Wall clock time and date at job start Tue Mar 31 2020 05:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46839 * 2 1 4 4 C 1.53001 * 109.46839 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.46839 * 180.02562 * 4 3 2 6 6 H 1.08999 * 109.47341 * 55.00215 * 5 4 3 7 7 C 1.52999 * 109.47141 * 295.00321 * 5 4 3 8 8 C 1.53000 * 109.47297 * 175.00309 * 5 4 3 9 9 H 1.08999 * 109.47002 * 59.99698 * 8 5 4 10 10 C 1.53006 * 109.46782 * 299.99994 * 8 5 4 11 11 N 1.46898 * 109.47472 * 180.02562 * 8 5 4 12 12 C 1.46899 * 110.99793 * 205.00163 * 11 8 5 13 13 C 1.53040 * 109.45233 * 84.96724 * 12 11 8 14 14 C 1.53191 * 109.31462 * 181.37888 * 13 12 11 15 15 N 1.46929 * 108.77251 * 305.36323 * 14 13 12 16 16 C 1.36943 * 120.62913 * 233.58698 * 15 14 13 17 17 H 1.08000 * 119.99404 * 27.69419 * 16 15 14 18 18 C 1.38804 * 119.99837 * 207.69755 * 16 15 14 19 19 N 1.31618 * 120.00488 * 17.35070 * 18 16 15 20 20 Si 1.86806 * 119.99788 * 197.35548 * 18 16 15 21 21 H 1.48500 * 109.46986 * 59.99796 * 20 18 16 22 22 H 1.48495 * 109.47095 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.46875 * 300.00013 * 20 18 16 24 24 C 1.46924 * 118.74006 * 53.60682 * 15 14 13 25 25 C 1.53048 * 109.45554 * 205.02697 * 12 11 8 26 26 H 1.08999 * 109.47388 * 59.99798 * 1 2 3 27 27 H 1.09007 * 109.46753 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47203 * 299.99696 * 1 2 3 29 29 H 1.09000 * 109.47203 * 240.00304 * 2 1 3 30 30 H 1.08999 * 109.47388 * 120.00202 * 2 1 3 31 31 H 1.09000 * 109.46975 * 60.00164 * 3 2 1 32 32 H 1.08999 * 109.47296 * 300.00258 * 3 2 1 33 33 H 1.08995 * 109.46986 * 60.00723 * 4 3 2 34 34 H 1.08999 * 109.47388 * 300.00202 * 4 3 2 35 35 H 1.08995 * 109.47392 * 60.00145 * 7 5 4 36 36 H 1.09003 * 109.47120 * 179.97438 * 7 5 4 37 37 H 1.09002 * 109.47026 * 299.99397 * 7 5 4 38 38 H 1.09003 * 109.47180 * 60.00281 * 10 8 5 39 39 H 1.08999 * 109.46670 * 179.97438 * 10 8 5 40 40 H 1.08989 * 109.47390 * 300.00135 * 10 8 5 41 41 H 1.00901 * 110.99709 * 328.95130 * 11 8 5 42 42 H 1.09003 * 109.46257 * 324.99296 * 12 11 8 43 43 H 1.09004 * 109.49060 * 301.32722 * 13 12 11 44 44 H 1.08994 * 109.49889 * 61.42325 * 13 12 11 45 45 H 1.08996 * 109.58661 * 185.57370 * 14 13 12 46 46 H 1.08999 * 109.58740 * 65.14438 * 14 13 12 47 47 H 0.97003 * 120.00197 * 179.97438 * 19 18 16 48 48 H 1.09004 * 109.58430 * 186.60482 * 24 15 14 49 49 H 1.08998 * 109.70564 * 66.25092 * 24 15 14 50 50 H 1.09005 * 109.49661 * 298.57693 * 25 12 11 51 51 H 1.08994 * 109.49914 * 58.64441 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0799 2.8851 0.0000 6 1 3.6457 3.4236 0.8423 7 6 3.6745 3.5699 -1.3067 8 6 5.6048 2.8870 0.1250 9 1 6.0390 2.3484 -0.7173 10 6 6.0101 2.2021 1.4318 11 7 6.0944 4.2720 0.1262 12 6 7.4846 4.3393 -0.3434 13 6 7.5035 4.4023 -1.8724 14 6 8.9553 4.4376 -2.3602 15 7 9.6483 5.5533 -1.7016 16 6 10.3129 6.4955 -2.4405 17 1 9.9961 6.7119 -3.4501 18 6 11.3936 7.1721 -1.8920 19 7 11.9954 6.6947 -0.8232 20 14 11.9939 8.7605 -2.6707 21 1 10.8985 9.7631 -2.6574 22 1 13.1523 9.2819 -1.9016 23 1 12.4084 8.4987 -4.0724 24 6 9.6152 5.6387 -0.2352 25 6 8.1560 5.5899 0.2287 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.6766 1.9563 0.8900 32 1 1.6766 1.9564 -0.8899 33 1 3.9329 0.9290 -0.8909 34 1 3.9337 0.9286 0.8891 35 1 2.5882 3.5687 -1.3958 36 1 4.0374 4.5978 -1.3061 37 1 4.1088 3.0315 -2.1491 38 1 5.6469 1.1744 1.4313 39 1 7.0965 2.2031 1.5206 40 1 5.5759 2.7405 2.2741 41 1 5.4965 4.8673 -0.4272 42 1 8.0240 3.4528 -0.0098 43 1 7.0045 3.5226 -2.2789 44 1 6.9857 5.3015 -2.2059 45 1 8.9744 4.5820 -3.4403 46 1 9.4491 3.4997 -2.1060 47 1 12.7509 7.1674 -0.4401 48 1 10.0698 6.5757 0.0866 49 1 10.1634 4.8002 0.1943 50 1 7.6320 6.4781 -0.1246 51 1 8.1209 5.5559 1.3176 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588954198.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:22 Heat of formation + Delta-G solvation = -16.968468 kcal Electronic energy + Delta-G solvation = -23289.437978 eV Core-core repulsion = 20222.701149 eV Total energy + Delta-G solvation = -3066.736829 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -38.96644 -37.29191 -35.41164 -33.52934 -31.77019 -30.29671 -29.75977 -28.99366 -27.88929 -24.66141 -24.60193 -22.66206 -22.00150 -21.36532 -20.79711 -19.80235 -19.02871 -16.79612 -15.90442 -15.60382 -15.22282 -14.69969 -14.26953 -14.05676 -13.91972 -13.50417 -13.45119 -13.32368 -13.06352 -12.87904 -12.74394 -12.45181 -12.35459 -12.00217 -11.69108 -11.59094 -11.42106 -11.37104 -11.23898 -11.04154 -10.96065 -10.69416 -10.66770 -10.64892 -10.49723 -10.29077 -10.15112 -10.11871 -9.90190 -9.64697 -9.37915 -8.43729 -7.95052 -6.62944 -5.74573 -3.16384 3.40807 3.46476 3.47948 4.29571 4.53141 4.64668 4.65410 4.74054 4.86667 4.98047 5.04981 5.23298 5.37471 5.42564 5.45692 5.47765 5.50761 5.52831 5.57569 5.59895 5.65194 5.73231 5.77864 5.82329 5.84454 5.87352 5.90326 5.97107 6.01960 6.05334 6.10639 6.17408 6.26979 6.29832 6.38370 6.43544 6.58237 6.68408 6.72953 6.77317 6.91580 6.99749 7.43250 7.50409 7.73057 7.79420 7.83766 8.49819 9.26017 9.89745 10.46718 11.33909 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.042960 B = 0.002884 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.612675 B = 9706.123690 C = 9957.691397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.120 4.120 4 C -0.115 4.115 5 C -0.092 4.092 6 H 0.076 0.924 7 C -0.153 4.153 8 C 0.087 3.913 9 H 0.041 0.959 10 C -0.140 4.140 11 N -0.686 5.686 12 C 0.096 3.904 13 C -0.158 4.158 14 C 0.150 3.850 15 N -0.592 5.592 16 C -0.252 4.252 17 H 0.064 0.936 18 C 0.001 3.999 19 N -0.903 5.903 20 Si 0.902 3.098 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.283 1.283 24 C 0.171 3.829 25 C -0.124 4.124 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.058 0.942 41 H 0.336 0.664 42 H 0.067 0.933 43 H 0.044 0.956 44 H 0.057 0.943 45 H 0.051 0.949 46 H 0.015 0.985 47 H 0.254 0.746 48 H 0.088 0.912 49 H 0.016 0.984 50 H 0.051 0.949 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.546 -11.195 2.783 22.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.158 4.158 4 C -0.153 4.153 5 C -0.111 4.111 6 H 0.094 0.906 7 C -0.210 4.210 8 C -0.022 4.022 9 H 0.059 0.941 10 C -0.198 4.198 11 N -0.318 5.318 12 C -0.013 4.013 13 C -0.199 4.199 14 C 0.022 3.978 15 N -0.315 5.315 16 C -0.382 4.382 17 H 0.081 0.919 18 C -0.197 4.197 19 N -0.547 5.547 20 Si 0.732 3.268 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.210 1.210 24 C 0.044 3.956 25 C -0.164 4.164 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.157 0.843 42 H 0.086 0.914 43 H 0.062 0.938 44 H 0.076 0.924 45 H 0.069 0.931 46 H 0.033 0.967 47 H 0.064 0.936 48 H 0.106 0.894 49 H 0.034 0.966 50 H 0.070 0.930 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.213 -11.129 3.536 22.483 hybrid contribution 0.270 0.646 -1.368 1.537 sum -18.944 -10.483 2.168 21.759 Atomic orbital electron populations 1.21781 0.96108 1.01403 1.01739 1.21545 0.95651 0.97236 1.01902 1.21670 0.95637 0.96419 1.02062 1.21698 0.95095 0.96333 1.02211 1.21295 0.95154 0.96189 0.98423 0.90608 1.21942 1.01241 1.00586 0.97265 1.21487 0.93274 0.90325 0.97163 0.94122 1.21854 1.01490 0.98956 0.97517 1.60839 1.03792 1.07789 1.59338 1.21535 0.87804 0.99346 0.92610 1.22680 1.00207 0.99905 0.97111 1.20809 0.89806 0.91043 0.96102 1.44065 1.60021 1.25576 1.01837 1.19133 1.07625 1.13121 0.98274 0.91876 1.25027 0.95870 1.00191 0.98620 1.70029 1.22106 1.38339 1.24258 0.86375 0.77900 0.83948 0.78582 1.21060 1.21639 1.20954 1.20798 0.90006 1.01618 0.83145 1.22166 0.99283 0.95996 0.98969 0.92839 0.92969 0.92822 0.92174 0.92150 0.92118 0.91891 0.92168 0.91467 0.92414 0.92445 0.92833 0.92857 0.92772 0.92314 0.84342 0.91445 0.93766 0.92421 0.93075 0.96720 0.93611 0.89423 0.96628 0.93005 0.92829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 37.16 0.37 -0.62 16 2 C -0.13 -0.90 5.93 -26.73 -0.16 -1.05 16 3 C -0.12 -0.93 4.97 -26.73 -0.13 -1.07 16 4 C -0.12 -1.01 4.47 -26.73 -0.12 -1.13 16 5 C -0.09 -0.93 2.11 -90.62 -0.19 -1.12 16 6 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 7 C -0.15 -1.50 8.71 37.16 0.32 -1.18 16 8 C 0.09 1.08 2.04 -67.71 -0.14 0.94 16 9 H 0.04 0.55 7.11 -51.93 -0.37 0.18 16 10 C -0.14 -1.68 9.05 37.16 0.34 -1.34 16 11 N -0.69 -9.97 6.05 -99.69 -0.60 -10.58 16 12 C 0.10 1.67 2.24 -67.67 -0.15 1.52 16 13 C -0.16 -2.81 5.31 -26.61 -0.14 -2.95 16 14 C 0.15 3.23 6.52 -3.71 -0.02 3.20 16 15 N -0.59 -15.17 3.00 -172.32 -0.52 -15.69 16 16 C -0.25 -7.05 9.58 -15.06 -0.14 -7.19 16 17 H 0.06 1.73 7.89 -52.49 -0.41 1.32 16 18 C 0.00 0.04 4.91 -17.43 -0.09 -0.05 16 19 N -0.90 -26.62 11.19 55.49 0.62 -25.99 16 20 Si 0.90 21.99 29.59 -169.99 -5.03 16.96 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 C 0.17 4.18 5.31 -3.71 -0.02 4.16 16 25 C -0.12 -2.49 5.69 -26.61 -0.15 -2.64 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.49 6.57 -51.93 -0.34 0.15 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.58 6.17 -51.93 -0.32 0.26 16 35 H 0.06 0.50 6.57 -51.93 -0.34 0.16 16 36 H 0.06 0.60 6.21 -51.93 -0.32 0.28 16 37 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.05 0.54 6.32 -51.93 -0.33 0.21 16 39 H 0.05 0.72 7.43 -51.93 -0.39 0.34 16 40 H 0.06 0.71 8.14 -51.94 -0.42 0.28 16 41 H 0.34 4.73 5.92 -39.29 -0.23 4.50 16 42 H 0.07 1.24 7.11 -51.93 -0.37 0.87 16 43 H 0.04 0.70 7.41 -51.93 -0.38 0.31 16 44 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 45 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 46 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 47 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 48 H 0.09 2.40 6.04 -51.93 -0.31 2.09 16 49 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 50 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 51 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 377.00 15.07 5.68 5.68 Total: -1.00 -28.74 377.00 -10.29 -39.03 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -10.01 Total: 1.10 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: -0.43 Total: -10.51 kcal Atomic # 7 Polarization: -51.76 SS G_CDS: -0.50 Total: -52.26 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.03 Total: 16.96 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -28.74 -10.29 -39.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588954198.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.057 kcal (2) G-P(sol) polarization free energy of solvation -28.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds