Wall clock time and date at job start Tue Mar 31 2020 05:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46978 * 2 1 4 4 C 1.52994 * 109.47129 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47486 * 180.02562 * 4 3 2 6 6 H 1.08995 * 109.47010 * 54.99573 * 5 4 3 7 7 C 1.53001 * 109.47245 * 295.00218 * 5 4 3 8 8 C 1.52995 * 109.47319 * 175.00107 * 5 4 3 9 9 H 1.08998 * 109.47598 * 305.00014 * 8 5 4 10 10 C 1.53002 * 109.47199 * 65.00435 * 8 5 4 11 11 N 1.46901 * 109.47219 * 185.00215 * 8 5 4 12 12 C 1.46898 * 111.00337 * 153.68765 * 11 8 5 13 13 C 1.53047 * 109.44945 * 155.19715 * 12 11 8 14 14 C 1.53185 * 109.31213 * 181.37966 * 13 12 11 15 15 N 1.46928 * 108.77615 * 305.36681 * 14 13 12 16 16 C 1.36934 * 120.63065 * 233.58773 * 15 14 13 17 17 H 1.08005 * 120.00045 * 151.91978 * 16 15 14 18 18 C 1.38813 * 120.00144 * 331.91545 * 16 15 14 19 19 N 1.31622 * 120.00270 * 334.85487 * 18 16 15 20 20 Si 1.86800 * 120.00107 * 154.85017 * 18 16 15 21 21 H 1.48503 * 109.46903 * 85.00010 * 20 18 16 22 22 H 1.48500 * 109.47171 * 204.99598 * 20 18 16 23 23 H 1.48495 * 109.47275 * 325.00172 * 20 18 16 24 24 C 1.46925 * 118.73820 * 53.60869 * 15 14 13 25 25 C 1.53040 * 109.46123 * 275.26178 * 12 11 8 26 26 H 1.09001 * 109.47080 * 60.00136 * 1 2 3 27 27 H 1.09003 * 109.46802 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.46940 * 299.99746 * 1 2 3 29 29 H 1.09008 * 109.46822 * 240.00422 * 2 1 3 30 30 H 1.08993 * 109.47365 * 120.00436 * 2 1 3 31 31 H 1.08994 * 109.47078 * 60.00338 * 3 2 1 32 32 H 1.09001 * 109.47104 * 299.99849 * 3 2 1 33 33 H 1.09010 * 109.47278 * 60.00044 * 4 3 2 34 34 H 1.09000 * 109.47549 * 300.00540 * 4 3 2 35 35 H 1.09005 * 109.47261 * 299.99946 * 7 5 4 36 36 H 1.09008 * 109.47082 * 59.99562 * 7 5 4 37 37 H 1.08995 * 109.47490 * 179.97438 * 7 5 4 38 38 H 1.09001 * 109.46568 * 304.60804 * 10 8 5 39 39 H 1.08994 * 109.47090 * 64.61089 * 10 8 5 40 40 H 1.09003 * 109.47044 * 184.61610 * 10 8 5 41 41 H 1.00900 * 110.99971 * 29.72713 * 11 8 5 42 42 H 1.09001 * 109.45700 * 35.23718 * 12 11 8 43 43 H 1.08993 * 109.49638 * 301.33065 * 13 12 11 44 44 H 1.09000 * 109.49454 * 61.43219 * 13 12 11 45 45 H 1.09001 * 109.59105 * 185.57887 * 14 13 12 46 46 H 1.08998 * 109.70531 * 65.22267 * 14 13 12 47 47 H 0.96995 * 120.00523 * 179.97438 * 19 18 16 48 48 H 1.08997 * 109.58637 * 186.60252 * 24 15 14 49 49 H 1.08998 * 109.70530 * 66.24931 * 24 15 14 50 50 H 1.09005 * 109.49337 * 298.57979 * 25 12 11 51 51 H 1.08991 * 109.49695 * 58.66985 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6457 3.4235 0.8422 7 6 3.6747 3.5699 -1.3067 8 6 5.6048 2.8868 0.1250 9 1 5.8975 2.3220 1.0101 10 6 6.2193 2.2409 -1.1184 11 7 6.0846 4.2699 0.2461 12 6 7.3646 4.3222 0.9651 13 6 8.1257 5.5865 0.5595 14 6 9.4745 5.6204 1.2847 15 7 9.2380 5.4958 2.7295 16 6 9.7524 6.4166 3.6027 17 1 9.2513 6.6113 4.5394 18 6 10.9180 7.0998 3.2840 19 7 11.7852 6.5680 2.4488 20 14 11.2559 8.7740 4.0405 21 1 11.8922 8.5969 5.3705 22 1 12.1666 9.5428 3.1546 23 1 9.9776 9.5132 4.1978 24 6 8.4394 4.3640 3.2195 25 6 7.1021 4.3441 2.4726 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9330 0.9288 -0.8909 34 1 3.9337 0.9285 0.8890 35 1 4.1089 3.0314 -2.1491 36 1 2.5882 3.5686 -1.3959 37 1 4.0376 4.5976 -1.3061 38 1 5.8009 1.2435 -1.2541 39 1 5.9950 2.8511 -1.9932 40 1 7.2997 2.1677 -0.9936 41 1 5.3944 4.8542 0.6936 42 1 7.9589 3.4440 0.7127 43 1 8.2918 5.5813 -0.5177 44 1 7.5428 6.4657 0.8341 45 1 9.9775 6.5649 1.0770 46 1 10.0962 4.7927 0.9435 47 1 12.5995 7.0455 2.2258 48 1 8.2594 4.4795 4.2883 49 1 8.9734 3.4314 3.0376 50 1 6.5288 5.2351 2.7291 51 1 6.5397 3.4549 2.7569 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588954200.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:27 Heat of formation + Delta-G solvation = -18.123805 kcal Electronic energy + Delta-G solvation = -23237.228952 eV Core-core repulsion = 20170.442025 eV Total energy + Delta-G solvation = -3066.786928 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -38.95977 -37.35181 -35.42038 -33.61809 -31.75025 -30.22824 -29.72554 -28.34883 -28.08525 -25.31424 -24.57094 -22.79482 -22.01442 -21.36964 -20.86658 -19.47288 -18.78570 -16.77694 -15.94216 -15.42077 -15.27830 -14.89033 -14.59706 -14.04475 -13.67010 -13.62032 -13.47564 -13.39692 -12.94657 -12.90711 -12.52082 -12.43495 -12.37091 -12.01200 -11.81217 -11.50629 -11.45316 -11.35048 -11.22962 -11.11948 -10.83542 -10.71865 -10.66034 -10.60991 -10.51733 -10.33391 -10.18038 -10.14214 -9.92649 -9.66428 -9.37386 -8.41389 -7.96905 -6.65897 -5.78389 -3.14809 3.39632 3.47231 3.50814 4.28947 4.53796 4.62325 4.64897 4.77264 4.88220 4.98648 5.13210 5.22949 5.34011 5.42212 5.43357 5.49128 5.51069 5.56070 5.58158 5.59325 5.63904 5.73796 5.77354 5.82754 5.86727 5.88207 5.94016 5.97916 6.05776 6.09207 6.11644 6.18959 6.24291 6.32525 6.37261 6.48916 6.54972 6.66232 6.69669 6.75079 6.89151 6.98379 7.35390 7.46978 7.62777 7.76164 7.84999 8.46900 9.22983 9.88664 10.47033 11.30243 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.037022 B = 0.002893 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.117910 B = 9676.179338 C = 9885.111739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.120 4.120 4 C -0.114 4.114 5 C -0.092 4.092 6 H 0.065 0.935 7 C -0.142 4.142 8 C 0.087 3.913 9 H 0.041 0.959 10 C -0.141 4.141 11 N -0.682 5.682 12 C 0.097 3.903 13 C -0.123 4.123 14 C 0.172 3.828 15 N -0.590 5.590 16 C -0.258 4.258 17 H 0.063 0.937 18 C 0.006 3.994 19 N -0.893 5.893 20 Si 0.893 3.107 21 H -0.287 1.287 22 H -0.289 1.289 23 H -0.280 1.280 24 C 0.150 3.850 25 C -0.159 4.159 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.047 0.953 37 H 0.063 0.937 38 H 0.051 0.949 39 H 0.063 0.937 40 H 0.050 0.950 41 H 0.335 0.665 42 H 0.068 0.932 43 H 0.054 0.946 44 H 0.053 0.947 45 H 0.077 0.923 46 H 0.017 0.983 47 H 0.253 0.747 48 H 0.051 0.949 49 H 0.015 0.985 50 H 0.058 0.942 51 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.821 -10.898 -7.238 22.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.158 4.158 4 C -0.152 4.152 5 C -0.110 4.110 6 H 0.083 0.917 7 C -0.200 4.200 8 C -0.022 4.022 9 H 0.059 0.941 10 C -0.198 4.198 11 N -0.312 5.312 12 C -0.013 4.013 13 C -0.163 4.163 14 C 0.046 3.954 15 N -0.313 5.313 16 C -0.388 4.388 17 H 0.081 0.919 18 C -0.193 4.193 19 N -0.536 5.536 20 Si 0.723 3.277 21 H -0.213 1.213 22 H -0.215 1.215 23 H -0.206 1.206 24 C 0.023 3.977 25 C -0.200 4.200 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.082 0.918 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.069 0.931 41 H 0.153 0.847 42 H 0.086 0.914 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.095 0.905 46 H 0.035 0.965 47 H 0.063 0.937 48 H 0.069 0.931 49 H 0.032 0.968 50 H 0.077 0.923 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -18.354 -10.830 -7.925 22.737 hybrid contribution 0.004 0.658 1.356 1.507 sum -18.349 -10.171 -6.569 21.984 Atomic orbital electron populations 1.21780 0.96102 1.01406 1.01740 1.21545 0.95660 0.97231 1.01895 1.21666 0.95624 0.96425 1.02077 1.21674 0.95102 0.96380 1.02066 1.21310 0.94862 0.96078 0.98791 0.91677 1.21846 0.99963 1.01311 0.96838 1.21497 0.93023 0.90304 0.97414 0.94127 1.21882 1.00470 0.99232 0.98248 1.60794 1.05718 1.08536 1.56145 1.21531 0.89733 0.99255 0.90740 1.22128 0.98834 0.96067 0.99249 1.20708 0.91226 1.00933 0.82542 1.44065 1.59680 1.25600 1.01978 1.19076 1.03768 1.14203 1.01708 0.91920 1.24963 0.94697 0.99988 0.99672 1.70143 1.08765 1.36242 1.38499 0.86466 0.77678 0.85112 0.78484 1.21344 1.21538 1.20566 1.20798 0.89859 0.90808 0.96267 1.22685 1.00019 0.99947 0.97306 0.92837 0.92965 0.92822 0.92158 0.92175 0.92238 0.91757 0.91648 0.92233 0.92507 0.93447 0.91831 0.92989 0.91831 0.93052 0.84685 0.91422 0.92779 0.92863 0.90504 0.96457 0.93671 0.93052 0.96752 0.92345 0.93751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.91 37.16 0.37 -0.63 16 2 C -0.13 -0.91 5.93 -26.73 -0.16 -1.06 16 3 C -0.12 -0.94 4.97 -26.73 -0.13 -1.08 16 4 C -0.11 -1.00 4.32 -26.73 -0.12 -1.11 16 5 C -0.09 -0.91 2.07 -90.62 -0.19 -1.10 16 6 H 0.06 0.67 8.02 -51.93 -0.42 0.26 16 7 C -0.14 -1.37 8.35 37.16 0.31 -1.06 16 8 C 0.09 1.06 2.19 -67.71 -0.15 0.91 16 9 H 0.04 0.54 7.09 -51.93 -0.37 0.17 16 10 C -0.14 -1.65 8.60 37.16 0.32 -1.33 16 11 N -0.68 -9.60 5.51 -99.69 -0.55 -10.15 16 12 C 0.10 1.65 2.24 -67.67 -0.15 1.50 16 13 C -0.12 -2.41 5.69 -26.61 -0.15 -2.56 16 14 C 0.17 4.17 5.37 -3.71 -0.02 4.15 16 15 N -0.59 -15.06 2.98 -172.33 -0.51 -15.58 16 16 C -0.26 -7.23 9.52 -15.06 -0.14 -7.37 16 17 H 0.06 1.73 7.95 -52.48 -0.42 1.32 16 18 C 0.01 0.18 4.68 -17.43 -0.08 0.10 16 19 N -0.89 -26.41 11.76 55.49 0.65 -25.75 16 20 Si 0.89 21.89 29.62 -169.99 -5.04 16.85 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 C 0.15 3.22 6.52 -3.71 -0.02 3.20 16 25 C -0.16 -2.80 5.31 -26.61 -0.14 -2.94 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.43 8.14 -51.92 -0.42 0.00 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.50 6.57 -51.93 -0.34 0.16 16 33 H 0.06 0.57 6.71 -51.92 -0.35 0.22 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.55 6.45 -51.93 -0.33 0.21 16 36 H 0.05 0.41 6.57 -51.92 -0.34 0.07 16 37 H 0.06 0.68 7.75 -51.93 -0.40 0.28 16 38 H 0.05 0.52 6.47 -51.93 -0.34 0.19 16 39 H 0.06 0.75 6.63 -51.93 -0.34 0.41 16 40 H 0.05 0.67 7.58 -51.93 -0.39 0.28 16 41 H 0.34 4.58 8.01 -39.29 -0.31 4.27 16 42 H 0.07 1.22 7.25 -51.93 -0.38 0.85 16 43 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 44 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 45 H 0.08 2.07 6.33 -51.93 -0.33 1.74 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.25 7.21 8.31 -40.82 -0.34 6.88 16 48 H 0.05 1.09 7.93 -51.93 -0.41 0.68 16 49 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 50 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 51 H 0.04 0.70 7.41 -51.93 -0.38 0.31 16 LS Contribution 377.60 15.07 5.69 5.69 Total: -1.00 -28.72 377.60 -10.28 -39.00 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -10.07 Total: 0.33 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: -0.46 Total: -10.40 kcal Atomic # 7 Polarization: -51.07 SS G_CDS: -0.41 Total: -51.48 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.04 Total: 16.85 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -28.72 -10.28 -39.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588954200.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.880 kcal (2) G-P(sol) polarization free energy of solvation -28.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds