Wall clock time and date at job start Tue Mar 31 2020 05:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34773 * 120.00164 * 2 1 4 4 O 1.21286 * 120.00358 * 180.02562 * 3 2 1 5 5 C 1.50708 * 119.99776 * 359.97438 * 3 2 1 6 6 C 1.53001 * 109.46773 * 179.97438 * 5 3 2 7 7 C 1.53003 * 109.46852 * 179.97438 * 6 5 3 8 8 C 1.52993 * 109.47093 * 180.02562 * 7 6 5 9 9 C 1.50708 * 109.47015 * 180.02562 * 8 7 6 10 10 H 1.07992 * 120.00183 * 0.02562 * 9 8 7 11 11 C 1.37881 * 119.99657 * 180.02562 * 9 8 7 12 12 N 1.31511 * 120.00173 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99562 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.47309 * 0.02562 * 13 11 9 15 15 H 1.48506 * 109.46864 * 119.99717 * 13 11 9 16 16 H 1.48491 * 109.47224 * 239.99982 * 13 11 9 17 17 C 1.46502 * 119.99967 * 180.02562 * 2 1 3 18 18 C 1.53114 * 109.52513 * 59.99761 * 17 2 1 19 19 C 1.53037 * 109.31211 * 182.42206 * 18 17 2 20 20 N 1.46929 * 109.47910 * 59.15772 * 19 18 17 21 21 C 1.46900 * 110.98461 * 174.18240 * 20 19 18 22 22 C 1.46850 * 111.22205 * 298.28247 * 20 19 18 23 23 C 1.53037 * 109.52028 * 61.74456 * 22 20 19 24 24 H 1.08998 * 109.46901 * 269.99911 * 1 2 3 25 25 H 1.08994 * 109.47238 * 29.99920 * 1 2 3 26 26 H 1.09000 * 109.46961 * 150.00501 * 1 2 3 27 27 H 1.08997 * 109.46936 * 299.99865 * 5 3 2 28 28 H 1.09001 * 109.46570 * 60.00243 * 5 3 2 29 29 H 1.08997 * 109.47324 * 299.99682 * 6 5 3 30 30 H 1.08994 * 109.47274 * 60.00345 * 6 5 3 31 31 H 1.09002 * 109.47048 * 300.00429 * 7 6 5 32 32 H 1.09000 * 109.46934 * 59.99698 * 7 6 5 33 33 H 1.09002 * 109.47520 * 300.00136 * 8 7 6 34 34 H 1.09001 * 109.47212 * 60.00761 * 8 7 6 35 35 H 0.96998 * 119.99778 * 180.02562 * 12 11 9 36 36 H 1.09006 * 109.57214 * 180.15926 * 17 2 1 37 37 H 1.09002 * 109.50377 * 302.38331 * 18 17 2 38 38 H 1.09003 * 109.50316 * 62.46326 * 18 17 2 39 39 H 1.08994 * 109.46612 * 179.21753 * 19 18 17 40 40 H 1.09007 * 109.46083 * 299.18512 * 19 18 17 41 41 H 1.09001 * 109.47132 * 184.23155 * 21 20 19 42 42 H 1.08998 * 109.47131 * 304.22754 * 21 20 19 43 43 H 1.08995 * 109.47646 * 64.22924 * 21 20 19 44 44 H 1.08997 * 109.46198 * 301.72747 * 22 20 19 45 45 H 1.08999 * 109.45191 * 181.75464 * 22 20 19 46 46 H 1.08997 * 109.50150 * 180.88044 * 23 22 20 47 47 H 1.08997 * 109.53578 * 60.77667 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3853 2.4723 -0.0006 6 6 2.3796 3.6352 0.0002 7 6 1.6146 4.9602 -0.0011 8 6 2.6088 6.1231 -0.0009 9 6 1.8553 7.4283 -0.0015 10 1 0.7754 7.4283 -0.0015 11 6 2.5447 8.6223 -0.0020 12 7 3.8598 8.6223 -0.0026 13 14 1.6107 10.2400 -0.0035 14 1 0.1506 9.9687 -0.0032 15 1 1.9689 11.0195 1.2087 16 1 1.9698 11.0179 -1.2163 17 6 2.1975 -1.2687 -0.0006 18 6 1.8284 -2.0722 -1.2507 19 6 2.5495 -3.4216 -1.2162 20 7 2.1569 -4.1561 -0.0058 21 6 2.7217 -5.5122 -0.0069 22 6 2.5438 -3.4259 1.2081 23 6 1.8225 -2.0767 1.2450 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8899 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 0.7591 2.5298 -0.8908 28 1 0.7584 2.5302 0.8892 29 1 3.0056 3.5775 0.8906 30 1 3.0069 3.5775 -0.8893 31 1 0.9889 5.0177 -0.8917 32 1 0.9869 5.0182 0.8882 33 1 3.2349 6.0659 0.8895 34 1 3.2360 6.0650 -0.8905 35 1 4.3448 9.4623 -0.0026 36 1 3.2695 -1.0715 0.0024 37 1 0.7510 -2.2358 -1.2732 38 1 2.1314 -1.5203 -2.1405 39 1 2.2776 -4.0013 -2.0982 40 1 3.6271 -3.2574 -1.2076 41 1 2.3552 -6.0592 0.8618 42 1 2.4198 -6.0308 -0.9167 43 1 3.8093 -5.4528 0.0336 44 1 3.6213 -3.2618 1.2053 45 1 2.2676 -4.0095 2.0863 46 1 2.1219 -1.5283 2.1382 47 1 0.7449 -2.2397 1.2621 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588750949.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:56 Heat of formation + Delta-G solvation = -56.974677 kcal Electronic energy + Delta-G solvation = -22245.010999 eV Core-core repulsion = 19040.706277 eV Total energy + Delta-G solvation = -3204.304722 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.38959 -38.78819 -35.89712 -34.86155 -32.89253 -32.27167 -31.25302 -29.63861 -27.41156 -26.61065 -25.38323 -23.53888 -23.19476 -21.90265 -20.01195 -19.93405 -19.02702 -16.93080 -16.63695 -16.11733 -15.96074 -15.54570 -15.45735 -14.91328 -14.52748 -14.41924 -13.77529 -13.70611 -13.47917 -13.14246 -12.81646 -12.80712 -12.64623 -12.41809 -12.17394 -11.99200 -11.63753 -11.60356 -11.54433 -11.48057 -10.99376 -10.93851 -10.80253 -10.50255 -10.46021 -10.37284 -9.70037 -9.58376 -9.18967 -8.94516 -8.75302 -8.73355 -8.29006 -5.93546 -3.95870 2.72889 2.89362 3.34272 3.41346 3.45404 3.52205 4.36057 4.48416 4.50395 4.65044 4.75276 4.78412 4.90408 4.96745 5.07867 5.11647 5.13695 5.23994 5.25553 5.35721 5.37352 5.41415 5.43227 5.46142 5.46497 5.51292 5.61308 5.68785 5.83589 5.89624 6.01243 6.17483 6.32084 6.44145 6.58976 6.63574 6.65683 6.87401 7.04906 7.22494 7.34538 7.76665 7.92671 8.08241 8.25773 8.50091 9.12147 9.67655 11.17827 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.052210 B = 0.002350 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.165297 B =11912.195286 C =12085.043267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.619 5.619 3 C 0.513 3.487 4 O -0.537 6.537 5 C -0.136 4.136 6 C -0.104 4.104 7 C -0.110 4.110 8 C 0.019 3.981 9 C -0.519 4.519 10 H 0.055 0.945 11 C 0.054 3.946 12 N -0.895 5.895 13 Si 0.891 3.109 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.284 1.284 17 C 0.137 3.863 18 C -0.125 4.125 19 C 0.058 3.942 20 N -0.545 5.545 21 C 0.025 3.975 22 C 0.058 3.942 23 C -0.124 4.124 24 H 0.055 0.945 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.046 0.954 32 H 0.046 0.954 33 H 0.016 0.984 34 H 0.016 0.984 35 H 0.259 0.741 36 H 0.097 0.903 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.078 0.922 40 H 0.036 0.964 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.025 0.975 44 H 0.036 0.964 45 H 0.078 0.922 46 H 0.071 0.929 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.018 -28.667 -0.097 29.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.353 5.353 3 C 0.303 3.697 4 O -0.413 6.413 5 C -0.176 4.176 6 C -0.142 4.142 7 C -0.147 4.147 8 C -0.018 4.018 9 C -0.557 4.557 10 H 0.073 0.927 11 C -0.147 4.147 12 N -0.535 5.535 13 Si 0.719 3.281 14 H -0.198 1.198 15 H -0.211 1.211 16 H -0.211 1.211 17 C 0.034 3.966 18 C -0.164 4.164 19 C -0.071 4.071 20 N -0.269 5.269 21 C -0.124 4.124 22 C -0.071 4.071 23 C -0.162 4.162 24 H 0.074 0.926 25 H 0.094 0.906 26 H 0.090 0.910 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.034 0.966 34 H 0.034 0.966 35 H 0.069 0.931 36 H 0.115 0.885 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.055 0.945 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.044 0.956 44 H 0.054 0.946 45 H 0.096 0.904 46 H 0.090 0.910 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.728 -28.570 -0.099 29.351 hybrid contribution 0.329 0.945 0.017 1.000 sum -6.399 -27.625 -0.082 28.357 Atomic orbital electron populations 1.21784 0.79638 1.03328 1.01925 1.47978 1.06946 1.05619 1.74770 1.21150 0.88239 0.85519 0.74806 1.90685 1.14252 1.87276 1.49070 1.21820 1.00048 0.91985 1.03764 1.21460 0.97045 0.92760 1.02887 1.21644 0.99054 0.94007 1.00033 1.19104 0.94082 0.91302 0.97306 1.21326 0.93017 0.91187 1.50172 0.92695 1.25054 0.94852 0.99254 0.95521 1.69987 1.06042 1.26365 1.51081 0.86553 0.80079 0.83931 0.77523 1.19779 1.21074 1.21070 1.21070 0.98275 0.82812 0.94483 1.21944 1.01663 0.94717 0.98064 1.22075 0.97701 0.94430 0.92852 1.61989 1.59879 1.02763 1.02317 1.22348 0.97259 0.89928 1.02821 1.22061 0.97719 0.94497 0.92782 1.21927 1.01642 0.94619 0.98058 0.92609 0.90601 0.90993 0.89179 0.89202 0.91869 0.91876 0.93507 0.93496 0.96602 0.96595 0.93120 0.88453 0.90625 0.90986 0.90349 0.94545 0.91293 0.91318 0.95605 0.94553 0.90368 0.91028 0.90681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.59 9.25 59.85 0.55 1.14 16 2 N -0.62 -6.86 2.77 -173.79 -0.48 -7.34 16 3 C 0.51 7.54 7.67 -10.98 -0.08 7.45 16 4 O -0.54 -10.09 15.31 5.55 0.09 -10.00 16 5 C -0.14 -1.89 4.25 -27.88 -0.12 -2.01 16 6 C -0.10 -1.90 4.50 -26.73 -0.12 -2.02 16 7 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 8 C 0.02 0.51 4.97 -27.88 -0.14 0.38 16 9 C -0.52 -15.10 9.11 -34.44 -0.31 -15.41 16 10 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 11 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 12 N -0.90 -27.76 13.29 55.43 0.74 -27.03 16 13 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 14 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 15 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 16 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 17 C 0.14 1.42 2.59 -67.81 -0.18 1.24 16 18 C -0.13 -1.07 5.40 -26.65 -0.14 -1.22 16 19 C 0.06 0.45 5.47 -3.79 -0.02 0.43 16 20 N -0.54 -4.25 4.91 -242.89 -1.19 -5.44 16 21 C 0.02 0.15 9.59 60.06 0.58 0.73 16 22 C 0.06 0.45 5.47 -3.83 -0.02 0.43 16 23 C -0.12 -1.07 5.41 -26.65 -0.14 -1.21 16 24 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.08 0.54 6.44 -51.93 -0.33 0.20 16 26 H 0.07 0.45 6.39 -51.93 -0.33 0.12 16 27 H 0.09 1.08 7.40 -51.93 -0.38 0.70 16 28 H 0.09 1.09 8.11 -51.93 -0.42 0.67 16 29 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 30 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 31 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 36 H 0.10 1.27 6.91 -51.93 -0.36 0.91 16 37 H 0.08 0.60 6.58 -51.93 -0.34 0.26 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 0.53 8.09 -51.93 -0.42 0.11 16 40 H 0.04 0.31 8.14 -51.92 -0.42 -0.12 16 41 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 43 H 0.03 0.16 8.14 -51.93 -0.42 -0.27 16 44 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 45 H 0.08 0.53 8.12 -51.93 -0.42 0.11 16 46 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.07 0.61 7.59 -51.93 -0.39 0.22 16 LS Contribution 366.97 15.07 5.53 5.53 Total: -1.00 -33.76 366.97 -9.59 -43.35 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -8.86 Total: -5.11 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: -0.39 Total: -11.02 kcal Atomic # 7 Polarization: -38.87 SS G_CDS: -0.94 Total: -39.80 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.09 Total: -10.00 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.76 -9.59 -43.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588750949.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.622 kcal (2) G-P(sol) polarization free energy of solvation -33.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds