Wall clock time and date at job start Tue Mar 31 2020 05:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47205 * 2 1 4 4 C 1.53008 * 109.46894 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.46894 * 179.97438 * 4 3 2 6 6 H 1.08999 * 109.47235 * 305.00146 * 5 4 3 7 7 C 1.53001 * 109.47177 * 64.99746 * 5 4 3 8 8 C 1.52998 * 109.47042 * 185.00022 * 5 4 3 9 9 H 1.08994 * 109.46916 * 299.99460 * 8 5 4 10 10 C 1.53000 * 109.47313 * 60.00226 * 8 5 4 11 11 N 1.46908 * 109.47108 * 180.02562 * 8 5 4 12 12 C 1.46898 * 111.00159 * 154.99961 * 11 8 5 13 13 C 1.53043 * 109.45831 * 275.06746 * 12 11 8 14 14 C 1.53193 * 109.31100 * 178.61309 * 13 12 11 15 15 N 1.46926 * 108.77624 * 54.63476 * 14 13 12 16 16 C 1.36936 * 120.63097 * 126.36962 * 15 14 13 17 17 H 1.07998 * 119.99879 * 331.85197 * 16 15 14 18 18 C 1.38810 * 120.00109 * 151.86303 * 16 15 14 19 19 N 1.31624 * 119.99795 * 343.06785 * 18 16 15 20 20 Si 1.86802 * 120.00319 * 163.07254 * 18 16 15 21 21 H 1.48505 * 109.47041 * 59.99479 * 20 18 16 22 22 H 1.48500 * 109.47183 * 179.97438 * 20 18 16 23 23 H 1.48508 * 109.46858 * 299.99744 * 20 18 16 24 24 C 1.46924 * 118.73721 * 306.39281 * 15 14 13 25 25 C 1.53040 * 109.46175 * 154.99866 * 12 11 8 26 26 H 1.09002 * 109.47465 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47178 * 299.99881 * 1 2 3 28 28 H 1.09004 * 109.47188 * 60.00133 * 1 2 3 29 29 H 1.09002 * 109.47253 * 239.99578 * 2 1 3 30 30 H 1.09004 * 109.47188 * 119.99866 * 2 1 3 31 31 H 1.09001 * 109.47266 * 60.00425 * 3 2 1 32 32 H 1.09000 * 109.47354 * 299.99769 * 3 2 1 33 33 H 1.09000 * 109.47381 * 60.00186 * 4 3 2 34 34 H 1.08996 * 109.47334 * 299.99407 * 4 3 2 35 35 H 1.09003 * 109.47351 * 179.97438 * 7 5 4 36 36 H 1.09000 * 109.47164 * 299.99906 * 7 5 4 37 37 H 1.08999 * 109.46712 * 60.00079 * 7 5 4 38 38 H 1.09000 * 109.47117 * 180.02562 * 10 8 5 39 39 H 1.09002 * 109.46535 * 300.00003 * 10 8 5 40 40 H 1.08999 * 109.47054 * 59.99821 * 10 8 5 41 41 H 1.00901 * 110.99660 * 31.04273 * 11 8 5 42 42 H 1.09003 * 109.45971 * 35.02399 * 12 11 8 43 43 H 1.08996 * 109.49912 * 298.56319 * 13 12 11 44 44 H 1.09004 * 109.49649 * 58.66341 * 13 12 11 45 45 H 1.08999 * 109.58924 * 294.84550 * 14 13 12 46 46 H 1.09004 * 109.70513 * 174.49271 * 14 13 12 47 47 H 0.97001 * 119.99802 * 180.02562 * 19 18 16 48 48 H 1.08999 * 109.58846 * 293.81855 * 24 15 14 49 49 H 1.09000 * 109.70439 * 173.46437 * 24 15 14 50 50 H 1.08999 * 109.49466 * 301.33740 * 25 12 11 51 51 H 1.09003 * 109.49850 * 61.40032 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0800 2.8849 -0.0013 6 1 3.6451 3.4237 -0.8431 7 6 3.6758 3.5694 1.3060 8 6 5.6048 2.8866 -0.1277 9 1 6.0397 2.3479 0.7141 10 6 6.0090 2.2022 -1.4350 11 7 6.0946 4.2717 -0.1277 12 6 7.4853 4.3383 0.3408 13 6 7.5058 4.3986 1.8699 14 6 8.9581 4.4331 2.3561 15 7 9.6505 5.5499 1.6988 16 6 10.3152 6.4911 2.4386 17 1 9.9944 6.7114 3.4460 18 6 11.4012 7.1624 1.8937 19 7 12.0010 6.6844 0.8239 20 14 12.0114 8.7439 2.6784 21 1 12.4225 8.4745 4.0798 22 1 13.1742 9.2600 1.9124 23 1 10.9229 9.7541 2.6673 24 6 9.6157 5.6378 0.2326 25 6 8.1561 5.5899 -0.2299 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9330 0.9287 -0.8909 34 1 3.9337 0.9285 0.8891 35 1 4.0395 4.5969 1.3058 36 1 2.5895 3.5681 1.3960 37 1 4.1108 3.0305 2.1478 38 1 7.0953 2.2031 -1.5248 39 1 5.6456 1.1746 -1.4345 40 1 5.5741 2.7411 -2.2768 41 1 5.4972 4.8664 0.4269 42 1 8.0243 3.4523 0.0053 43 1 6.9884 5.2974 2.2055 44 1 7.0071 3.5183 2.2755 45 1 9.4516 3.4956 2.0999 46 1 8.9807 4.5744 3.4367 47 1 12.7601 7.1533 0.4433 48 1 10.1628 4.7986 -0.1969 49 1 10.0707 6.5742 -0.0903 50 1 8.1203 5.5574 -1.3188 51 1 7.6322 6.4774 0.1250 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588954201.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:30 Heat of formation + Delta-G solvation = -17.120559 kcal Electronic energy + Delta-G solvation = -23288.619001 eV Core-core repulsion = 20221.875577 eV Total energy + Delta-G solvation = -3066.743424 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 282.237 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -38.96616 -37.29114 -35.41071 -33.52810 -31.76866 -30.29540 -29.76063 -28.99410 -27.88875 -24.66121 -24.60167 -22.66189 -22.00115 -21.36490 -20.79695 -19.80194 -19.03032 -16.79539 -15.90456 -15.60318 -15.22244 -14.69997 -14.26973 -14.05688 -13.91948 -13.50263 -13.45097 -13.32302 -13.06307 -12.87738 -12.74381 -12.45125 -12.35527 -12.00327 -11.69071 -11.59130 -11.42148 -11.37096 -11.23861 -11.03896 -10.96001 -10.69590 -10.66803 -10.64922 -10.49720 -10.29098 -10.14925 -10.11884 -9.90163 -9.65048 -9.37841 -8.43816 -7.95069 -6.62159 -5.74544 -3.16894 3.40746 3.46370 3.47818 4.29525 4.53075 4.64629 4.65396 4.74065 4.86648 4.98071 5.04966 5.23273 5.37551 5.42559 5.45728 5.47806 5.50753 5.52824 5.57599 5.59880 5.65206 5.73276 5.77890 5.82373 5.84449 5.87326 5.90327 5.97153 6.01972 6.05318 6.10645 6.17382 6.26954 6.29835 6.38430 6.43524 6.58201 6.68543 6.72935 6.77352 6.91689 6.99899 7.43196 7.50395 7.73023 7.79459 7.83762 8.50092 9.26135 9.89664 10.46944 11.33959 Molecular weight = 282.24amu Principal moments of inertia in cm(-1) A = 0.043009 B = 0.002883 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.865147 B = 9709.813222 C = 9961.903546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.120 4.120 4 C -0.115 4.115 5 C -0.092 4.092 6 H 0.075 0.925 7 C -0.153 4.153 8 C 0.087 3.913 9 H 0.041 0.959 10 C -0.140 4.140 11 N -0.686 5.686 12 C 0.096 3.904 13 C -0.158 4.158 14 C 0.150 3.850 15 N -0.592 5.592 16 C -0.252 4.252 17 H 0.063 0.937 18 C 0.002 3.998 19 N -0.903 5.903 20 Si 0.902 3.098 21 H -0.283 1.283 22 H -0.291 1.291 23 H -0.284 1.284 24 C 0.171 3.829 25 C -0.124 4.124 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.052 0.948 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.058 0.942 41 H 0.336 0.664 42 H 0.067 0.933 43 H 0.057 0.943 44 H 0.044 0.956 45 H 0.015 0.985 46 H 0.051 0.949 47 H 0.254 0.746 48 H 0.016 0.984 49 H 0.087 0.913 50 H 0.053 0.947 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.554 -11.172 -2.787 22.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.158 4.158 4 C -0.153 4.153 5 C -0.111 4.111 6 H 0.094 0.906 7 C -0.210 4.210 8 C -0.022 4.022 9 H 0.059 0.941 10 C -0.198 4.198 11 N -0.318 5.318 12 C -0.013 4.013 13 C -0.199 4.199 14 C 0.022 3.978 15 N -0.315 5.315 16 C -0.382 4.382 17 H 0.081 0.919 18 C -0.197 4.197 19 N -0.547 5.547 20 Si 0.732 3.268 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.211 1.211 24 C 0.045 3.955 25 C -0.164 4.164 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.157 0.843 42 H 0.086 0.914 43 H 0.076 0.924 44 H 0.062 0.938 45 H 0.033 0.967 46 H 0.069 0.931 47 H 0.064 0.936 48 H 0.034 0.966 49 H 0.105 0.895 50 H 0.072 0.928 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -19.221 -11.105 -3.540 22.479 hybrid contribution 0.277 0.642 1.371 1.539 sum -18.944 -10.463 -2.169 21.750 Atomic orbital electron populations 1.21780 0.96109 1.01403 1.01738 1.21544 0.95650 0.97236 1.01902 1.21671 0.95636 0.96420 1.02060 1.21699 0.95093 0.96333 1.02211 1.21294 0.95159 0.96190 0.98418 0.90610 1.21944 1.01241 1.00589 0.97260 1.21486 0.93273 0.90322 0.97161 0.94126 1.21854 1.01493 0.98960 0.97509 1.60838 1.03791 1.07836 1.59307 1.21533 0.87794 0.99343 0.92613 1.22679 1.00199 0.99903 0.97115 1.20808 0.89799 0.91030 0.96117 1.44055 1.60050 1.25534 1.01855 1.19129 1.07298 1.13289 0.98457 0.91906 1.25045 0.95857 1.00187 0.98603 1.70029 1.21977 1.38486 1.24242 0.86374 0.77929 0.83864 0.78610 1.20946 1.21638 1.21055 1.20791 0.89987 1.01576 0.83169 1.22166 0.99290 0.95991 0.98977 0.92970 0.92847 0.92816 0.92151 0.92174 0.91887 0.92123 0.91465 0.92169 0.92445 0.92409 0.92840 0.92770 0.92849 0.92315 0.84338 0.91445 0.92426 0.93764 0.96740 0.93075 0.93614 0.96632 0.89462 0.92833 0.93003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 37.15 0.37 -0.62 16 2 C -0.13 -0.90 5.93 -26.74 -0.16 -1.05 16 3 C -0.12 -0.93 4.97 -26.73 -0.13 -1.07 16 4 C -0.12 -1.01 4.47 -26.73 -0.12 -1.13 16 5 C -0.09 -0.93 2.11 -90.62 -0.19 -1.12 16 6 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 7 C -0.15 -1.50 8.71 37.16 0.32 -1.18 16 8 C 0.09 1.08 2.04 -67.71 -0.14 0.94 16 9 H 0.04 0.55 7.10 -51.93 -0.37 0.18 16 10 C -0.14 -1.68 9.05 37.16 0.34 -1.34 16 11 N -0.69 -9.98 6.06 -99.69 -0.60 -10.58 16 12 C 0.10 1.68 2.24 -67.67 -0.15 1.53 16 13 C -0.16 -2.81 5.31 -26.61 -0.14 -2.95 16 14 C 0.15 3.23 6.52 -3.71 -0.02 3.21 16 15 N -0.59 -15.17 2.99 -172.32 -0.52 -15.69 16 16 C -0.25 -7.05 9.58 -15.06 -0.14 -7.20 16 17 H 0.06 1.73 7.88 -52.49 -0.41 1.31 16 18 C 0.00 0.04 4.92 -17.43 -0.09 -0.04 16 19 N -0.90 -26.62 11.19 55.49 0.62 -26.00 16 20 Si 0.90 22.00 29.59 -169.99 -5.03 16.97 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 24 C 0.17 4.19 5.30 -3.71 -0.02 4.17 16 25 C -0.12 -2.49 5.69 -26.61 -0.15 -2.64 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.49 6.57 -51.93 -0.34 0.15 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.58 6.17 -51.93 -0.32 0.26 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.60 6.21 -51.93 -0.32 0.28 16 36 H 0.06 0.50 6.57 -51.93 -0.34 0.16 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.05 0.72 7.43 -51.93 -0.39 0.34 16 39 H 0.05 0.54 6.32 -51.93 -0.33 0.21 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.34 4.73 5.91 -39.29 -0.23 4.50 16 42 H 0.07 1.24 7.11 -51.93 -0.37 0.87 16 43 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 44 H 0.04 0.70 7.41 -51.93 -0.38 0.31 16 45 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 47 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 48 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.09 2.39 6.06 -51.93 -0.31 2.07 16 50 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 51 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 377.03 15.07 5.68 5.68 Total: -1.00 -28.75 377.03 -10.29 -39.03 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -10.01 Total: 1.09 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: -0.43 Total: -10.50 kcal Atomic # 7 Polarization: -51.77 SS G_CDS: -0.50 Total: -52.27 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.03 Total: 16.97 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -28.75 -10.29 -39.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588954201.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.912 kcal (2) G-P(sol) polarization free energy of solvation -28.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds