Wall clock time and date at job start Tue Mar 31 2020 05:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34773 * 120.00164 * 2 1 4 4 O 1.21286 * 120.00358 * 180.02562 * 3 2 1 5 5 C 1.50708 * 119.99776 * 359.97438 * 3 2 1 6 6 C 1.53001 * 109.46773 * 179.97438 * 5 3 2 7 7 C 1.53003 * 109.46852 * 179.97438 * 6 5 3 8 8 C 1.52993 * 109.47093 * 180.02562 * 7 6 5 9 9 C 1.50708 * 109.47015 * 180.02562 * 8 7 6 10 10 H 1.07992 * 120.00183 * 0.02562 * 9 8 7 11 11 C 1.37881 * 119.99657 * 180.02562 * 9 8 7 12 12 N 1.31511 * 120.00173 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99562 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.47309 * 0.02562 * 13 11 9 15 15 H 1.48506 * 109.46864 * 119.99717 * 13 11 9 16 16 H 1.48491 * 109.47224 * 239.99982 * 13 11 9 17 17 C 1.46502 * 119.99967 * 180.02562 * 2 1 3 18 18 C 1.53114 * 109.52513 * 59.99761 * 17 2 1 19 19 C 1.53037 * 109.31211 * 182.42206 * 18 17 2 20 20 N 1.46929 * 109.47910 * 59.15772 * 19 18 17 21 21 C 1.46900 * 110.98461 * 174.18240 * 20 19 18 22 22 C 1.46850 * 111.22205 * 298.28247 * 20 19 18 23 23 C 1.53037 * 109.52028 * 61.74456 * 22 20 19 24 24 H 1.08998 * 109.46901 * 269.99911 * 1 2 3 25 25 H 1.08994 * 109.47238 * 29.99920 * 1 2 3 26 26 H 1.09000 * 109.46961 * 150.00501 * 1 2 3 27 27 H 1.08997 * 109.46936 * 299.99865 * 5 3 2 28 28 H 1.09001 * 109.46570 * 60.00243 * 5 3 2 29 29 H 1.08997 * 109.47324 * 299.99682 * 6 5 3 30 30 H 1.08994 * 109.47274 * 60.00345 * 6 5 3 31 31 H 1.09002 * 109.47048 * 300.00429 * 7 6 5 32 32 H 1.09000 * 109.46934 * 59.99698 * 7 6 5 33 33 H 1.09002 * 109.47520 * 300.00136 * 8 7 6 34 34 H 1.09001 * 109.47212 * 60.00761 * 8 7 6 35 35 H 0.96998 * 119.99778 * 180.02562 * 12 11 9 36 36 H 1.09006 * 109.57214 * 180.15926 * 17 2 1 37 37 H 1.09002 * 109.50377 * 302.38331 * 18 17 2 38 38 H 1.09003 * 109.50316 * 62.46326 * 18 17 2 39 39 H 1.08994 * 109.46612 * 179.21753 * 19 18 17 40 40 H 1.09007 * 109.46083 * 299.18512 * 19 18 17 41 41 H 1.09001 * 109.47132 * 184.23155 * 21 20 19 42 42 H 1.08998 * 109.47131 * 304.22754 * 21 20 19 43 43 H 1.08995 * 109.47646 * 64.22924 * 21 20 19 44 44 H 1.08997 * 109.46198 * 301.72747 * 22 20 19 45 45 H 1.08999 * 109.45191 * 181.75464 * 22 20 19 46 46 H 1.08997 * 109.50150 * 180.88044 * 23 22 20 47 47 H 1.08997 * 109.53578 * 60.77667 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3853 2.4723 -0.0006 6 6 2.3796 3.6352 0.0002 7 6 1.6146 4.9602 -0.0011 8 6 2.6088 6.1231 -0.0009 9 6 1.8553 7.4283 -0.0015 10 1 0.7754 7.4283 -0.0015 11 6 2.5447 8.6223 -0.0020 12 7 3.8598 8.6223 -0.0026 13 14 1.6107 10.2400 -0.0035 14 1 0.1506 9.9687 -0.0032 15 1 1.9689 11.0195 1.2087 16 1 1.9698 11.0179 -1.2163 17 6 2.1975 -1.2687 -0.0006 18 6 1.8284 -2.0722 -1.2507 19 6 2.5495 -3.4216 -1.2162 20 7 2.1569 -4.1561 -0.0058 21 6 2.7217 -5.5122 -0.0069 22 6 2.5438 -3.4259 1.2081 23 6 1.8225 -2.0767 1.2450 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8899 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 0.7591 2.5298 -0.8908 28 1 0.7584 2.5302 0.8892 29 1 3.0056 3.5775 0.8906 30 1 3.0069 3.5775 -0.8893 31 1 0.9889 5.0177 -0.8917 32 1 0.9869 5.0182 0.8882 33 1 3.2349 6.0659 0.8895 34 1 3.2360 6.0650 -0.8905 35 1 4.3448 9.4623 -0.0026 36 1 3.2695 -1.0715 0.0024 37 1 0.7510 -2.2358 -1.2732 38 1 2.1314 -1.5203 -2.1405 39 1 2.2776 -4.0013 -2.0982 40 1 3.6271 -3.2574 -1.2076 41 1 2.3552 -6.0592 0.8618 42 1 2.4198 -6.0308 -0.9167 43 1 3.8093 -5.4528 0.0336 44 1 3.6213 -3.2618 1.2053 45 1 2.2676 -4.0095 2.0863 46 1 2.1219 -1.5283 2.1382 47 1 0.7449 -2.2397 1.2621 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588750949.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:55 Heat of formation + Delta-G solvation = -78.666326 kcal Electronic energy + Delta-G solvation = -22245.951620 eV Core-core repulsion = 19040.706277 eV Total energy + Delta-G solvation = -3205.245343 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.34097 -39.63408 -36.89255 -36.52328 -34.66329 -33.35650 -31.91560 -31.31791 -28.15784 -27.79172 -26.70924 -24.49533 -24.20503 -23.16476 -21.74860 -20.73649 -20.01416 -18.44655 -17.91527 -17.45466 -17.06735 -16.53967 -16.27896 -16.13912 -15.78054 -15.53574 -14.74468 -14.68696 -14.54348 -14.30456 -14.04853 -13.64689 -13.57734 -13.44737 -13.41508 -13.30234 -12.98391 -12.84662 -12.56650 -12.31299 -12.23686 -12.20098 -12.15132 -12.13275 -11.65006 -11.56432 -11.38459 -11.33784 -11.12433 -10.68959 -10.56052 -9.63211 -9.36707 -8.18867 -6.31054 1.40373 1.41522 1.55056 1.61401 1.98601 2.41899 2.93358 3.13782 3.54531 3.79954 3.80666 3.99384 4.04048 4.11439 4.12886 4.25830 4.32498 4.44409 4.49853 4.55374 4.59818 4.63569 4.65082 4.71532 4.75242 4.81164 4.83675 4.86499 4.93852 4.98031 5.02090 5.03099 5.13035 5.18479 5.27382 5.32712 5.36913 5.56421 5.60925 5.77662 5.87827 6.03823 6.05579 6.25083 6.38049 6.87630 7.18400 7.38538 8.93656 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.052210 B = 0.002350 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.165297 B =11912.195286 C =12085.043267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.610 5.610 3 C 0.507 3.493 4 O -0.593 6.593 5 C -0.125 4.125 6 C -0.095 4.095 7 C -0.094 4.094 8 C 0.018 3.982 9 C -0.539 4.539 10 H 0.067 0.933 11 C -0.009 4.009 12 N -0.938 5.938 13 Si 0.971 3.029 14 H -0.256 1.256 15 H -0.279 1.279 16 H -0.279 1.279 17 C 0.134 3.866 18 C -0.117 4.117 19 C 0.059 3.941 20 N -0.548 5.548 21 C 0.023 3.977 22 C 0.059 3.941 23 C -0.115 4.115 24 H 0.071 0.929 25 H 0.088 0.912 26 H 0.091 0.909 27 H 0.118 0.882 28 H 0.117 0.883 29 H 0.040 0.960 30 H 0.041 0.959 31 H 0.062 0.938 32 H 0.061 0.939 33 H -0.016 1.016 34 H -0.016 1.016 35 H 0.263 0.737 36 H 0.062 0.938 37 H 0.091 0.909 38 H 0.062 0.938 39 H 0.094 0.906 40 H 0.023 0.977 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.022 0.978 44 H 0.023 0.977 45 H 0.093 0.907 46 H 0.061 0.939 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.434 -29.645 -0.133 31.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.341 5.341 3 C 0.297 3.703 4 O -0.473 6.473 5 C -0.164 4.164 6 C -0.134 4.134 7 C -0.132 4.132 8 C -0.019 4.019 9 C -0.577 4.577 10 H 0.085 0.915 11 C -0.206 4.206 12 N -0.579 5.579 13 Si 0.795 3.205 14 H -0.180 1.180 15 H -0.205 1.205 16 H -0.205 1.205 17 C 0.030 3.970 18 C -0.155 4.155 19 C -0.070 4.070 20 N -0.272 5.272 21 C -0.124 4.124 22 C -0.070 4.070 23 C -0.154 4.154 24 H 0.089 0.911 25 H 0.106 0.894 26 H 0.109 0.891 27 H 0.136 0.864 28 H 0.135 0.865 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.002 0.998 34 H 0.002 0.998 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.109 0.891 38 H 0.081 0.919 39 H 0.112 0.888 40 H 0.041 0.959 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.040 0.960 44 H 0.041 0.959 45 H 0.111 0.889 46 H 0.080 0.920 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.199 -29.596 -0.135 31.304 hybrid contribution 1.429 1.183 0.030 1.856 sum -8.770 -28.413 -0.105 29.735 Atomic orbital electron populations 1.22104 0.76938 1.04955 1.03435 1.48028 1.08558 1.04746 1.72807 1.21300 0.87615 0.86795 0.74550 1.90671 1.16577 1.88066 1.52016 1.21696 0.98880 0.89444 1.06378 1.21249 0.97495 0.93793 1.00825 1.21440 0.97784 0.92589 1.01377 1.19067 0.94711 0.93891 0.94255 1.21783 0.93777 0.92138 1.50044 0.91466 1.26126 0.95818 1.03844 0.94839 1.70144 1.08097 1.27681 1.51985 0.85309 0.79216 0.78301 0.77654 1.17989 1.20501 1.20487 1.21120 0.96427 0.82946 0.96494 1.21869 1.02523 0.94604 0.96522 1.22079 0.96864 0.94337 0.93694 1.62034 1.59907 1.03352 1.01952 1.22414 0.97064 0.89099 1.03863 1.22060 0.96881 0.94387 0.93633 1.21846 1.02439 0.94529 0.96546 0.91085 0.89388 0.89081 0.86363 0.86527 0.94096 0.94061 0.91968 0.91999 0.99803 0.99775 0.92871 0.92014 0.89101 0.91901 0.88819 0.95868 0.90293 0.90293 0.95960 0.95867 0.88897 0.92002 0.89249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.80 9.25 127.77 1.18 1.98 16 2 N -0.61 -12.71 2.77 -822.14 -2.28 -14.98 16 3 C 0.51 14.82 7.67 87.66 0.67 15.49 16 4 O -0.59 -23.46 15.31 -3.05 -0.05 -23.51 16 5 C -0.12 -3.25 4.25 29.85 0.13 -3.12 16 6 C -0.10 -3.57 4.50 30.60 0.14 -3.44 16 7 C -0.09 -3.92 5.15 30.59 0.16 -3.77 16 8 C 0.02 1.00 4.97 29.85 0.15 1.15 16 9 C -0.54 -31.58 9.11 25.60 0.23 -31.35 16 10 H 0.07 3.68 7.74 -2.91 -0.02 3.66 16 11 C -0.01 -0.55 5.46 84.66 0.46 -0.09 16 12 N -0.94 -59.67 13.29 21.45 0.28 -59.39 16 13 Si 0.97 45.15 29.54 68.60 2.03 47.18 16 14 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 15 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 16 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 17 C 0.13 2.72 2.59 45.07 0.12 2.83 16 18 C -0.12 -1.85 5.40 30.64 0.17 -1.69 16 19 C 0.06 0.86 5.47 86.31 0.47 1.33 16 20 N -0.55 -7.61 4.91 -922.37 -4.53 -12.14 16 21 C 0.02 0.24 9.59 127.69 1.22 1.47 16 22 C 0.06 0.87 5.47 86.33 0.47 1.34 16 23 C -0.11 -1.85 5.41 30.65 0.17 -1.69 16 24 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.09 0.88 6.44 -2.39 -0.02 0.86 16 26 H 0.09 0.78 6.39 -2.39 -0.02 0.76 16 27 H 0.12 2.45 7.40 -2.39 -0.02 2.43 16 28 H 0.12 2.45 8.11 -2.39 -0.02 2.43 16 29 H 0.04 1.68 8.10 -2.39 -0.02 1.66 16 30 H 0.04 1.69 8.10 -2.39 -0.02 1.68 16 31 H 0.06 2.39 8.14 -2.39 -0.02 2.38 16 32 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 33 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 34 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 35 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 36 H 0.06 1.72 6.91 -2.38 -0.02 1.70 16 37 H 0.09 1.18 6.58 -2.39 -0.02 1.17 16 38 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.09 1.09 8.09 -2.39 -0.02 1.07 16 40 H 0.02 0.40 8.14 -2.38 -0.02 0.38 16 41 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.08 0.67 8.09 -2.39 -0.02 0.65 16 43 H 0.02 0.25 8.14 -2.39 -0.02 0.23 16 44 H 0.02 0.40 8.14 -2.39 -0.02 0.38 16 45 H 0.09 1.10 8.12 -2.39 -0.02 1.08 16 46 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 47 H 0.09 1.20 7.59 -2.39 -0.02 1.18 16 Total: -1.00 -76.45 366.97 2.10 -74.35 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: 0.90 Total: 8.04 kcal Atomic # 6 Polarization: -25.29 SS G_CDS: 5.74 Total: -19.55 kcal Atomic # 7 Polarization: -79.99 SS G_CDS: -6.52 Total: -86.51 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -0.05 Total: -23.51 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -76.45 2.10 -74.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588750949.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.312 kcal (2) G-P(sol) polarization free energy of solvation -76.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds