Wall clock time and date at job start Tue Mar 31 2020 05:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 113.99842 * 2 1 4 4 C 1.53000 * 109.47249 * 180.02562 * 3 2 1 5 5 C 1.52994 * 112.85025 * 184.05878 * 4 3 2 6 6 N 1.46896 * 109.47296 * 304.81594 * 5 4 3 7 7 C 1.46957 * 111.00342 * 287.55686 * 6 5 4 8 8 C 1.53050 * 109.36995 * 176.80798 * 7 6 5 9 9 N 1.46961 * 109.36176 * 58.40265 * 8 7 6 10 10 C 1.46902 * 110.99907 * 176.81406 * 9 8 7 11 11 C 1.50693 * 109.46962 * 58.92265 * 10 9 8 12 12 H 1.07999 * 120.00701 * 4.93845 * 11 10 9 13 13 C 1.37884 * 119.99950 * 184.93092 * 11 10 9 14 14 N 1.31519 * 119.99697 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00199 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47096 * 0.02562 * 15 13 11 17 17 H 1.48498 * 109.46944 * 120.00365 * 15 13 11 18 18 H 1.48500 * 109.47247 * 240.00205 * 15 13 11 19 19 C 1.46955 * 110.88145 * 300.68156 * 9 8 7 20 20 C 1.46961 * 111.00124 * 163.75730 * 6 5 4 21 21 C 1.53780 * 113.61319 * 315.25028 * 4 3 2 22 22 C 1.53958 * 87.01783 * 89.23212 * 21 4 3 23 23 C 1.53773 * 87.11030 * 25.36145 * 22 21 4 24 24 H 1.09007 * 109.47272 * 299.99650 * 1 2 3 25 25 H 1.09000 * 109.47591 * 59.99631 * 1 2 3 26 26 H 1.09007 * 109.46761 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47265 * 60.00351 * 3 2 1 28 28 H 1.09008 * 109.47165 * 300.00289 * 3 2 1 29 29 H 1.09002 * 109.47404 * 64.81701 * 5 4 3 30 30 H 1.09000 * 109.47438 * 184.81669 * 5 4 3 31 31 H 1.09005 * 109.48716 * 296.78087 * 7 6 5 32 32 H 1.09011 * 109.48613 * 56.84122 * 7 6 5 33 33 H 1.08998 * 109.48680 * 298.43830 * 8 7 6 34 34 H 1.08993 * 109.49017 * 178.37028 * 8 7 6 35 35 H 1.08996 * 109.47066 * 178.92704 * 10 9 8 36 36 H 1.08999 * 109.46622 * 298.92052 * 10 9 8 37 37 H 0.96996 * 119.99680 * 179.97438 * 14 13 11 38 38 H 1.09008 * 109.48717 * 299.35623 * 19 9 8 39 39 H 1.09000 * 109.49283 * 179.29228 * 19 9 8 40 40 H 1.08993 * 109.49002 * 303.15615 * 20 6 5 41 41 H 1.08993 * 109.49173 * 63.20495 * 20 6 5 42 42 H 1.08995 * 113.61614 * 203.74736 * 21 4 3 43 43 H 1.09005 * 113.61668 * 334.65463 * 21 4 3 44 44 H 1.09006 * 113.53584 * 270.80978 * 22 21 4 45 45 H 1.09000 * 113.67052 * 139.93649 * 22 21 4 46 46 H 1.09003 * 113.61994 * 220.09078 * 23 22 21 47 47 H 1.08999 * 113.68989 * 89.20491 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.2387 2.5398 0.0991 6 7 3.7674 3.4167 -0.9810 7 6 4.3073 2.9899 -2.2795 8 6 3.7313 3.8774 -3.3853 9 7 4.0730 5.2803 -3.1117 10 6 3.6017 6.1573 -4.1918 11 6 2.1078 6.0203 -4.3343 12 1 1.5523 5.4109 -3.6368 13 6 1.4499 6.6731 -5.3552 14 7 2.1263 7.4149 -6.2048 15 14 -0.4021 6.5039 -5.5314 16 1 -0.9229 5.6210 -4.4570 17 1 -1.0342 7.8431 -5.4208 18 1 -0.7214 5.9137 -6.8561 19 6 3.5332 5.7073 -1.8133 20 6 4.1092 4.8196 -0.7074 21 6 4.0709 0.1384 0.9909 22 6 3.9379 -0.8902 -0.1469 23 6 4.0819 0.2882 -1.1242 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.6886 1.8464 0.8900 28 1 1.6885 1.8464 -0.8900 29 1 4.0126 2.9965 1.0627 30 1 5.3156 2.3979 0.0081 31 1 5.3935 3.0805 -2.2692 32 1 4.0304 1.9520 -2.4650 33 1 2.6474 3.7660 -3.4133 34 1 4.1526 3.5812 -4.3459 35 1 3.8508 7.1916 -3.9549 36 1 4.0836 5.8726 -5.1272 37 1 1.6635 7.8738 -6.9232 38 1 2.4469 5.6166 -1.8235 39 1 3.8100 6.7451 -1.6278 40 1 3.6879 5.1159 0.2532 41 1 5.1931 4.9310 -0.6790 42 1 5.1008 0.3166 1.3000 43 1 3.4022 -0.0495 1.8310 44 1 2.9612 -1.3727 -0.1855 45 1 4.7638 -1.6000 -0.1939 46 1 3.4222 0.2213 -1.9893 47 1 5.1144 0.5085 -1.3954 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589742345.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:27 Heat of formation + Delta-G solvation = -12.558897 kcal Electronic energy + Delta-G solvation = -23852.484673 eV Core-core repulsion = 20650.105964 eV Total energy + Delta-G solvation = -3202.378710 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.21432 -38.26566 -36.79256 -34.81977 -32.36643 -30.33491 -29.74100 -27.95189 -26.58358 -25.76075 -25.17711 -23.98982 -22.86801 -21.96755 -21.03603 -19.08778 -18.55455 -16.50565 -16.39262 -16.08574 -15.78497 -15.22430 -14.75502 -14.61879 -14.33339 -14.13407 -13.96290 -13.57830 -13.18926 -13.04926 -12.86941 -12.48336 -12.05221 -11.85363 -11.79331 -11.64642 -11.40660 -11.19056 -11.08169 -10.88915 -10.73827 -10.55013 -10.46858 -10.24512 -10.15052 -10.02550 -9.85471 -9.71682 -9.55150 -9.40423 -8.42069 -8.01604 -7.13503 -6.01135 -4.09847 3.26936 3.35143 3.39100 3.74335 4.10069 4.41936 4.59065 4.70162 4.83062 4.93529 5.11271 5.20742 5.29004 5.29436 5.37981 5.46827 5.50942 5.58478 5.63057 5.66131 5.68745 5.72287 5.81269 5.84471 5.90517 5.96175 5.99277 6.04155 6.05970 6.14445 6.22637 6.36109 6.39163 6.59314 6.66568 6.80372 6.91076 7.20895 7.25166 7.37702 7.45595 7.54631 7.92041 8.08682 8.32140 8.32491 9.01269 9.56899 11.03895 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018597 B = 0.004642 C = 0.004054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.278950 B = 6029.967915 C = 6905.947033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.389 6.389 3 C 0.094 3.906 4 C -0.071 4.071 5 C 0.073 3.927 6 N -0.535 5.535 7 C 0.051 3.949 8 C 0.066 3.934 9 N -0.544 5.544 10 C 0.186 3.814 11 C -0.545 4.545 12 H 0.059 0.941 13 C 0.064 3.936 14 N -0.892 5.892 15 Si 0.888 3.112 16 H -0.274 1.274 17 H -0.284 1.284 18 H -0.284 1.284 19 C 0.064 3.936 20 C 0.059 3.941 21 C -0.126 4.126 22 C -0.135 4.135 23 C -0.127 4.127 24 H 0.037 0.963 25 H 0.041 0.959 26 H 0.080 0.920 27 H 0.046 0.954 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.038 0.962 31 H 0.031 0.969 32 H 0.080 0.920 33 H 0.048 0.952 34 H 0.066 0.934 35 H 0.026 0.974 36 H 0.034 0.966 37 H 0.261 0.739 38 H 0.046 0.954 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.033 0.967 42 H 0.074 0.926 43 H 0.066 0.934 44 H 0.097 0.903 45 H 0.055 0.945 46 H 0.070 0.930 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.251 -13.921 14.054 19.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.308 6.308 3 C 0.017 3.983 4 C -0.072 4.072 5 C -0.056 4.056 6 N -0.259 5.259 7 C -0.077 4.077 8 C -0.063 4.063 9 N -0.268 5.268 10 C 0.061 3.939 11 C -0.585 4.585 12 H 0.077 0.923 13 C -0.138 4.138 14 N -0.531 5.531 15 Si 0.716 3.284 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.065 4.065 20 C -0.069 4.069 21 C -0.164 4.164 22 C -0.172 4.172 23 C -0.164 4.164 24 H 0.055 0.945 25 H 0.060 0.940 26 H 0.099 0.901 27 H 0.064 0.936 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.056 0.944 31 H 0.049 0.951 32 H 0.098 0.902 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.044 0.956 36 H 0.052 0.948 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.051 0.949 42 H 0.092 0.908 43 H 0.085 0.915 44 H 0.115 0.885 45 H 0.074 0.926 46 H 0.089 0.911 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.355 -13.946 13.886 19.821 hybrid contribution -1.316 0.396 -0.245 1.396 sum 1.039 -13.550 13.641 19.256 Atomic orbital electron populations 1.22691 0.81738 1.02147 1.00023 1.87854 1.18977 1.28507 1.95510 1.22066 0.91413 0.83651 1.01122 1.21772 0.93778 0.93610 0.98014 1.21985 0.96399 0.92112 0.95067 1.62110 1.59483 1.02283 1.02070 1.22496 0.96776 0.99450 0.89000 1.21913 0.99458 0.88981 0.95976 1.62685 1.58290 1.02613 1.03220 1.19734 0.93485 0.91776 0.88942 1.21799 0.93979 1.29763 1.12911 0.92301 1.24966 0.98130 0.95078 0.95648 1.69958 1.35555 1.31180 1.16402 0.86603 0.86002 0.77848 0.77961 1.19845 1.21002 1.20977 1.21917 0.98331 0.97000 0.89214 1.22221 0.98234 0.87842 0.98581 1.22890 1.00350 0.96196 0.96977 1.22915 1.02232 0.96098 0.96005 1.22980 1.00565 0.95935 0.96945 0.94467 0.94012 0.90113 0.93589 0.91419 0.91183 0.94351 0.95097 0.90189 0.93413 0.91573 0.95565 0.94835 0.92924 0.93590 0.91564 0.91500 0.94894 0.90782 0.91537 0.88506 0.92634 0.91139 0.90608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.42 16 2 O -0.39 -4.71 7.59 -35.23 -0.27 -4.98 16 3 C 0.09 1.17 5.20 37.16 0.19 1.36 16 4 C -0.07 -0.83 1.01 -153.70 -0.16 -0.98 16 5 C 0.07 0.89 4.51 -3.83 -0.02 0.88 16 6 N -0.53 -8.05 4.05 -234.46 -0.95 -9.00 16 7 C 0.05 0.81 5.10 -3.77 -0.02 0.79 16 8 C 0.07 1.31 5.24 -3.77 -0.02 1.29 16 9 N -0.54 -11.80 4.92 -235.91 -1.16 -12.96 16 10 C 0.19 4.83 5.14 -4.98 -0.03 4.81 16 11 C -0.55 -15.02 7.66 -34.44 -0.26 -15.28 16 12 H 0.06 1.63 5.82 -52.49 -0.31 1.33 16 13 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 14 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 15 Si 0.89 21.55 29.54 -169.99 -5.02 16.52 16 16 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 C 0.06 1.26 5.32 -3.76 -0.02 1.24 16 20 C 0.06 0.93 5.58 -3.76 -0.02 0.91 16 21 C -0.13 -1.30 7.01 -25.83 -0.18 -1.48 16 22 C -0.14 -1.44 7.54 -25.83 -0.19 -1.63 16 23 C -0.13 -1.47 4.75 -25.93 -0.12 -1.59 16 24 H 0.04 0.34 8.14 -51.92 -0.42 -0.09 16 25 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.98 7.85 -51.92 -0.41 0.58 16 29 H 0.07 0.81 7.91 -51.93 -0.41 0.40 16 30 H 0.04 0.47 7.99 -51.93 -0.41 0.05 16 31 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 1.18 4.66 -51.92 -0.24 0.93 16 33 H 0.05 1.06 6.61 -51.93 -0.34 0.71 16 34 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.03 0.72 8.11 -51.93 -0.42 0.30 16 36 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 38 H 0.05 1.00 6.78 -51.92 -0.35 0.64 16 39 H 0.07 1.28 8.12 -51.93 -0.42 0.86 16 40 H 0.07 0.93 8.02 -51.93 -0.42 0.51 16 41 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 43 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 44 H 0.10 1.12 6.17 -51.93 -0.32 0.80 16 45 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 46 H 0.07 0.90 7.43 -51.93 -0.39 0.51 16 47 H 0.08 0.86 7.79 -51.93 -0.40 0.45 16 LS Contribution 352.26 15.07 5.31 5.31 Total: -1.00 -28.93 352.26 -9.81 -38.74 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -8.63 Total: -1.46 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: 0.17 Total: -6.58 kcal Atomic # 7 Polarization: -46.19 SS G_CDS: -1.37 Total: -47.56 kcal Atomic # 8 Polarization: -4.71 SS G_CDS: -0.27 Total: -4.98 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -28.93 -9.81 -38.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589742345.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.184 kcal (2) G-P(sol) polarization free energy of solvation -28.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds