Wall clock time and date at job start Tue Mar 31 2020 05:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46897 * 111.00162 * 2 1 4 4 C 1.46906 * 110.99862 * 123.94587 * 2 1 3 5 5 C 1.53007 * 109.46706 * 77.43909 * 4 2 1 6 6 N 1.46504 * 112.84869 * 69.76740 * 5 4 2 7 7 C 1.34771 * 119.99911 * 65.75266 * 6 5 4 8 8 O 1.21287 * 120.00475 * 354.76533 * 7 6 5 9 9 C 1.50705 * 119.99929 * 174.76270 * 7 6 5 10 10 C 1.53000 * 109.47194 * 180.02562 * 9 7 6 11 11 C 1.52994 * 109.46979 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47318 * 179.97438 * 11 10 9 13 13 C 1.50705 * 109.47533 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99545 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00038 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00073 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 119.99964 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47220 * 59.99652 * 17 15 13 19 19 H 1.48499 * 109.47309 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46967 * 299.99940 * 17 15 13 21 21 C 1.53787 * 113.61037 * 200.95866 * 5 4 2 22 22 C 1.54053 * 86.97905 * 140.02058 * 21 5 4 23 23 C 1.53777 * 87.08143 * 334.56684 * 22 21 5 24 24 H 1.08998 * 109.47105 * 290.15564 * 1 2 3 25 25 H 1.08990 * 109.47121 * 50.15688 * 1 2 3 26 26 H 1.09001 * 109.47113 * 170.15463 * 1 2 3 27 27 H 1.09003 * 109.47308 * 183.95688 * 3 2 1 28 28 H 1.09009 * 109.46656 * 303.94635 * 3 2 1 29 29 H 1.08995 * 109.47450 * 63.94450 * 3 2 1 30 30 H 1.08995 * 109.47446 * 317.44108 * 4 2 1 31 31 H 1.08998 * 109.47150 * 197.43577 * 4 2 1 32 32 H 0.96998 * 119.99861 * 245.47396 * 6 5 4 33 33 H 1.08997 * 109.47041 * 299.99847 * 9 7 6 34 34 H 1.08995 * 109.46675 * 59.99675 * 9 7 6 35 35 H 1.08997 * 109.46861 * 299.99786 * 10 9 7 36 36 H 1.08993 * 109.47219 * 59.99985 * 10 9 7 37 37 H 1.09003 * 109.47490 * 299.99917 * 11 10 9 38 38 H 1.09007 * 109.47327 * 59.99960 * 11 10 9 39 39 H 1.09004 * 109.47610 * 300.00416 * 12 11 10 40 40 H 1.09008 * 109.47111 * 60.00095 * 12 11 10 41 41 H 0.96995 * 120.00327 * 180.02562 * 16 15 13 42 42 H 1.08998 * 113.61337 * 254.61208 * 21 5 4 43 43 H 1.08997 * 113.61468 * 25.52216 * 21 5 4 44 44 H 1.09005 * 113.61650 * 220.02226 * 22 21 5 45 45 H 1.08998 * 113.61127 * 89.12057 * 22 21 5 46 46 H 1.08996 * 113.61503 * 270.88265 * 23 22 21 47 47 H 1.09000 * 113.61201 * 139.97411 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 1.8852 -2.2626 0.8397 6 7 2.8093 -2.7034 -0.2083 7 6 4.1394 -2.6596 0.0041 8 8 4.5749 -2.1676 1.0236 9 6 5.0858 -3.2218 -1.0252 10 6 6.5270 -3.0478 -0.5419 11 6 7.4877 -3.6181 -1.5872 12 6 8.9289 -3.4434 -1.1043 13 6 9.8753 -4.0057 -2.1336 14 1 9.4875 -4.4442 -3.0412 15 6 11.2361 -3.9614 -1.9161 16 7 11.7083 -3.4279 -0.8106 17 14 12.4091 -4.6577 -3.1922 18 1 12.2274 -3.9362 -4.4774 19 1 13.8079 -4.4883 -2.7234 20 1 12.1244 -6.1016 -3.3905 21 6 1.9152 -3.1452 2.0987 22 6 0.8265 -4.0018 1.4249 23 6 0.4400 -2.7440 0.6292 24 1 -0.3633 0.3541 0.9647 25 1 -0.3633 0.6584 -0.7890 26 1 -0.3633 -1.0125 -0.1757 27 1 3.0828 1.3432 -0.0709 28 1 1.5898 1.9162 -0.8526 29 1 1.7043 1.8724 0.9232 30 1 1.4190 -0.5302 2.0323 31 1 3.0409 -0.5036 1.2996 32 1 2.4636 -3.0307 -1.0534 33 1 4.8771 -4.2818 -1.1700 34 1 4.9521 -2.6930 -1.9688 35 1 6.7360 -1.9879 -0.3968 36 1 6.6602 -3.5769 0.4016 37 1 7.2788 -4.6779 -1.7328 38 1 7.3543 -3.0885 -2.5306 39 1 9.1376 -2.3835 -0.9589 40 1 9.0627 -3.9728 -0.1608 41 1 12.6656 -3.3963 -0.6577 42 1 2.8597 -3.6702 2.2414 43 1 1.5736 -2.6339 2.9986 44 1 0.0500 -4.3400 2.1111 45 1 1.2245 -4.8054 0.8052 46 1 -0.3041 -2.1232 1.1281 47 1 0.1944 -2.9453 -0.4136 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588760297.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:48 Heat of formation + Delta-G solvation = -28.895350 kcal Electronic energy + Delta-G solvation = -22576.412284 eV Core-core repulsion = 19373.325172 eV Total energy + Delta-G solvation = -3203.087112 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.77278 -38.43817 -36.67398 -34.80143 -33.16836 -32.50410 -29.76911 -28.62267 -28.14402 -25.84746 -25.60341 -23.99587 -22.52574 -21.43372 -20.27595 -19.88006 -19.21450 -16.83585 -16.37998 -16.10429 -15.99069 -15.45690 -15.21232 -14.98228 -14.78246 -14.41453 -13.81735 -13.73495 -13.16434 -12.92057 -12.62238 -12.53938 -12.45304 -12.24598 -12.14176 -11.78321 -11.64162 -11.56206 -11.48099 -11.14958 -10.92378 -10.69065 -10.52728 -10.49179 -10.45529 -10.34686 -9.57241 -9.55381 -9.15082 -9.01147 -8.93754 -8.50346 -8.26793 -5.91773 -3.94182 2.86668 3.17701 3.37718 3.41879 3.44317 3.65577 4.22565 4.38624 4.51845 4.58597 4.61975 4.90489 4.97161 5.07893 5.15883 5.18253 5.32435 5.35640 5.39076 5.43129 5.44496 5.45867 5.47981 5.56971 5.62628 5.70178 5.73659 5.84724 5.90034 5.96281 6.03229 6.21515 6.38170 6.56866 6.63778 6.77798 6.86603 6.90887 7.08861 7.25703 7.62301 7.77946 7.94897 8.10127 8.43377 8.52031 9.13474 9.69188 11.19585 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.028348 B = 0.002749 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.494957 B =10182.922570 C =10611.057617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 N -0.539 5.539 3 C 0.025 3.975 4 C 0.051 3.949 5 C 0.166 3.834 6 N -0.706 5.706 7 C 0.517 3.483 8 O -0.535 6.535 9 C -0.139 4.139 10 C -0.101 4.101 11 C -0.110 4.110 12 C 0.020 3.980 13 C -0.520 4.520 14 H 0.054 0.946 15 C 0.055 3.945 16 N -0.896 5.896 17 Si 0.891 3.109 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.277 1.277 21 C -0.140 4.140 22 C -0.142 4.142 23 C -0.138 4.138 24 H 0.022 0.978 25 H 0.063 0.937 26 H 0.081 0.919 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.022 0.978 30 H 0.042 0.958 31 H 0.092 0.908 32 H 0.400 0.600 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.046 0.954 38 H 0.046 0.954 39 H 0.015 0.985 40 H 0.015 0.985 41 H 0.260 0.740 42 H 0.077 0.923 43 H 0.085 0.915 44 H 0.068 0.932 45 H 0.081 0.919 46 H 0.093 0.907 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.941 3.852 2.694 28.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 N -0.263 5.263 3 C -0.123 4.123 4 C -0.078 4.078 5 C 0.079 3.921 6 N -0.359 5.359 7 C 0.305 3.695 8 O -0.411 6.411 9 C -0.179 4.179 10 C -0.139 4.139 11 C -0.148 4.148 12 C -0.017 4.017 13 C -0.559 4.559 14 H 0.072 0.928 15 C -0.146 4.146 16 N -0.535 5.535 17 Si 0.719 3.281 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.179 4.179 22 C -0.179 4.179 23 C -0.175 4.175 24 H 0.041 0.959 25 H 0.082 0.918 26 H 0.099 0.901 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.041 0.959 30 H 0.060 0.940 31 H 0.110 0.890 32 H 0.234 0.766 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.070 0.930 42 H 0.096 0.904 43 H 0.104 0.896 44 H 0.087 0.913 45 H 0.100 0.900 46 H 0.112 0.888 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -27.283 4.022 3.098 27.751 hybrid contribution 0.247 -0.032 -0.362 0.440 sum -27.036 3.990 2.736 27.465 Atomic orbital electron populations 1.22812 0.87980 1.03186 0.99954 1.61859 1.07385 1.13641 1.43387 1.22400 1.01144 0.88688 1.00084 1.22475 1.01930 0.92721 0.90643 1.21090 0.89540 0.92277 0.89227 1.45598 1.05462 1.66997 1.17795 1.20987 0.82208 0.78144 0.88164 1.90668 1.77150 1.44322 1.29008 1.21783 0.96079 1.01984 0.98020 1.21421 0.90683 1.02105 0.99722 1.21649 0.97306 0.98998 0.96852 1.19088 0.89040 0.97117 0.96416 1.21263 0.91279 1.38731 1.04606 0.92817 1.25039 0.98470 0.95566 0.95482 1.69962 1.13198 1.45175 1.25199 0.86675 0.79990 0.79559 0.81856 1.20291 1.21335 1.20293 1.23283 1.00017 0.97882 0.96734 1.22931 0.98730 0.96805 0.99462 1.23354 0.95609 0.97463 1.01117 0.95925 0.91842 0.90051 0.91169 0.91507 0.95912 0.94018 0.88958 0.76550 0.89364 0.89286 0.91905 0.91919 0.93550 0.93525 0.96629 0.96641 0.93010 0.90439 0.89605 0.91322 0.90013 0.88838 0.90661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 8.70 60.06 0.52 0.59 16 2 N -0.54 -5.25 4.94 -251.26 -1.24 -6.49 16 3 C 0.03 0.23 9.49 60.06 0.57 0.80 16 4 C 0.05 0.55 4.63 -3.82 -0.02 0.53 16 5 C 0.17 1.62 0.72 -131.00 -0.09 1.52 16 6 N -0.71 -7.41 5.15 -46.85 -0.24 -7.65 16 7 C 0.52 7.24 7.30 -10.99 -0.08 7.16 16 8 O -0.54 -9.49 13.87 5.55 0.08 -9.41 16 9 C -0.14 -1.90 5.70 -27.88 -0.16 -2.06 16 10 C -0.10 -1.85 4.50 -26.73 -0.12 -1.98 16 11 C -0.11 -2.33 5.15 -26.74 -0.14 -2.46 16 12 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 13 C -0.52 -15.22 9.11 -34.44 -0.31 -15.53 16 14 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.90 -27.85 13.29 55.43 0.74 -27.11 16 17 Si 0.89 22.14 29.54 -169.99 -5.02 17.11 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 C -0.14 -1.38 7.03 -25.77 -0.18 -1.56 16 22 C -0.14 -1.06 8.00 -25.78 -0.21 -1.27 16 23 C -0.14 -0.96 5.09 -25.92 -0.13 -1.09 16 24 H 0.02 0.16 7.95 -51.93 -0.41 -0.25 16 25 H 0.06 0.43 8.02 -51.93 -0.42 0.01 16 26 H 0.08 0.52 4.52 -51.93 -0.23 0.29 16 27 H 0.07 0.74 8.06 -51.93 -0.42 0.32 16 28 H 0.07 0.54 8.06 -51.92 -0.42 0.12 16 29 H 0.02 0.20 8.14 -51.93 -0.42 -0.23 16 30 H 0.04 0.41 7.68 -51.93 -0.40 0.01 16 31 H 0.09 1.28 6.28 -51.93 -0.33 0.95 16 32 H 0.40 3.28 8.66 -40.82 -0.35 2.92 16 33 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 36 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 37 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 41 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 42 H 0.08 0.95 7.52 -51.93 -0.39 0.56 16 43 H 0.09 0.77 7.99 -51.93 -0.41 0.35 16 44 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.09 0.57 6.53 -51.93 -0.34 0.23 16 47 H 0.07 0.47 7.87 -51.93 -0.41 0.06 16 LS Contribution 368.63 15.07 5.56 5.56 Total: -1.00 -33.32 368.63 -9.44 -42.76 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -8.72 Total: -1.38 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: -0.59 Total: -13.38 kcal Atomic # 7 Polarization: -40.51 SS G_CDS: -0.74 Total: -41.25 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.08 Total: -9.41 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.32 -9.44 -42.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588760297.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.862 kcal (2) G-P(sol) polarization free energy of solvation -33.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds