Wall clock time and date at job start Tue Mar 31 2020 05:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47381 * 2 1 4 4 C 1.53000 * 109.47381 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.46854 * 180.02562 * 4 3 2 6 6 H 1.09003 * 109.47148 * 304.99558 * 5 4 3 7 7 C 1.52999 * 109.47265 * 64.99928 * 5 4 3 8 8 C 1.53006 * 109.46713 * 184.99802 * 5 4 3 9 9 H 1.09006 * 109.46773 * 59.99756 * 8 5 4 10 10 C 1.53000 * 109.47218 * 300.00001 * 8 5 4 11 11 N 1.46892 * 109.47028 * 179.97438 * 8 5 4 12 12 C 1.46899 * 111.00539 * 270.79987 * 11 8 5 13 13 C 1.53042 * 109.45716 * 272.35678 * 12 11 8 14 14 C 1.53192 * 109.31201 * 178.59648 * 13 12 11 15 15 N 1.46930 * 108.76457 * 54.65453 * 14 13 12 16 16 C 1.36935 * 120.62966 * 126.36295 * 15 14 13 17 17 H 1.08005 * 119.99954 * 206.94818 * 16 15 14 18 18 C 1.38815 * 120.00310 * 26.94290 * 16 15 14 19 19 N 1.31623 * 119.99770 * 28.17451 * 18 16 15 20 20 Si 1.86801 * 120.00331 * 208.17646 * 18 16 15 21 21 H 1.48491 * 109.47146 * 94.90111 * 20 18 16 22 22 H 1.48501 * 109.47106 * 214.90303 * 20 18 16 23 23 H 1.48508 * 109.46890 * 334.90218 * 20 18 16 24 24 C 1.46923 * 118.74017 * 306.38428 * 15 14 13 25 25 C 1.53037 * 109.46311 * 152.30164 * 12 11 8 26 26 H 1.09002 * 109.47558 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46974 * 300.00241 * 1 2 3 28 28 H 1.08999 * 109.47168 * 60.00334 * 1 2 3 29 29 H 1.08993 * 109.47362 * 239.99642 * 2 1 3 30 30 H 1.09005 * 109.46851 * 119.99955 * 2 1 3 31 31 H 1.09003 * 109.47181 * 59.99399 * 3 2 1 32 32 H 1.08999 * 109.46697 * 299.99954 * 3 2 1 33 33 H 1.09005 * 109.46851 * 299.99955 * 4 3 2 34 34 H 1.08995 * 109.46881 * 59.99835 * 4 3 2 35 35 H 1.08997 * 109.46974 * 299.99492 * 7 5 4 36 36 H 1.08997 * 109.46886 * 60.00259 * 7 5 4 37 37 H 1.09002 * 109.46794 * 179.97438 * 7 5 4 38 38 H 1.09004 * 109.46865 * 180.56037 * 10 8 5 39 39 H 1.09000 * 109.46753 * 300.56117 * 10 8 5 40 40 H 1.08998 * 109.47129 * 60.55781 * 10 8 5 41 41 H 1.00906 * 110.99955 * 146.84414 * 11 8 5 42 42 H 1.09004 * 109.46158 * 32.32487 * 12 11 8 43 43 H 1.09001 * 109.50064 * 298.56111 * 13 12 11 44 44 H 1.09000 * 109.49738 * 58.66038 * 13 12 11 45 45 H 1.09001 * 109.60299 * 294.86781 * 14 13 12 46 46 H 1.08999 * 109.59166 * 174.43536 * 14 13 12 47 47 H 0.96996 * 119.99910 * 180.02562 * 19 18 16 48 48 H 1.08996 * 109.58795 * 293.82170 * 24 15 14 49 49 H 1.08996 * 109.70244 * 173.46234 * 24 15 14 50 50 H 1.08996 * 109.49714 * 301.33600 * 25 12 11 51 51 H 1.08997 * 109.50045 * 61.43437 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 6 4.0800 2.8850 0.0013 6 1 3.6457 3.4243 -0.8406 7 6 3.6746 3.5687 1.3086 8 6 5.6049 2.8868 -0.1237 9 1 5.8936 2.3997 -1.0552 10 6 6.2145 2.1298 1.0579 11 7 6.0945 4.2717 -0.1238 12 6 6.1400 4.8142 -1.4882 13 6 7.4878 4.4728 -2.1278 14 6 7.5181 5.0094 -3.5624 15 7 7.2093 6.4457 -3.5363 16 6 8.0507 7.3510 -4.1259 17 1 8.0886 8.3680 -3.7644 18 6 8.8550 6.9616 -5.1882 19 7 8.4701 5.9843 -5.9814 20 14 10.4837 7.8245 -5.4919 21 1 11.5779 7.0596 -4.8418 22 1 10.7363 7.9050 -6.9530 23 1 10.4316 9.1950 -4.9223 24 6 5.9809 6.8921 -2.8654 25 6 5.9676 6.3340 -1.4387 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6767 1.9562 -0.8900 33 1 3.9330 0.9287 0.8909 34 1 3.9337 0.9285 -0.8891 35 1 2.5883 3.5674 1.3977 36 1 4.1090 3.0294 2.1504 37 1 4.0384 4.5962 1.3092 38 1 7.3012 2.1397 0.9741 39 1 5.9175 2.6111 1.9898 40 1 5.8589 1.0995 1.0518 41 1 6.9979 4.3359 0.3212 42 1 5.3360 4.3765 -2.0800 43 1 8.2909 4.9310 -1.5507 44 1 7.6204 3.3910 -2.1415 45 1 6.7747 4.4867 -4.1642 46 1 8.5095 4.8565 -3.9889 47 1 9.0323 5.7120 -6.7234 48 1 5.1120 6.5229 -3.4102 49 1 5.9555 7.9812 -2.8319 50 1 5.0181 6.5771 -0.9618 51 1 6.7852 6.7745 -0.8681 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588954199.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:25 Heat of formation + Delta-G solvation = -17.744416 kcal Electronic energy + Delta-G solvation = -23421.381669 eV Core-core repulsion = 20354.611193 eV Total energy + Delta-G solvation = -3066.770476 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -38.90990 -37.27213 -35.38519 -33.54473 -31.85570 -30.25521 -29.79924 -28.31454 -27.92425 -25.16134 -24.52473 -22.73923 -22.09512 -21.45515 -21.00938 -19.15295 -18.73218 -16.78818 -15.85271 -15.40352 -15.10637 -14.98229 -14.59274 -14.08243 -13.64824 -13.57800 -13.46174 -13.29460 -13.09589 -12.78025 -12.66837 -12.34269 -12.26422 -12.01510 -11.79176 -11.43421 -11.38924 -11.29113 -11.19673 -11.06198 -10.86534 -10.69768 -10.68237 -10.48808 -10.41605 -10.27837 -10.22061 -10.12890 -9.93452 -9.62003 -9.46465 -8.41039 -7.95508 -6.69888 -5.80775 -3.13858 3.39432 3.47850 3.49323 4.32336 4.53456 4.70085 4.75231 4.88650 4.95348 5.08598 5.22073 5.29898 5.31093 5.41961 5.44327 5.51746 5.54389 5.60070 5.62656 5.66211 5.70093 5.73438 5.84468 5.87765 5.92272 5.94395 5.98259 5.99004 6.13985 6.16802 6.17929 6.23158 6.28835 6.36665 6.49299 6.49973 6.57580 6.60532 6.66658 6.72306 6.87936 7.04885 7.27997 7.46545 7.52667 7.75761 7.85663 8.44129 9.20677 9.87617 10.45670 11.27637 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.026899 B = 0.003208 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.667042 B = 8726.950974 C = 8963.325808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.120 4.120 4 C -0.116 4.116 5 C -0.077 4.077 6 H 0.067 0.933 7 C -0.137 4.137 8 C 0.087 3.913 9 H 0.043 0.957 10 C -0.158 4.158 11 N -0.682 5.682 12 C 0.097 3.903 13 C -0.165 4.165 14 C 0.177 3.823 15 N -0.590 5.590 16 C -0.258 4.258 17 H 0.066 0.934 18 C 0.006 3.994 19 N -0.891 5.891 20 Si 0.890 3.110 21 H -0.288 1.288 22 H -0.293 1.293 23 H -0.278 1.278 24 C 0.145 3.855 25 C -0.116 4.116 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.043 0.957 36 H 0.047 0.953 37 H 0.068 0.932 38 H 0.050 0.950 39 H 0.064 0.936 40 H 0.059 0.941 41 H 0.336 0.664 42 H 0.066 0.934 43 H 0.056 0.944 44 H 0.043 0.957 45 H 0.017 0.983 46 H 0.073 0.927 47 H 0.253 0.747 48 H 0.015 0.985 49 H 0.054 0.946 50 H 0.054 0.946 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.707 -10.786 14.494 21.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.158 4.158 4 C -0.154 4.154 5 C -0.097 4.097 6 H 0.085 0.915 7 C -0.194 4.194 8 C -0.023 4.023 9 H 0.061 0.939 10 C -0.215 4.215 11 N -0.312 5.312 12 C -0.013 4.013 13 C -0.206 4.206 14 C 0.050 3.950 15 N -0.313 5.313 16 C -0.387 4.387 17 H 0.084 0.916 18 C -0.193 4.193 19 N -0.534 5.534 20 Si 0.720 3.280 21 H -0.215 1.215 22 H -0.219 1.219 23 H -0.203 1.203 24 C 0.018 3.982 25 C -0.155 4.155 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.155 0.845 42 H 0.085 0.915 43 H 0.075 0.925 44 H 0.061 0.939 45 H 0.035 0.965 46 H 0.092 0.908 47 H 0.063 0.937 48 H 0.033 0.967 49 H 0.072 0.928 50 H 0.073 0.927 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.259 -10.563 14.484 21.169 hybrid contribution 1.725 -0.197 -0.705 1.874 sum -9.534 -10.760 13.779 19.913 Atomic orbital electron populations 1.21781 0.96134 1.01331 1.01786 1.21544 0.95646 0.97333 1.01768 1.21661 0.95684 0.96273 1.02159 1.21706 0.95160 0.96902 1.01675 1.21080 0.94596 0.95003 0.98982 0.91472 1.21763 0.99561 1.01753 0.96332 1.21481 0.94736 0.88885 0.97183 0.93903 1.22092 1.00111 1.00215 0.99085 1.60709 1.32410 1.18620 1.19502 1.21516 0.96740 0.95757 0.87254 1.22817 0.97455 0.98712 1.01567 1.20584 1.00535 0.83796 0.90062 1.44082 1.21228 1.02577 1.63446 1.19141 1.15760 0.93811 1.10003 0.91639 1.24914 1.00677 0.98866 0.94890 1.70202 1.35657 1.32260 1.15262 0.86454 0.85250 0.79441 0.76873 1.21537 1.21931 1.20282 1.20922 0.89307 0.97433 0.90538 1.21963 1.00517 0.94189 0.98872 0.93033 0.92866 0.92750 0.92196 0.92299 0.91807 0.92122 0.92008 0.92376 0.93820 0.93406 0.91329 0.93121 0.91677 0.92156 0.84541 0.91537 0.92520 0.93861 0.96498 0.90832 0.93744 0.96721 0.92757 0.92716 0.92570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.91 37.16 0.37 -0.77 16 2 C -0.13 -1.02 5.93 -26.73 -0.16 -1.17 16 3 C -0.12 -1.09 4.97 -26.73 -0.13 -1.22 16 4 C -0.12 -1.13 4.18 -26.73 -0.11 -1.24 16 5 C -0.08 -0.88 2.34 -90.62 -0.21 -1.09 16 6 H 0.07 0.88 7.79 -51.93 -0.40 0.48 16 7 C -0.14 -1.47 8.44 37.16 0.31 -1.16 16 8 C 0.09 1.06 2.24 -67.71 -0.15 0.91 16 9 H 0.04 0.59 7.30 -51.93 -0.38 0.21 16 10 C -0.16 -1.61 8.44 37.16 0.31 -1.30 16 11 N -0.68 -9.44 5.32 -99.69 -0.53 -9.97 16 12 C 0.10 1.63 2.23 -67.67 -0.15 1.47 16 13 C -0.16 -3.12 5.31 -26.61 -0.14 -3.26 16 14 C 0.18 4.24 5.42 -3.71 -0.02 4.22 16 15 N -0.59 -14.98 2.99 -172.32 -0.52 -15.49 16 16 C -0.26 -7.20 9.50 -15.06 -0.14 -7.34 16 17 H 0.07 1.81 7.97 -52.48 -0.42 1.39 16 18 C 0.01 0.17 4.59 -17.43 -0.08 0.09 16 19 N -0.89 -26.30 11.90 55.49 0.66 -25.64 16 20 Si 0.89 21.85 29.64 -169.99 -5.04 16.81 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 C 0.14 3.11 6.51 -3.71 -0.02 3.08 16 25 C -0.12 -2.07 5.69 -26.61 -0.15 -2.22 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.57 6.56 -51.93 -0.34 0.23 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.56 6.72 -51.93 -0.35 0.22 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.04 0.43 6.56 -51.93 -0.34 0.09 16 36 H 0.05 0.48 6.42 -51.93 -0.33 0.14 16 37 H 0.07 0.84 7.60 -51.93 -0.39 0.45 16 38 H 0.05 0.52 8.12 -51.93 -0.42 0.10 16 39 H 0.06 0.65 6.40 -51.93 -0.33 0.32 16 40 H 0.06 0.56 6.57 -51.93 -0.34 0.22 16 41 H 0.34 4.58 7.99 -39.29 -0.31 4.27 16 42 H 0.07 1.19 7.43 -51.93 -0.39 0.80 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.04 0.76 7.69 -51.93 -0.40 0.36 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.07 1.97 6.34 -51.93 -0.33 1.64 16 47 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 48 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 49 H 0.05 1.15 7.94 -51.93 -0.41 0.74 16 50 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 51 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 378.29 15.07 5.70 5.70 Total: -1.00 -28.58 378.29 -10.31 -38.89 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -10.10 Total: 0.70 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: -0.48 Total: -11.00 kcal Atomic # 7 Polarization: -50.72 SS G_CDS: -0.39 Total: -51.11 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.04 Total: 16.81 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -28.58 -10.31 -38.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588954199.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.144 kcal (2) G-P(sol) polarization free energy of solvation -28.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds