3 5 5 C 1.52993 * 112.84902 * 62.08958 * 4 2 1 6 6 N 1.46506 * 109.47217 * 49.59376 * 5 4 2 7 7 C 1.34769 * 119.99980 * 185.37817 * 6 5 4 8 8 O 1.21282 * 120.00305 * 0.02562 * 7 6 5 9 9 C 1.50705 * 120.00168 * 179.97438 * 7 6 5 10 10 C 1.52997 * 109.47313 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.46989 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.46989 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.46961 * 180.02562 * 12 11 10 14 14 H 1.07995 * 120.00256 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99585 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00486 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 119.99555 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46797 * 60.00218 * 17 15 13 19 19 H 1.48500 * 109.46850 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47246 * 300.00436 * 17 15 13 21 21 C 1.53781 * 113.61335 * 193.29000 * 4 2 1 22 22 C 1.53962 * 87.01894 * 89.22740 * 21 4 2 23 23 C 1.53780 * 87.11163 * 25.35959 * 22 21 4 24 24 H 1.09001 * 109.47496 * 290.63541 * 1 2 3 25 25 H 1.09003 * 109.47049 * 50.62984 * 1 2 3 26 26 H 1.09001 * 109.47316 * 170.62719 * 1 2 3 27 27 H 1.08994 * 109.47020 * 178.33911 * 3 2 1 28 28 H 1.08994 * 109.46987 * 298.34672 * 3 2 1 29 29 H 1.09003 * 109.46712 * 58.34301 * 3 2 1 30 30 H 1.09004 * 109.46762 * 169.59091 * 5 4 2 31 31 H 1.09006 * 109.47534 * 289.59178 * 5 4 2 32 32 H 0.96997 * 119.99402 * 5.37521 * 6 5 4 33 33 H 1.09006 * 109.46756 * 300.00594 * 9 7 6 34 34 H 1.09003 * 109.46743 * 59.99755 * 9 7 6 35 35 H 1.08993 * 109.47335 * 299.99946 * 10 9 7 36 36 H 1.09001 * 109.47015 * 60.00126 * 10 9 7 37 37 H 1.08993 * 109.47193 * 300.00223 * 11 10 9 38 38 H 1.09001 * 109.46984 * 60.00297 * 11 10 9 39 39 H 1.09002 * 109.47111 * 300.00191 * 12 11 10 40 40 H 1.09001 * 109.47015 * 60.00316 * 12 11 10 41 41 H 0.96999 * 120.00223 * 180.02562 * 16 15 13 42 42 H 1.09001 * 113.61111 * 203.74282 * 21 4 2 43 43 H 1.08998 * 113.61701 * 334.65015 * 21 4 2 44 44 H 1.08999 * 113.53344 * 270.80879 * 22 21 4 45 45 H 1.09001 * 113.74083 * 139.94549 * 22 21 4 46 46 H 1.08996 * 113.61708 * 220.09022 * 23 22 21 47 47 H 1.09003 * 113.68873 * 89.20119 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7661 1.1376 5 6 1.5922 -2.2414 1.0979 6 7 1.8836 -2.7918 -0.2281 7 6 1.5109 -4.0508 -0.5319 8 8 0.9338 -4.7280 0.2923 9 6 1.8101 -4.6169 -1.8962 10 6 1.2848 -6.0514 -1.9796 11 6 1.5881 -6.6258 -3.3649 12 6 1.0623 -8.0602 -3.4485 13 6 1.3615 -8.6261 -4.8128 14 1 1.8757 -8.0233 -5.5466 15 6 0.9798 -9.9140 -5.1237 16 7 0.3541 -10.6484 -4.2299 17 14 1.3501 -10.6153 -6.8150 18 1 2.8176 -10.6114 -7.0420 19 1 0.8398 -12.0076 -6.8961 20 1 0.6867 -9.7843 -7.8516 21 6 3.4964 -0.5441 1.3880 22 6 3.0890 0.6278 2.2997 23 6 1.7469 -0.0959 2.4992 24 1 -0.3634 0.3622 0.9617 25 1 -0.3633 0.6519 -0.7945 26 1 -0.3634 -1.0139 -0.1674 27 1 3.0846 1.3424 0.0298 28 1 1.6702 1.8854 -0.9044 29 1 1.6221 1.9039 0.8748 30 1 2.1549 -2.7922 1.8517 31 1 0.5253 -2.3322 1.3026 32 1 2.3447 -2.2500 -0.8874 33 1 1.3232 -4.0071 -2.6573 34 1 2.8874 -4.6137 -2.0625 35 1 1.7714 -6.6613 -1.2185 36 1 0.2076 -6.0541 -1.8134 37 1 1.1012 -6.0158 -4.1257 38 1 2.6653 -6.6231 -3.5315 39 1 1.5488 -8.6704 -2.6876 40 1 -0.0149 -8.0625 -3.2821 41 1 0.0858 -11.5545 -4.4486 42 1 3.9762 -1.3652 1.9206 43 1 4.0465 -0.2360 0.4989 44 1 2.9987 1.5778 1.7731 45 1 3.6841 0.7031 3.2098 46 1 0.8867 0.5735 2.5060 47 1 1.7461 -0.7944 3.3361 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588702097.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:13 Heat of formation + Delta-G solvation = -23.364849 kcal Electronic energy + Delta-G solvation = -22230.857462 eV Core-core repulsion = 19028.010171 eV Total energy + Delta-G solvation = -3202.847291 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.15279 -39.26623 -34.94737 -34.68988 -34.36564 -32.55725 -30.17617 -28.99851 -27.49209 -25.94495 -25.62643 -24.41619 -22.47531 -21.75629 -20.14150 -19.88752 -19.19934 -17.12378 -16.60741 -16.19324 -15.91506 -15.59931 -15.24462 -15.05998 -14.43640 -14.38072 -14.19656 -13.74007 -13.47431 -13.10467 -12.83820 -12.72404 -12.54384 -12.27814 -12.10481 -11.86490 -11.74308 -11.60128 -11.53653 -11.15088 -10.91826 -10.89972 -10.57685 -10.49195 -10.44517 -10.33378 -9.68634 -9.54099 -9.15489 -8.98191 -8.93417 -8.72034 -8.25837 -5.90762 -3.93137 2.87897 3.15951 3.38460 3.42533 3.44978 3.50605 4.04333 4.14544 4.32612 4.37073 4.52771 4.75497 4.86958 4.98097 5.07850 5.11073 5.14853 5.26717 5.30858 5.33812 5.37239 5.44136 5.44430 5.49689 5.51832 5.52909 5.60518 5.66553 5.68211 5.79966 5.98910 6.23174 6.39943 6.44810 6.58637 6.62999 6.70192 6.92447 7.10558 7.27151 7.66216 7.79125 7.96203 8.11243 8.43481 8.53088 9.14531 9.70145 11.20567 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.039878 B = 0.002360 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.980919 B =11859.619160 C =12041.826675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.516 5.516 3 C 0.014 3.986 4 C 0.075 3.925 5 C 0.143 3.857 6 N -0.725 5.725 7 C 0.510 3.490 8 O -0.543 6.543 9 C -0.138 4.138 10 C -0.103 4.103 11 C -0.110 4.110 12 C 0.020 3.980 13 C -0.520 4.520 14 H 0.054 0.946 15 C 0.055 3.945 16 N -0.896 5.896 17 Si 0.891 3.109 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.277 1.277 21 C -0.129 4.129 22 C -0.160 4.160 23 C -0.162 4.162 24 H 0.029 0.971 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.033 0.967 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.406 0.594 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.046 0.954 38 H 0.046 0.954 39 H 0.015 0.985 40 H 0.015 0.985 41 H 0.260 0.740 42 H 0.090 0.910 43 H 0.077 0.923 44 H 0.095 0.905 45 H 0.068 0.932 46 H 0.068 0.932 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.018 28.075 12.606 31.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.238 5.238 3 C -0.134 4.134 4 C -0.016 4.016 5 C 0.018 3.982 6 N -0.378 5.378 7 C 0.297 3.703 8 O -0.420 6.420 9 C -0.177 4.177 10 C -0.141 4.141 11 C -0.148 4.148 12 C -0.017 4.017 13 C -0.558 4.558 14 H 0.072 0.928 15 C -0.146 4.146 16 N -0.535 5.535 17 Si 0.719 3.281 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.203 1.203 21 C -0.167 4.167 22 C -0.197 4.197 23 C -0.202 4.202 24 H 0.048 0.952 25 H 0.088 0.912 26 H 0.092 0.908 27 H 0.095 0.905 28 H 0.086 0.914 29 H 0.051 0.949 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.241 0.759 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.070 0.930 42 H 0.108 0.892 43 H 0.096 0.904 44 H 0.113 0.887 45 H 0.087 0.913 46 H 0.087 0.913 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.664 27.173 12.784 30.390 hybrid contribution 0.047 0.271 -0.421 0.503 sum 4.711 27.443 12.363 30.466 Atomic orbital electron populations 1.22413 0.86692 1.03132 1.00431 1.61961 1.08333 1.13568 1.39978 1.22779 1.01154 0.88785 1.00680 1.22537 0.96484 0.93177 0.89373 1.21172 1.00973 0.90283 0.85772 1.45897 1.61437 1.14785 1.15683 1.21089 0.77922 0.80918 0.90366 1.90695 1.41259 1.59211 1.50791 1.21765 1.03145 0.99541 0.93293 1.21437 1.01345 0.92017 0.99264 1.21647 0.99956 0.99553 0.93623 1.19093 0.96371 0.89586 0.96669 1.21259 1.37233 0.98285 0.99044 0.92814 1.25044 0.95358 0.97217 0.96971 1.69964 1.40049 1.09395 1.34125 0.86674 0.78596 0.78022 0.84775 1.20294 1.21351 1.20298 1.23142 0.94705 0.98793 1.00018 1.23371 0.97064 0.98728 1.00494 1.23468 0.98122 1.00251 0.98381 0.95224 0.91173 0.90802 0.90465 0.91435 0.94865 0.91325 0.91630 0.75867 0.89235 0.89303 0.91905 0.91912 0.93513 0.93517 0.96619 0.96617 0.93019 0.89170 0.90430 0.88697 0.91337 0.91345 0.89254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.16 60.06 0.55 0.70 16 2 N -0.52 -3.67 4.49 -234.46 -1.05 -4.72 16 3 C 0.01 0.08 7.74 60.06 0.46 0.54 16 4 C 0.08 0.54 0.73 -130.79 -0.10 0.45 16 5 C 0.14 1.41 4.54 -4.04 -0.02 1.39 16 6 N -0.72 -7.85 5.39 -60.29 -0.32 -8.17 16 7 C 0.51 7.44 7.83 -10.99 -0.09 7.36 16 8 O -0.54 -10.26 15.97 5.56 0.09 -10.18 16 9 C -0.14 -1.93 5.70 -27.88 -0.16 -2.09 16 10 C -0.10 -1.91 4.50 -26.73 -0.12 -2.03 16 11 C -0.11 -2.34 5.15 -26.73 -0.14 -2.48 16 12 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 13 C -0.52 -15.24 9.11 -34.44 -0.31 -15.56 16 14 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 15 C 0.05 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -27.92 13.29 55.43 0.74 -27.19 16 17 Si 0.89 22.19 29.54 -169.99 -5.02 17.17 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 19 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 C -0.13 -0.81 6.84 -25.82 -0.18 -0.98 16 22 C -0.16 -0.87 7.28 -25.82 -0.19 -1.06 16 23 C -0.16 -1.04 6.65 -25.92 -0.17 -1.21 16 24 H 0.03 0.20 6.70 -51.93 -0.35 -0.14 16 25 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 26 H 0.07 0.65 7.18 -51.93 -0.37 0.28 16 27 H 0.08 0.39 5.38 -51.93 -0.28 0.11 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.03 0.17 6.10 -51.93 -0.32 -0.14 16 30 H 0.07 0.71 7.96 -51.93 -0.41 0.30 16 31 H 0.07 0.74 7.44 -51.93 -0.39 0.35 16 32 H 0.41 3.69 8.16 -40.82 -0.33 3.36 16 33 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 36 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 37 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 42 H 0.09 0.58 7.98 -51.93 -0.41 0.17 16 43 H 0.08 0.47 7.08 -51.93 -0.37 0.11 16 44 H 0.09 0.46 4.65 -51.93 -0.24 0.22 16 45 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.07 0.44 6.55 -51.93 -0.34 0.10 16 47 H 0.09 0.57 8.10 -51.93 -0.42 0.15 16 LS Contribution 364.39 15.07 5.49 5.49 Total: -1.00 -33.55 364.39 -9.19 -42.74 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -8.42 Total: -2.10 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: -0.69 Total: -13.04 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: -0.64 Total: -40.08 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.09 Total: -10.18 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.55 -9.19 -42.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588702097.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.373 kcal (2) G-P(sol) polarization free energy of solvation -33.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds